Wall clock time and date at job start Wed Apr 1 2020 04:39:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09006 * 109.47091 * 2 1
4 4 O 1.42898 * 109.47107 * 239.99955 * 2 1 3
5 5 C 1.35679 * 117.00126 * 90.00171 * 4 2 1
6 6 C 1.38912 * 119.68634 * 179.73212 * 5 4 2
7 7 C 1.38382 * 119.11517 * 179.75286 * 6 5 4
8 8 C 1.38831 * 118.47827 * 0.50486 * 7 6 5
9 9 C 1.38042 * 119.29173 * 359.73413 * 8 7 6
10 10 N 1.31968 * 120.83690 * 0.02562 * 9 8 7
11 11 C 1.50703 * 109.47115 * 120.00005 * 2 1 3
12 12 O 1.21280 * 119.99810 * 111.87460 * 11 2 1
13 13 N 1.34776 * 119.99515 * 291.87175 * 11 2 1
14 14 C 1.47128 * 120.19039 * 355.58083 * 13 11 2
15 15 C 1.53621 * 107.51956 * 107.88153 * 14 13 11
16 16 C 1.53490 * 108.46683 * 69.77777 * 15 14 13
17 17 C 1.52472 * 109.14795 * 245.78706 * 16 15 14
18 18 C 1.53113 * 109.67456 * 43.92794 * 17 16 15
19 19 C 1.53431 * 109.34842 * 77.03304 * 18 17 16
20 20 H 1.08996 * 109.63456 * 47.55877 * 19 18 17
21 21 N 1.46507 * 109.63278 * 167.95321 * 19 18 17
22 22 C 1.36934 * 119.99624 * 204.60830 * 21 19 18
23 23 H 1.08002 * 120.00441 * 359.97438 * 22 21 19
24 24 C 1.38810 * 119.99757 * 179.71799 * 22 21 19
25 25 N 1.31627 * 119.99832 * 0.28062 * 24 22 21
26 26 Si 1.86803 * 120.00131 * 180.27305 * 24 22 21
27 27 H 1.48494 * 109.46971 * 0.02562 * 26 24 22
28 28 H 1.48492 * 109.46972 * 120.00409 * 26 24 22
29 29 H 1.48507 * 109.46933 * 240.00155 * 26 24 22
30 30 C 1.46524 * 120.16249 * 175.69425 * 13 11 2
31 31 H 1.08997 * 109.47189 * 186.17221 * 1 2 3
32 32 H 1.09001 * 109.46846 * 306.17461 * 1 2 3
33 33 H 1.08997 * 109.47093 * 66.17050 * 1 2 3
34 34 H 1.08000 * 120.44469 * 359.97438 * 6 5 4
35 35 H 1.07994 * 120.76071 * 180.23785 * 7 6 5
36 36 H 1.08001 * 120.34897 * 179.70956 * 8 7 6
37 37 H 1.08004 * 119.58439 * 180.02562 * 9 8 7
38 38 H 1.08997 * 109.85024 * 348.37459 * 14 13 11
39 39 H 1.09005 * 109.90177 * 227.41259 * 14 13 11
40 40 H 1.09001 * 109.63510 * 310.08263 * 15 14 13
41 41 H 1.09002 * 109.63463 * 189.47043 * 15 14 13
42 42 H 1.09000 * 109.52481 * 125.88185 * 16 15 14
43 43 H 1.08996 * 109.52061 * 5.68576 * 16 15 14
44 44 H 1.08999 * 109.43372 * 283.86232 * 17 16 15
45 45 H 1.09002 * 109.43351 * 163.99291 * 17 16 15
46 46 H 1.09007 * 109.49150 * 317.07272 * 18 17 16
47 47 H 1.08998 * 109.51045 * 197.01249 * 18 17 16
48 48 H 0.96997 * 120.00196 * 24.59598 * 21 19 18
49 49 H 0.96998 * 119.99487 * 180.02562 * 25 24 22
50 50 H 1.09003 * 109.38150 * 172.86161 * 30 13 11
51 51 H 1.09003 * 109.60057 * 53.11012 * 30 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0064 -0.6736 -1.1667
5 6 2.2117 0.0829 -2.2742
6 6 2.6796 -0.5139 -3.4380
7 6 2.8800 0.2680 -4.5621
8 6 2.6139 1.6280 -4.4784
9 6 2.1558 2.1546 -3.2875
10 7 1.9697 1.3824 -2.2336
11 6 2.0324 -0.7104 1.2305
12 8 2.6035 -1.7752 1.1253
13 7 1.8470 -0.1624 2.4478
14 6 1.2423 1.1729 2.5737
15 6 -0.1779 0.9870 3.1291
16 6 -0.0724 0.5294 4.5904
17 6 -0.6170 -0.8896 4.7107
18 6 -0.0921 -1.7431 3.5529
19 6 1.3654 -2.1342 3.8297
20 1 1.4573 -2.5068 4.8499
21 7 1.7836 -3.1743 2.8865
22 6 2.8036 -4.0268 3.2153
23 1 3.3000 -3.9322 4.1698
24 6 3.1959 -5.0160 2.3240
25 7 2.5912 -5.1310 1.1605
26 14 4.5822 -6.1838 2.7757
27 1 5.0920 -5.8469 4.1291
28 1 4.0748 -7.5793 2.7715
29 1 5.6813 -6.0537 1.7855
30 6 2.2490 -0.8926 3.6528
31 1 -0.3633 -1.0217 0.1105
32 1 -0.3633 0.6066 0.8296
33 1 -0.3633 0.4152 -0.9400
34 1 2.8808 -1.5746 -3.4664
35 1 3.2392 -0.1690 -5.4820
36 1 2.7642 2.2672 -5.3359
37 1 1.9469 3.2119 -3.2173
38 1 1.1975 1.6526 1.5960
39 1 1.8306 1.7836 3.2588
40 1 -0.7033 0.2310 2.5455
41 1 -0.7174 1.9328 3.0794
42 1 -0.6546 1.1981 5.2244
43 1 0.9717 0.5467 4.9030
44 1 -1.7062 -0.8641 4.6780
45 1 -0.2933 -1.3233 5.6569
46 1 -0.1456 -1.1714 2.6263
47 1 -0.6991 -2.6436 3.4602
48 1 1.3380 -3.2592 2.0291
49 1 2.8652 -5.8224 0.5379
50 1 2.1392 -0.2442 4.5222
51 1 3.2909 -1.2003 3.5634
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088414270.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:35
Heat of formation + Delta-G solvation = -3.722609 kcal
Electronic energy + Delta-G solvation = -33083.698234 eV
Core-core repulsion = 28984.690030 eV
Total energy + Delta-G solvation = -4099.008204 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.96131 -41.20350 -39.24818 -38.10974 -36.47422 -34.96659 -33.79549 -33.43569
-32.87032 -31.12281 -30.91599 -28.39512 -27.76030 -25.91888 -25.34285 -24.50259
-24.07338 -23.67805 -21.74819 -21.13351 -19.58158 -19.41106 -18.96929 -18.14190
-17.42113 -17.01835 -16.89433 -16.69251 -16.66946 -16.32919 -15.86040 -15.66637
-15.40842 -15.09753 -14.79015 -14.65945 -14.62004 -14.24482 -14.11664 -13.95500
-13.56698 -13.28375 -13.16976 -13.00537 -12.92640 -12.84609 -12.72889 -12.68819
-12.54140 -12.21581 -12.15469 -11.87526 -11.75696 -11.63839 -11.42378 -11.13939
-10.93047 -10.90436 -10.79709 -10.58885 -10.25819 -9.50589 -9.45084 -8.60366
-7.74537 -4.97398 0.21867 0.33080 1.40695 1.44001 1.52061 1.65615
1.89973 2.53468 2.63328 2.84180 3.30763 3.53612 3.56120 3.83769
3.92298 3.97600 4.02048 4.06733 4.10070 4.13409 4.23792 4.27899
4.29999 4.33474 4.39518 4.47526 4.60315 4.61519 4.68256 4.70703
4.76329 4.82018 4.88881 4.95513 5.02549 5.05400 5.09178 5.15505
5.23911 5.29331 5.29718 5.47049 5.50493 5.56125 5.57809 5.61067
5.69023 5.89602 6.28191 6.42498 6.65309 6.87597 7.49471 7.59064
8.36748 8.55528 9.49038
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008610 B = 0.004591 C = 0.003189
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3251.335864 B = 6097.420969 C = 8778.502453
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.084 3.916
3 H 0.119 0.881
4 O -0.311 6.311
5 C 0.295 3.705
6 C -0.218 4.218
7 C -0.036 4.036
8 C -0.204 4.204
9 C 0.130 3.870
10 N -0.555 5.555
11 C 0.476 3.524
12 O -0.504 6.504
13 N -0.598 5.598
14 C 0.095 3.905
15 C -0.148 4.148
16 C -0.122 4.122
17 C -0.108 4.108
18 C -0.127 4.127
19 C 0.155 3.845
20 H 0.047 0.953
21 N -0.713 5.713
22 C -0.218 4.218
23 H 0.065 0.935
24 C -0.076 4.076
25 N -0.957 5.957
26 Si 0.957 3.043
27 H -0.266 1.266
28 H -0.295 1.295
29 H -0.306 1.306
30 C 0.106 3.894
31 H 0.040 0.960
32 H 0.112 0.888
33 H 0.075 0.925
34 H 0.125 0.875
35 H 0.170 0.830
36 H 0.177 0.823
37 H 0.196 0.804
38 H 0.092 0.908
39 H 0.097 0.903
40 H 0.068 0.932
41 H 0.103 0.897
42 H 0.085 0.915
43 H 0.069 0.931
44 H 0.070 0.930
45 H 0.060 0.940
46 H 0.076 0.924
47 H 0.029 0.971
48 H 0.370 0.630
49 H 0.238 0.762
50 H 0.114 0.886
51 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.310 24.794 -4.393 26.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.024 3.976
3 H 0.137 0.863
4 O -0.218 6.218
5 C 0.117 3.883
6 C -0.239 4.239
7 C -0.061 4.061
8 C -0.224 4.224
9 C -0.025 4.025
10 N -0.279 5.279
11 C 0.261 3.739
12 O -0.376 6.376
13 N -0.334 5.334
14 C -0.026 4.026
15 C -0.186 4.186
16 C -0.159 4.159
17 C -0.145 4.145
18 C -0.165 4.165
19 C 0.045 3.955
20 H 0.065 0.935
21 N -0.352 5.352
22 C -0.351 4.351
23 H 0.083 0.917
24 C -0.268 4.268
25 N -0.609 5.609
26 Si 0.789 3.211
27 H -0.191 1.191
28 H -0.222 1.222
29 H -0.234 1.234
30 C -0.019 4.019
31 H 0.060 0.940
32 H 0.130 0.870
33 H 0.094 0.906
34 H 0.143 0.857
35 H 0.187 0.813
36 H 0.194 0.806
37 H 0.213 0.787
38 H 0.110 0.890
39 H 0.116 0.884
40 H 0.087 0.913
41 H 0.121 0.879
42 H 0.103 0.897
43 H 0.088 0.912
44 H 0.088 0.912
45 H 0.079 0.921
46 H 0.094 0.906
47 H 0.048 0.952
48 H 0.202 0.798
49 H 0.047 0.953
50 H 0.132 0.868
51 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges -7.123 24.171 -3.485 25.439
hybrid contribution 1.227 -1.953 -0.974 2.503
sum -5.896 22.218 -4.459 23.416
Atomic orbital electron populations
1.22273 0.91404 1.02643 1.04975 1.22134 0.96504 0.97069 0.81880
0.86326 1.86456 1.80272 1.36173 1.18910 1.20201 0.92719 0.88268
0.87069 1.21323 1.07452 1.02443 0.92676 1.21813 0.93004 0.93998
0.97270 1.22414 1.03373 0.95805 1.00790 1.23163 0.91865 1.00432
0.87056 1.67260 1.22657 1.03884 1.34113 1.20835 0.81342 0.86288
0.85419 1.91117 1.39365 1.21465 1.85664 1.47933 1.62492 1.18849
1.04149 1.22436 0.94577 0.82287 1.03330 1.22586 0.96231 1.02998
0.96791 1.21866 1.02022 0.95395 0.96622 1.21429 1.00427 0.95753
0.96940 1.22147 0.94562 0.98944 1.00853 1.21115 0.93423 0.88013
0.92938 0.93543 1.42525 1.39748 1.34942 1.17999 1.19468 1.09446
1.06726 0.99443 0.91663 1.25355 1.02556 1.02131 0.96754 1.69913
1.45569 1.36037 1.09388 0.85281 0.79587 0.79099 0.77148 1.19069
1.22232 1.23437 1.22455 0.97598 0.94961 0.86915 0.94049 0.86965
0.90597 0.85693 0.81275 0.80605 0.78728 0.88986 0.88432 0.91347
0.87882 0.89679 0.91233 0.91156 0.92107 0.90599 0.95164 0.79764
0.95337 0.86833 0.95901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.35 9.04 71.98 0.65 -3.70 16
2 C 0.08 2.86 2.06 29.85 0.06 2.92 16
3 H 0.12 3.48 5.79 -2.38 -0.01 3.47 16
4 O -0.31 -12.85 9.31 -71.06 -0.66 -13.51 16
5 C 0.29 9.81 7.45 84.79 0.63 10.44 16
6 C -0.22 -6.40 10.04 22.47 0.23 -6.17 16
7 C -0.04 -0.68 10.17 22.45 0.23 -0.46 16
8 C -0.20 -3.02 10.11 22.37 0.23 -2.79 16
9 C 0.13 2.29 11.18 84.63 0.95 3.24 16
10 N -0.55 -14.64 8.65 -308.95 -2.67 -17.31 16
11 C 0.48 19.71 6.13 87.66 0.54 20.25 16
12 O -0.50 -28.44 13.01 15.88 0.21 -28.23 16
13 N -0.60 -19.12 1.72 -818.12 -1.41 -20.53 16
14 C 0.09 1.85 5.19 86.47 0.45 2.30 16
15 C -0.15 -2.40 4.72 30.97 0.15 -2.26 16
16 C -0.12 -2.06 5.48 30.58 0.17 -1.89 16
17 C -0.11 -2.47 5.67 30.46 0.17 -2.29 16
18 C -0.13 -4.28 4.92 30.78 0.15 -4.13 16
19 C 0.15 6.41 2.67 45.27 0.12 6.53 16
20 H 0.05 1.94 7.84 -2.39 -0.02 1.92 16
21 N -0.71 -39.72 3.05 -321.58 -0.98 -40.71 16
22 C -0.22 -13.43 9.84 84.03 0.83 -12.60 16
23 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16
24 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16
25 N -0.96 -66.20 13.06 21.65 0.28 -65.92 16
26 Si 0.96 51.74 29.55 68.60 2.03 53.77 16
27 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16
28 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16
29 H -0.31 -16.89 7.11 99.48 0.71 -16.19 16
30 C 0.11 3.78 4.94 86.51 0.43 4.21 16
31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
32 H 0.11 2.34 4.01 -2.39 -0.01 2.33 16
33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16
35 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16
36 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16
37 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16
38 H 0.09 1.58 5.19 -2.39 -0.01 1.57 16
39 H 0.10 1.47 7.97 -2.38 -0.02 1.46 16
40 H 0.07 1.40 3.91 -2.39 -0.01 1.39 16
41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
43 H 0.07 1.23 4.49 -2.39 -0.01 1.22 16
44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
45 H 0.06 1.41 7.85 -2.39 -0.02 1.39 16
46 H 0.08 2.53 3.59 -2.38 -0.01 2.52 16
47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
48 H 0.37 23.09 6.49 -92.71 -0.60 22.49 16
49 H 0.24 16.08 8.31 -92.71 -0.77 15.31 16
50 H 0.11 3.02 5.08 -2.39 -0.01 3.01 16
51 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16
Total: -1.00 -91.01 382.25 3.59 -87.42
By element:
Atomic # 1 Polarization: 35.47 SS G_CDS: 0.36 Total: 35.84 kcal
Atomic # 6 Polarization: 2.75 SS G_CDS: 6.44 Total: 9.18 kcal
Atomic # 7 Polarization: -139.68 SS G_CDS: -4.78 Total: -144.46 kcal
Atomic # 8 Polarization: -41.29 SS G_CDS: -0.45 Total: -41.75 kcal
Atomic # 14 Polarization: 51.74 SS G_CDS: 2.03 Total: 53.77 kcal
Total: -91.01 3.59 -87.42 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088414270.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.698 kcal
(2) G-P(sol) polarization free energy of solvation -91.011 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds