Wall clock time and date at job start Wed Apr 1 2020 04:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46982 * 2 1 4 4 O 1.42902 * 109.47231 * 119.99960 * 2 1 3 5 5 C 1.35677 * 116.99804 * 270.00111 * 4 2 1 6 6 C 1.38923 * 119.68074 * 179.72522 * 5 4 2 7 7 C 1.38374 * 119.10856 * 179.75416 * 6 5 4 8 8 C 1.38829 * 118.48696 * 0.51457 * 7 6 5 9 9 C 1.38051 * 119.28884 * 359.72479 * 8 7 6 10 10 N 1.31963 * 120.83234 * 0.02708 * 9 8 7 11 11 C 1.50700 * 109.47320 * 240.00024 * 2 1 3 12 12 O 1.21282 * 120.00168 * 255.80838 * 11 2 1 13 13 N 1.34779 * 119.99971 * 75.80451 * 11 2 1 14 14 C 1.47141 * 120.18334 * 354.57032 * 13 11 2 15 15 C 1.53617 * 107.51837 * 107.88031 * 14 13 11 16 16 C 1.53490 * 108.46535 * 69.77370 * 15 14 13 17 17 C 1.52466 * 109.15088 * 245.78517 * 16 15 14 18 18 C 1.53114 * 109.67221 * 43.92764 * 17 16 15 19 19 C 1.53437 * 109.34521 * 77.03768 * 18 17 16 20 20 H 1.08997 * 109.63615 * 47.55603 * 19 18 17 21 21 N 1.46501 * 109.63405 * 167.94863 * 19 18 17 22 22 C 1.36931 * 120.00447 * 204.60394 * 21 19 18 23 23 H 1.08004 * 119.99665 * 359.97438 * 22 21 19 24 24 C 1.38803 * 120.00301 * 179.72727 * 22 21 19 25 25 N 1.31618 * 119.99999 * 0.26694 * 24 22 21 26 26 Si 1.86800 * 120.00327 * 180.27682 * 24 22 21 27 27 H 1.48497 * 109.47541 * 89.99103 * 26 24 22 28 28 H 1.48497 * 109.47399 * 209.99776 * 26 24 22 29 29 H 1.48505 * 109.46784 * 329.99220 * 26 24 22 30 30 C 1.46520 * 120.16817 * 174.68223 * 13 11 2 31 31 H 1.08993 * 109.47058 * 306.46487 * 1 2 3 32 32 H 1.09004 * 109.47211 * 66.46837 * 1 2 3 33 33 H 1.09001 * 109.46696 * 186.46809 * 1 2 3 34 34 H 1.08000 * 120.44490 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.76160 * 180.24500 * 7 6 5 36 36 H 1.08005 * 120.35925 * 179.71215 * 8 7 6 37 37 H 1.07996 * 119.58013 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.84968 * 348.37495 * 14 13 11 39 39 H 1.09001 * 109.90237 * 227.41261 * 14 13 11 40 40 H 1.08997 * 109.63986 * 310.08164 * 15 14 13 41 41 H 1.08997 * 109.63812 * 189.46701 * 15 14 13 42 42 H 1.09003 * 109.52324 * 125.88402 * 16 15 14 43 43 H 1.08999 * 109.52510 * 5.68713 * 16 15 14 44 44 H 1.09003 * 109.43839 * 283.86177 * 17 16 15 45 45 H 1.09000 * 109.43794 * 163.99603 * 17 16 15 46 46 H 1.08991 * 109.49414 * 317.07238 * 18 17 16 47 47 H 1.09001 * 109.51074 * 197.00500 * 18 17 16 48 48 H 0.97004 * 119.99937 * 24.60339 * 21 19 18 49 49 H 0.97003 * 120.00583 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.37921 * 172.86050 * 30 13 11 51 51 H 1.09001 * 109.59551 * 53.11564 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 0.0830 2.2741 6 6 2.6688 -0.5158 3.4414 7 6 2.8791 0.2679 4.5623 8 6 2.6130 1.6279 4.4787 9 6 2.1556 2.1546 3.2874 10 7 1.9695 1.3824 2.2336 11 6 2.0324 -0.7104 -1.2304 12 8 2.4774 -1.8352 -1.1421 13 7 1.9872 -0.0958 -2.4291 14 6 1.3404 1.2191 -2.5623 15 6 2.4500 2.2614 -2.7683 16 6 3.0642 2.0493 -4.1589 17 6 4.5121 1.5981 -4.0026 18 6 4.6054 0.5364 -2.9033 19 6 4.1041 -0.8067 -3.4501 20 1 4.5633 -1.0020 -4.4192 21 7 4.4526 -1.8797 -2.5154 22 6 4.5795 -3.1663 -2.9664 23 1 4.4224 -3.3903 -4.0112 24 6 4.9152 -4.1819 -2.0818 25 7 5.1063 -3.9091 -0.8084 26 14 5.0960 -5.9359 -2.6984 27 1 6.5018 -6.1719 -3.1147 28 1 4.7358 -6.8822 -1.6121 29 1 4.1939 -6.1480 -3.8588 30 6 2.5798 -0.7347 -3.6070 31 1 -0.3633 0.6107 0.8264 32 1 -0.3634 0.4103 -0.9422 33 1 -0.3633 -1.0212 0.1158 34 1 2.8618 -1.5780 3.4722 35 1 3.2377 -0.1691 5.4824 36 1 2.7620 2.2669 5.3366 37 1 1.9468 3.2119 3.2173 38 1 0.7799 1.4494 -1.6563 39 1 0.6700 1.2175 -3.4217 40 1 3.2180 2.1345 -2.0054 41 1 2.0273 3.2640 -2.7036 42 1 3.0323 2.9846 -4.7177 43 1 2.5002 1.2850 -4.6935 44 1 5.1317 2.4538 -3.7340 45 1 4.8646 1.1774 -4.9443 46 1 3.9903 0.8361 -2.0550 47 1 5.6422 0.4344 -2.5828 48 1 4.5933 -1.6786 -1.5769 49 1 5.3413 -4.6187 -0.1902 50 1 2.3351 -0.1528 -4.4957 51 1 2.1797 -1.7428 -3.7162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088414269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:33 Heat of formation + Delta-G solvation = 20.221445 kcal Electronic energy + Delta-G solvation = -33185.165329 eV Core-core repulsion = 29087.195417 eV Total energy + Delta-G solvation = -4097.969912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.72998 -39.96025 -38.07591 -36.71109 -34.75418 -33.57593 -32.47670 -32.04060 -31.56288 -29.94575 -29.32933 -26.90294 -26.48498 -24.75277 -23.73378 -23.35866 -22.77907 -22.31911 -20.47240 -19.90309 -18.38871 -18.17771 -16.94879 -16.74207 -16.25141 -15.91251 -15.64042 -15.38886 -15.30794 -14.99193 -14.43021 -14.12304 -14.02729 -13.86665 -13.46456 -13.35535 -13.15355 -13.11496 -12.90257 -12.72991 -12.24029 -11.98229 -11.96183 -11.78617 -11.76500 -11.49824 -11.40788 -10.92361 -10.80230 -10.73986 -10.65007 -10.53730 -10.24210 -10.06287 -9.94536 -9.92774 -9.61930 -9.58898 -9.28821 -8.86984 -8.63627 -8.38473 -7.95895 -6.50565 -5.41187 -2.66877 1.18057 1.28189 2.85509 3.39350 3.59459 3.63933 3.66029 3.75222 3.81451 4.29197 4.73650 4.81381 4.83973 4.90803 4.97620 5.01881 5.09773 5.16026 5.18785 5.22555 5.32537 5.39158 5.47578 5.48806 5.61994 5.65439 5.75080 5.76067 5.81776 5.82712 5.90059 5.92715 5.97571 6.11168 6.15689 6.20005 6.24747 6.26686 6.35753 6.40648 6.44793 6.48016 6.72127 6.81278 6.93844 7.00757 7.27166 7.42088 7.86215 7.93305 8.02592 8.73620 9.02975 9.86540 10.48748 10.82194 11.80686 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004783 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.042136 B = 5852.838020 C = 8024.798498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.103 0.897 4 O -0.265 6.265 5 C 0.331 3.669 6 C -0.186 4.186 7 C -0.042 4.042 8 C -0.221 4.221 9 C 0.136 3.864 10 N -0.545 5.545 11 C 0.485 3.515 12 O -0.426 6.426 13 N -0.608 5.608 14 C 0.099 3.901 15 C -0.147 4.147 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.134 4.134 19 C 0.164 3.836 20 H 0.052 0.948 21 N -0.703 5.703 22 C -0.228 4.228 23 H 0.061 0.939 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.894 3.106 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.286 1.286 30 C 0.095 3.905 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.386 0.614 49 H 0.247 0.753 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 18.432 4.438 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 H 0.120 0.880 4 O -0.170 6.170 5 C 0.152 3.848 6 C -0.206 4.206 7 C -0.067 4.067 8 C -0.242 4.242 9 C -0.020 4.020 10 N -0.269 5.269 11 C 0.267 3.733 12 O -0.292 6.292 13 N -0.346 5.346 14 C -0.024 4.024 15 C -0.185 4.185 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.173 4.173 19 C 0.052 3.948 20 H 0.069 0.931 21 N -0.344 5.344 22 C -0.360 4.360 23 H 0.079 0.921 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.727 3.273 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.212 1.212 30 C -0.030 4.030 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.222 0.778 49 H 0.058 0.942 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.476 17.613 3.592 20.320 hybrid contribution 0.297 -1.002 0.691 1.253 sum -9.179 16.611 4.283 19.455 Atomic orbital electron populations 1.22251 0.93456 1.03638 1.03041 1.22169 0.95071 0.97712 0.83747 0.87969 1.86508 1.79176 1.33906 1.17439 1.19982 0.90340 0.87177 0.87335 1.21186 1.05463 1.02619 0.91381 1.21394 0.94196 0.93407 0.97702 1.21910 1.06175 0.96196 0.99912 1.22348 0.93135 0.98991 0.87499 1.67268 1.22302 1.04874 1.32477 1.20077 0.81587 0.87957 0.83644 1.91140 1.38444 1.15767 1.83847 1.47879 1.58963 1.19328 1.08478 1.22108 0.94721 0.83372 1.02234 1.22487 0.99101 0.98188 0.98772 1.21887 0.97059 1.00785 0.96677 1.21461 0.95913 0.98316 0.99474 1.22202 1.01287 0.95286 0.98481 1.20794 0.91195 0.88261 0.94508 0.93070 1.42365 1.82115 1.02602 1.07305 1.19028 1.39001 0.85001 0.92936 0.92070 1.24592 1.03183 0.97007 0.95421 1.69695 1.54217 1.30858 1.01715 0.86386 0.77269 0.86428 0.77221 1.22305 1.22170 1.21203 1.22770 0.97776 0.97279 0.85179 0.91392 0.90391 0.91178 0.83728 0.84338 0.84898 0.82708 0.90043 0.91096 0.90188 0.91794 0.92777 0.90834 0.92891 0.92150 0.91089 0.92451 0.77817 0.94248 0.91407 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.07 37.16 0.34 -1.86 16 2 C 0.07 1.21 2.05 -27.88 -0.06 1.15 16 3 H 0.10 1.56 6.25 -51.92 -0.32 1.23 16 4 O -0.27 -5.09 9.34 -38.13 -0.36 -5.45 16 5 C 0.33 5.38 7.45 -17.12 -0.13 5.25 16 6 C -0.19 -2.67 10.04 -39.28 -0.39 -3.07 16 7 C -0.04 -0.45 10.17 -39.31 -0.40 -0.85 16 8 C -0.22 -2.14 10.11 -39.43 -0.40 -2.54 16 9 C 0.14 1.47 11.18 -17.56 -0.20 1.27 16 10 N -0.54 -7.64 8.65 -13.33 -0.12 -7.76 16 11 C 0.48 9.53 6.06 -10.98 -0.07 9.47 16 12 O -0.43 -11.05 13.15 -13.84 -0.18 -11.23 16 13 N -0.61 -9.84 1.72 -172.52 -0.30 -10.14 16 14 C 0.10 1.14 5.17 -3.37 -0.02 1.12 16 15 C -0.15 -1.60 5.60 -26.16 -0.15 -1.75 16 16 C -0.13 -1.41 5.48 -26.75 -0.15 -1.55 16 17 C -0.11 -1.50 5.67 -26.95 -0.15 -1.65 16 18 C -0.13 -2.33 4.92 -26.45 -0.13 -2.46 16 19 C 0.16 3.35 2.67 -67.49 -0.18 3.17 16 20 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 21 N -0.70 -18.60 3.06 -53.00 -0.16 -18.77 16 22 C -0.23 -6.69 9.84 -15.07 -0.15 -6.84 16 23 H 0.06 1.75 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.92 -29.68 13.06 55.49 0.72 -28.95 16 26 Si 0.89 23.94 29.55 -169.99 -5.02 18.91 16 27 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 28 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 30 C 0.09 1.69 4.94 -3.82 -0.02 1.67 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.86 5.98 -51.93 -0.31 0.55 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.08 0.84 4.31 -51.93 -0.22 0.62 16 39 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 40 H 0.08 1.04 5.45 -51.93 -0.28 0.75 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.84 4.49 -51.93 -0.23 0.61 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 46 H 0.07 1.25 3.68 -51.93 -0.19 1.06 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.39 11.34 6.53 -40.82 -0.27 11.08 16 49 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 50 H 0.07 0.98 5.08 -51.92 -0.26 0.72 16 51 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -36.49 386.45 -9.44 -45.93 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.52 Total: 11.37 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.34 Total: 0.26 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.15 Total: -65.61 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.54 Total: -16.68 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.49 -9.44 -45.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.151 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds