Wall clock time and date at job start Wed Apr 1 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47091 * 2 1 4 4 O 1.42898 * 109.47107 * 239.99955 * 2 1 3 5 5 C 1.35679 * 117.00126 * 90.00171 * 4 2 1 6 6 C 1.38912 * 119.68634 * 179.73212 * 5 4 2 7 7 C 1.38382 * 119.11517 * 179.75286 * 6 5 4 8 8 C 1.38831 * 118.47827 * 0.50486 * 7 6 5 9 9 C 1.38042 * 119.29173 * 359.73413 * 8 7 6 10 10 N 1.31968 * 120.83690 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47115 * 120.00005 * 2 1 3 12 12 O 1.21280 * 119.99810 * 111.87460 * 11 2 1 13 13 N 1.34776 * 119.99515 * 291.87175 * 11 2 1 14 14 C 1.47128 * 120.19039 * 355.58083 * 13 11 2 15 15 C 1.53621 * 107.51956 * 107.88153 * 14 13 11 16 16 C 1.53490 * 108.46683 * 69.77777 * 15 14 13 17 17 C 1.52472 * 109.14795 * 245.78706 * 16 15 14 18 18 C 1.53113 * 109.67456 * 43.92794 * 17 16 15 19 19 C 1.53431 * 109.34842 * 77.03304 * 18 17 16 20 20 H 1.08996 * 109.63456 * 47.55877 * 19 18 17 21 21 N 1.46507 * 109.63278 * 167.95321 * 19 18 17 22 22 C 1.36934 * 119.99624 * 204.60830 * 21 19 18 23 23 H 1.08002 * 120.00441 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99757 * 179.71799 * 22 21 19 25 25 N 1.31627 * 119.99832 * 0.28062 * 24 22 21 26 26 Si 1.86803 * 120.00131 * 180.27305 * 24 22 21 27 27 H 1.48494 * 109.46971 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.46972 * 120.00409 * 26 24 22 29 29 H 1.48507 * 109.46933 * 240.00155 * 26 24 22 30 30 C 1.46524 * 120.16249 * 175.69425 * 13 11 2 31 31 H 1.08997 * 109.47189 * 186.17221 * 1 2 3 32 32 H 1.09001 * 109.46846 * 306.17461 * 1 2 3 33 33 H 1.08997 * 109.47093 * 66.17050 * 1 2 3 34 34 H 1.08000 * 120.44469 * 359.97438 * 6 5 4 35 35 H 1.07994 * 120.76071 * 180.23785 * 7 6 5 36 36 H 1.08001 * 120.34897 * 179.70956 * 8 7 6 37 37 H 1.08004 * 119.58439 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.85024 * 348.37459 * 14 13 11 39 39 H 1.09005 * 109.90177 * 227.41259 * 14 13 11 40 40 H 1.09001 * 109.63510 * 310.08263 * 15 14 13 41 41 H 1.09002 * 109.63463 * 189.47043 * 15 14 13 42 42 H 1.09000 * 109.52481 * 125.88185 * 16 15 14 43 43 H 1.08996 * 109.52061 * 5.68576 * 16 15 14 44 44 H 1.08999 * 109.43372 * 283.86232 * 17 16 15 45 45 H 1.09002 * 109.43351 * 163.99291 * 17 16 15 46 46 H 1.09007 * 109.49150 * 317.07272 * 18 17 16 47 47 H 1.08998 * 109.51045 * 197.01249 * 18 17 16 48 48 H 0.96997 * 120.00196 * 24.59598 * 21 19 18 49 49 H 0.96998 * 119.99487 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.38150 * 172.86161 * 30 13 11 51 51 H 1.09003 * 109.60057 * 53.11012 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2117 0.0829 -2.2742 6 6 2.6796 -0.5139 -3.4380 7 6 2.8800 0.2680 -4.5621 8 6 2.6139 1.6280 -4.4784 9 6 2.1558 2.1546 -3.2875 10 7 1.9697 1.3824 -2.2336 11 6 2.0324 -0.7104 1.2305 12 8 2.6035 -1.7752 1.1253 13 7 1.8470 -0.1624 2.4478 14 6 1.2423 1.1729 2.5737 15 6 -0.1779 0.9870 3.1291 16 6 -0.0724 0.5294 4.5904 17 6 -0.6170 -0.8896 4.7107 18 6 -0.0921 -1.7431 3.5529 19 6 1.3654 -2.1342 3.8297 20 1 1.4573 -2.5068 4.8499 21 7 1.7836 -3.1743 2.8865 22 6 2.8036 -4.0268 3.2153 23 1 3.3000 -3.9322 4.1698 24 6 3.1959 -5.0160 2.3240 25 7 2.5912 -5.1310 1.1605 26 14 4.5822 -6.1838 2.7757 27 1 5.0920 -5.8469 4.1291 28 1 4.0748 -7.5793 2.7715 29 1 5.6813 -6.0537 1.7855 30 6 2.2490 -0.8926 3.6528 31 1 -0.3633 -1.0217 0.1105 32 1 -0.3633 0.6066 0.8296 33 1 -0.3633 0.4152 -0.9400 34 1 2.8808 -1.5746 -3.4664 35 1 3.2392 -0.1690 -5.4820 36 1 2.7642 2.2672 -5.3359 37 1 1.9469 3.2119 -3.2173 38 1 1.1975 1.6526 1.5960 39 1 1.8306 1.7836 3.2588 40 1 -0.7033 0.2310 2.5455 41 1 -0.7174 1.9328 3.0794 42 1 -0.6546 1.1981 5.2244 43 1 0.9717 0.5467 4.9030 44 1 -1.7062 -0.8641 4.6780 45 1 -0.2933 -1.3233 5.6569 46 1 -0.1456 -1.1714 2.6263 47 1 -0.6991 -2.6436 3.4602 48 1 1.3380 -3.2592 2.0291 49 1 2.8652 -5.8224 0.5379 50 1 2.1392 -0.2442 4.5222 51 1 3.2909 -1.2003 3.5634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088414270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:36 Heat of formation + Delta-G solvation = 21.166838 kcal Electronic energy + Delta-G solvation = -33082.618947 eV Core-core repulsion = 28984.690030 eV Total energy + Delta-G solvation = -4097.928917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78194 -40.02457 -38.07410 -36.72113 -34.78402 -33.55477 -32.52827 -32.10323 -31.52113 -29.97697 -29.35141 -26.89473 -26.49948 -24.62283 -23.78037 -23.41956 -22.73935 -22.59734 -20.34712 -19.96008 -18.41327 -18.09946 -16.99444 -16.75790 -16.36860 -15.93503 -15.66789 -15.54213 -15.10686 -14.96141 -14.48192 -14.35397 -14.07609 -13.86992 -13.46755 -13.23872 -13.19176 -13.08544 -12.88195 -12.73818 -12.27112 -11.99274 -11.90310 -11.81500 -11.59370 -11.56025 -11.45060 -10.96924 -10.81042 -10.71246 -10.64458 -10.55887 -10.25307 -10.04982 -9.99382 -9.95517 -9.64558 -9.59701 -9.29618 -8.87164 -8.64549 -8.41582 -7.96907 -6.50376 -5.41784 -2.67163 1.12609 1.22948 2.84540 3.37802 3.59357 3.63723 3.66541 3.72955 3.77833 4.24652 4.73466 4.77431 4.83128 4.87853 4.95658 4.98124 5.08229 5.15103 5.16902 5.20769 5.26750 5.40673 5.47675 5.50485 5.61738 5.64647 5.70734 5.79331 5.80737 5.82857 5.88187 5.91315 5.94342 6.09856 6.14602 6.21146 6.24074 6.28129 6.35297 6.40075 6.40686 6.47576 6.71253 6.80877 6.92896 7.00254 7.26005 7.39466 7.81576 7.93597 8.01874 8.73329 9.02988 9.86439 10.48683 10.82106 11.80257 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.004591 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.335864 B = 6097.420969 C = 8778.502453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 H 0.101 0.899 4 O -0.266 6.266 5 C 0.330 3.670 6 C -0.188 4.188 7 C -0.041 4.041 8 C -0.222 4.222 9 C 0.136 3.864 10 N -0.545 5.545 11 C 0.484 3.516 12 O -0.426 6.426 13 N -0.607 5.607 14 C 0.103 3.897 15 C -0.152 4.152 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.136 4.136 19 C 0.165 3.835 20 H 0.051 0.949 21 N -0.702 5.702 22 C -0.227 4.227 23 H 0.062 0.938 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.893 3.107 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.296 1.296 30 C 0.094 3.906 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.387 0.613 49 H 0.247 0.753 50 H 0.068 0.932 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 20.038 -4.767 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.119 0.881 4 O -0.171 6.171 5 C 0.151 3.849 6 C -0.209 4.209 7 C -0.067 4.067 8 C -0.242 4.242 9 C -0.019 4.019 10 N -0.270 5.270 11 C 0.266 3.734 12 O -0.292 6.292 13 N -0.346 5.346 14 C -0.020 4.020 15 C -0.190 4.190 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.174 4.174 19 C 0.053 3.947 20 H 0.069 0.931 21 N -0.343 5.343 22 C -0.359 4.359 23 H 0.080 0.920 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.726 3.274 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.223 1.223 30 C -0.030 4.030 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.222 0.778 49 H 0.057 0.943 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.089 19.317 -3.935 20.632 hybrid contribution 0.943 -0.682 -0.815 1.421 sum -5.146 18.635 -4.750 19.907 Atomic orbital electron populations 1.22346 0.93235 1.03877 1.03257 1.22154 0.95373 0.97330 0.83652 0.88116 1.86512 1.79125 1.33954 1.17463 1.20008 0.90271 0.87172 0.87465 1.21190 1.05635 1.02620 0.91431 1.21401 0.94265 0.93412 0.97613 1.21913 1.06194 0.96190 0.99936 1.22363 0.93013 0.99036 0.87509 1.67289 1.22307 1.04883 1.32497 1.20082 0.82638 0.87027 0.83633 1.91152 1.35710 1.18004 1.84290 1.47873 1.63545 1.17376 1.05784 1.22005 0.93620 0.84951 1.01472 1.22619 0.97282 1.01583 0.97533 1.21885 1.02004 0.96662 0.95841 1.21469 0.99423 0.95081 0.99247 1.22228 0.97481 0.99164 0.98545 1.20789 0.90794 0.88473 0.94665 0.93096 1.42373 1.40507 1.33660 1.17802 1.19079 1.09686 1.07242 0.99898 0.92023 1.24594 0.99516 0.99665 0.96454 1.69706 1.43538 1.35139 1.08116 0.86320 0.82747 0.81239 0.77082 1.20968 1.22393 1.22330 1.22785 1.00945 0.94780 0.84534 0.91078 0.89923 0.91630 0.83731 0.84322 0.84870 0.82669 0.90417 0.91119 0.89652 0.91733 0.92753 0.90823 0.92855 0.92146 0.90837 0.92387 0.77776 0.94284 0.91398 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.04 37.16 0.34 -2.02 16 2 C 0.08 1.24 2.06 -27.88 -0.06 1.18 16 3 H 0.10 1.50 5.79 -51.93 -0.30 1.20 16 4 O -0.27 -5.06 9.31 -38.52 -0.36 -5.42 16 5 C 0.33 5.24 7.45 -17.12 -0.13 5.12 16 6 C -0.19 -2.60 10.04 -39.28 -0.39 -3.00 16 7 C -0.04 -0.43 10.17 -39.31 -0.40 -0.83 16 8 C -0.22 -2.04 10.11 -39.43 -0.40 -2.44 16 9 C 0.14 1.42 11.18 -17.57 -0.20 1.22 16 10 N -0.55 -7.47 8.65 -13.33 -0.12 -7.59 16 11 C 0.48 9.51 6.13 -10.98 -0.07 9.44 16 12 O -0.43 -11.05 13.01 -14.22 -0.19 -11.23 16 13 N -0.61 -9.78 1.72 -172.52 -0.30 -10.08 16 14 C 0.10 1.18 5.19 -3.38 -0.02 1.16 16 15 C -0.15 -1.57 4.72 -26.15 -0.12 -1.69 16 16 C -0.13 -1.36 5.48 -26.75 -0.15 -1.51 16 17 C -0.11 -1.45 5.67 -26.94 -0.15 -1.61 16 18 C -0.14 -2.27 4.92 -26.45 -0.13 -2.40 16 19 C 0.16 3.31 2.67 -67.49 -0.18 3.13 16 20 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 21 N -0.70 -18.39 3.05 -53.00 -0.16 -18.55 16 22 C -0.23 -6.65 9.84 -15.06 -0.15 -6.80 16 23 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 25 N -0.92 -29.64 13.06 55.49 0.72 -28.91 16 26 Si 0.89 23.92 29.55 -169.99 -5.02 18.90 16 27 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 29 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 30 C 0.09 1.68 4.94 -3.81 -0.02 1.66 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.94 4.01 -51.93 -0.21 0.74 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.08 0.81 5.19 -51.93 -0.27 0.54 16 39 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 40 H 0.09 1.01 3.91 -51.93 -0.20 0.80 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.82 4.49 -51.93 -0.23 0.59 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.77 7.85 -51.93 -0.41 0.37 16 46 H 0.07 1.21 3.59 -51.92 -0.19 1.03 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.39 11.17 6.49 -40.82 -0.26 10.90 16 49 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 50 H 0.07 0.98 5.08 -51.93 -0.26 0.72 16 51 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -36.52 382.25 -9.33 -45.85 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.35 Total: 10.94 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.32 Total: 0.32 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 0.15 Total: -65.13 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.54 Total: -16.65 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.52 -9.33 -45.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.017 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds