Wall clock time and date at job start Wed Apr 1 2020 04:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46982 * 2 1 4 4 O 1.42902 * 109.47231 * 119.99960 * 2 1 3 5 5 C 1.35677 * 116.99804 * 270.00111 * 4 2 1 6 6 C 1.38923 * 119.68074 * 179.72522 * 5 4 2 7 7 C 1.38374 * 119.10856 * 179.75416 * 6 5 4 8 8 C 1.38829 * 118.48696 * 0.51457 * 7 6 5 9 9 C 1.38051 * 119.28884 * 359.72479 * 8 7 6 10 10 N 1.31963 * 120.83234 * 0.02708 * 9 8 7 11 11 C 1.50700 * 109.47320 * 240.00024 * 2 1 3 12 12 O 1.21282 * 120.00168 * 255.80838 * 11 2 1 13 13 N 1.34779 * 119.99971 * 75.80451 * 11 2 1 14 14 C 1.47141 * 120.18334 * 354.57032 * 13 11 2 15 15 C 1.53617 * 107.51837 * 107.88031 * 14 13 11 16 16 C 1.53490 * 108.46535 * 69.77370 * 15 14 13 17 17 C 1.52466 * 109.15088 * 245.78517 * 16 15 14 18 18 C 1.53114 * 109.67221 * 43.92764 * 17 16 15 19 19 C 1.53437 * 109.34521 * 77.03768 * 18 17 16 20 20 H 1.08997 * 109.63615 * 47.55603 * 19 18 17 21 21 N 1.46501 * 109.63405 * 167.94863 * 19 18 17 22 22 C 1.36931 * 120.00447 * 204.60394 * 21 19 18 23 23 H 1.08004 * 119.99665 * 359.97438 * 22 21 19 24 24 C 1.38803 * 120.00301 * 179.72727 * 22 21 19 25 25 N 1.31618 * 119.99999 * 0.26694 * 24 22 21 26 26 Si 1.86800 * 120.00327 * 180.27682 * 24 22 21 27 27 H 1.48497 * 109.47541 * 89.99103 * 26 24 22 28 28 H 1.48497 * 109.47399 * 209.99776 * 26 24 22 29 29 H 1.48505 * 109.46784 * 329.99220 * 26 24 22 30 30 C 1.46520 * 120.16817 * 174.68223 * 13 11 2 31 31 H 1.08993 * 109.47058 * 306.46487 * 1 2 3 32 32 H 1.09004 * 109.47211 * 66.46837 * 1 2 3 33 33 H 1.09001 * 109.46696 * 186.46809 * 1 2 3 34 34 H 1.08000 * 120.44490 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.76160 * 180.24500 * 7 6 5 36 36 H 1.08005 * 120.35925 * 179.71215 * 8 7 6 37 37 H 1.07996 * 119.58013 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.84968 * 348.37495 * 14 13 11 39 39 H 1.09001 * 109.90237 * 227.41261 * 14 13 11 40 40 H 1.08997 * 109.63986 * 310.08164 * 15 14 13 41 41 H 1.08997 * 109.63812 * 189.46701 * 15 14 13 42 42 H 1.09003 * 109.52324 * 125.88402 * 16 15 14 43 43 H 1.08999 * 109.52510 * 5.68713 * 16 15 14 44 44 H 1.09003 * 109.43839 * 283.86177 * 17 16 15 45 45 H 1.09000 * 109.43794 * 163.99603 * 17 16 15 46 46 H 1.08991 * 109.49414 * 317.07238 * 18 17 16 47 47 H 1.09001 * 109.51074 * 197.00500 * 18 17 16 48 48 H 0.97004 * 119.99937 * 24.60339 * 21 19 18 49 49 H 0.97003 * 120.00583 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.37921 * 172.86050 * 30 13 11 51 51 H 1.09001 * 109.59551 * 53.11564 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 0.0830 2.2741 6 6 2.6688 -0.5158 3.4414 7 6 2.8791 0.2679 4.5623 8 6 2.6130 1.6279 4.4787 9 6 2.1556 2.1546 3.2874 10 7 1.9695 1.3824 2.2336 11 6 2.0324 -0.7104 -1.2304 12 8 2.4774 -1.8352 -1.1421 13 7 1.9872 -0.0958 -2.4291 14 6 1.3404 1.2191 -2.5623 15 6 2.4500 2.2614 -2.7683 16 6 3.0642 2.0493 -4.1589 17 6 4.5121 1.5981 -4.0026 18 6 4.6054 0.5364 -2.9033 19 6 4.1041 -0.8067 -3.4501 20 1 4.5633 -1.0020 -4.4192 21 7 4.4526 -1.8797 -2.5154 22 6 4.5795 -3.1663 -2.9664 23 1 4.4224 -3.3903 -4.0112 24 6 4.9152 -4.1819 -2.0818 25 7 5.1063 -3.9091 -0.8084 26 14 5.0960 -5.9359 -2.6984 27 1 6.5018 -6.1719 -3.1147 28 1 4.7358 -6.8822 -1.6121 29 1 4.1939 -6.1480 -3.8588 30 6 2.5798 -0.7347 -3.6070 31 1 -0.3633 0.6107 0.8264 32 1 -0.3634 0.4103 -0.9422 33 1 -0.3633 -1.0212 0.1158 34 1 2.8618 -1.5780 3.4722 35 1 3.2377 -0.1691 5.4824 36 1 2.7620 2.2669 5.3366 37 1 1.9468 3.2119 3.2173 38 1 0.7799 1.4494 -1.6563 39 1 0.6700 1.2175 -3.4217 40 1 3.2180 2.1345 -2.0054 41 1 2.0273 3.2640 -2.7036 42 1 3.0323 2.9846 -4.7177 43 1 2.5002 1.2850 -4.6935 44 1 5.1317 2.4538 -3.7340 45 1 4.8646 1.1774 -4.9443 46 1 3.9903 0.8361 -2.0550 47 1 5.6422 0.4344 -2.5828 48 1 4.5933 -1.6786 -1.5769 49 1 5.3413 -4.6187 -0.1902 50 1 2.3351 -0.1528 -4.4957 51 1 2.1797 -1.7428 -3.7162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088414269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:31 Heat of formation + Delta-G solvation = -4.478309 kcal Electronic energy + Delta-G solvation = -33186.236391 eV Core-core repulsion = 29087.195417 eV Total energy + Delta-G solvation = -4099.040974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92270 -41.17254 -39.27248 -38.10585 -36.45575 -35.01219 -33.74662 -33.42580 -32.88839 -31.08873 -30.94345 -28.37351 -27.80922 -26.02078 -25.31435 -24.50719 -24.08641 -23.42341 -21.91421 -21.08970 -19.59956 -19.50395 -18.97481 -18.04398 -17.35599 -17.12186 -16.82365 -16.69602 -16.59887 -16.46912 -15.87893 -15.46222 -15.39709 -15.17064 -14.82336 -14.70186 -14.54293 -14.30743 -14.09428 -14.00365 -13.40938 -13.32581 -13.23671 -13.09618 -12.90532 -12.89256 -12.77821 -12.67543 -12.47414 -12.28797 -12.13175 -11.91552 -11.77394 -11.66237 -11.43303 -11.14700 -10.94263 -10.89006 -10.79817 -10.57630 -10.26627 -9.50284 -9.43518 -8.61337 -7.74266 -4.97898 0.23278 0.34420 1.41048 1.45061 1.51849 1.62780 1.94729 2.53162 2.63395 2.85537 3.32627 3.53738 3.56201 3.83863 3.91714 3.99480 4.02429 4.08026 4.08572 4.14593 4.24950 4.25507 4.27138 4.31870 4.36988 4.48688 4.59434 4.61118 4.65949 4.68954 4.77041 4.82933 4.87952 4.93528 5.01560 5.06325 5.09525 5.14940 5.18791 5.26791 5.30668 5.44597 5.47985 5.54621 5.57893 5.59376 5.66842 5.89692 6.29153 6.41966 6.65866 6.88764 7.48945 7.59040 8.34846 8.54463 9.48972 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004783 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.042136 B = 5852.838020 C = 8024.798498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.081 3.919 3 H 0.115 0.885 4 O -0.310 6.310 5 C 0.296 3.704 6 C -0.218 4.218 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.130 3.870 10 N -0.553 5.553 11 C 0.478 3.522 12 O -0.504 6.504 13 N -0.599 5.599 14 C 0.092 3.908 15 C -0.143 4.143 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.124 4.124 19 C 0.154 3.846 20 H 0.048 0.952 21 N -0.714 5.714 22 C -0.220 4.220 23 H 0.066 0.934 24 C -0.075 4.075 25 N -0.957 5.957 26 Si 0.960 3.040 27 H -0.287 1.287 28 H -0.305 1.305 29 H -0.274 1.274 30 C 0.106 3.894 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.196 0.804 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.027 0.973 48 H 0.368 0.632 49 H 0.238 0.762 50 H 0.115 0.885 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 22.802 3.834 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.133 0.867 4 O -0.217 6.217 5 C 0.119 3.881 6 C -0.239 4.239 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.026 4.026 10 N -0.278 5.278 11 C 0.263 3.737 12 O -0.376 6.376 13 N -0.335 5.335 14 C -0.030 4.030 15 C -0.181 4.181 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.162 4.162 19 C 0.044 3.956 20 H 0.066 0.934 21 N -0.353 5.353 22 C -0.353 4.353 23 H 0.084 0.916 24 C -0.268 4.268 25 N -0.608 5.608 26 Si 0.791 3.209 27 H -0.215 1.215 28 H -0.232 1.232 29 H -0.199 1.199 30 C -0.019 4.019 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.186 0.814 36 H 0.194 0.806 37 H 0.213 0.787 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.200 0.800 49 H 0.047 0.953 50 H 0.132 0.868 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.076 22.077 2.911 24.871 hybrid contribution 0.777 -2.150 0.922 2.465 sum -10.299 19.927 3.834 22.756 Atomic orbital electron populations 1.22207 0.91031 1.02877 1.05107 1.22171 0.96703 0.97114 0.81864 0.86707 1.86448 1.80309 1.36080 1.18871 1.20172 0.92692 0.88278 0.86955 1.21316 1.07439 1.02390 0.92718 1.21803 0.92974 0.94044 0.97361 1.22409 1.03430 0.95770 1.00812 1.23157 0.91945 1.00410 0.87040 1.67251 1.22634 1.03845 1.34027 1.20835 0.80222 0.87301 0.85374 1.91105 1.42117 1.19187 1.85209 1.47939 1.57963 1.20735 1.06884 1.22535 0.95386 0.80606 1.04428 1.22435 0.98137 0.99631 0.97847 1.21872 0.94836 1.02105 0.97076 1.21419 0.98372 0.97135 0.97541 1.22105 0.99129 0.94969 1.00031 1.21124 0.93068 0.88207 0.93160 0.93395 1.42513 1.82431 1.03121 1.07231 1.19422 1.36399 0.86513 0.92943 0.91612 1.25370 1.04661 1.01038 0.95693 1.69911 1.56653 1.31315 1.02967 0.85328 0.77537 0.81519 0.76537 1.21476 1.23195 1.19918 1.22435 0.95399 0.96409 0.87617 0.89837 0.87647 0.93292 0.85811 0.81371 0.80622 0.78724 0.88542 0.88015 0.92555 0.88200 0.89675 0.90994 0.91402 0.91903 0.91366 0.95410 0.79951 0.95340 0.86792 0.95603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.07 71.98 0.65 -3.40 16 2 C 0.08 2.77 2.05 29.85 0.06 2.83 16 3 H 0.12 3.49 6.25 -2.38 -0.01 3.48 16 4 O -0.31 -12.93 9.34 -71.40 -0.67 -13.60 16 5 C 0.30 10.16 7.45 84.80 0.63 10.79 16 6 C -0.22 -6.69 10.04 22.47 0.23 -6.47 16 7 C -0.04 -0.75 10.17 22.44 0.23 -0.53 16 8 C -0.20 -3.27 10.11 22.37 0.23 -3.04 16 9 C 0.13 2.42 11.18 84.63 0.95 3.37 16 10 N -0.55 -15.09 8.65 -308.95 -2.67 -17.76 16 11 C 0.48 19.74 6.06 87.66 0.53 20.27 16 12 O -0.50 -28.37 13.15 15.51 0.20 -28.17 16 13 N -0.60 -19.20 1.72 -818.12 -1.41 -20.61 16 14 C 0.09 1.80 5.17 86.46 0.45 2.24 16 15 C -0.14 -2.52 5.60 30.97 0.17 -2.35 16 16 C -0.12 -2.16 5.48 30.58 0.17 -1.99 16 17 C -0.11 -2.56 5.67 30.46 0.17 -2.39 16 18 C -0.12 -4.36 4.92 30.78 0.15 -4.21 16 19 C 0.15 6.47 2.67 45.28 0.12 6.59 16 20 H 0.05 2.02 7.84 -2.39 -0.02 2.00 16 21 N -0.71 -40.15 3.06 -321.60 -0.98 -41.14 16 22 C -0.22 -13.58 9.84 84.03 0.83 -12.75 16 23 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 24 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 25 N -0.96 -66.20 13.06 21.65 0.28 -65.92 16 26 Si 0.96 51.69 29.55 68.60 2.03 53.72 16 27 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 28 H -0.30 -16.73 7.11 99.48 0.71 -16.02 16 29 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 30 C 0.11 3.81 4.94 86.51 0.43 4.24 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 2.08 5.98 -2.39 -0.01 2.07 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.10 1.64 4.31 -2.39 -0.01 1.63 16 39 H 0.10 1.47 7.97 -2.39 -0.02 1.46 16 40 H 0.06 1.32 5.45 -2.39 -0.01 1.31 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.29 4.49 -2.39 -0.01 1.28 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.50 7.85 -2.39 -0.02 1.48 16 46 H 0.07 2.45 3.68 -2.39 -0.01 2.44 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.37 23.35 6.53 -92.71 -0.61 22.74 16 49 H 0.24 16.11 8.31 -92.71 -0.77 15.34 16 50 H 0.11 3.02 5.08 -2.38 -0.01 3.01 16 51 H 0.03 1.15 8.04 -2.39 -0.02 1.13 16 Total: -1.00 -90.77 386.45 3.59 -87.18 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: 0.35 Total: 37.47 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.46 Total: 8.82 kcal Atomic # 7 Polarization: -140.65 SS G_CDS: -4.78 Total: -145.43 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.46 Total: -41.77 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.03 Total: 53.72 kcal Total: -90.77 3.59 -87.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.705 kcal (2) G-P(sol) polarization free energy of solvation -90.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds