Wall clock time and date at job start Wed Apr 1 2020 04:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47091 * 2 1 4 4 O 1.42898 * 109.47107 * 239.99955 * 2 1 3 5 5 C 1.35679 * 117.00126 * 90.00171 * 4 2 1 6 6 C 1.38912 * 119.68634 * 179.73212 * 5 4 2 7 7 C 1.38382 * 119.11517 * 179.75286 * 6 5 4 8 8 C 1.38831 * 118.47827 * 0.50486 * 7 6 5 9 9 C 1.38042 * 119.29173 * 359.73413 * 8 7 6 10 10 N 1.31968 * 120.83690 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47115 * 120.00005 * 2 1 3 12 12 O 1.21280 * 119.99810 * 111.87460 * 11 2 1 13 13 N 1.34776 * 119.99515 * 291.87175 * 11 2 1 14 14 C 1.47128 * 120.19039 * 355.58083 * 13 11 2 15 15 C 1.53621 * 107.51956 * 107.88153 * 14 13 11 16 16 C 1.53490 * 108.46683 * 69.77777 * 15 14 13 17 17 C 1.52472 * 109.14795 * 245.78706 * 16 15 14 18 18 C 1.53113 * 109.67456 * 43.92794 * 17 16 15 19 19 C 1.53431 * 109.34842 * 77.03304 * 18 17 16 20 20 H 1.08996 * 109.63456 * 47.55877 * 19 18 17 21 21 N 1.46507 * 109.63278 * 167.95321 * 19 18 17 22 22 C 1.36934 * 119.99624 * 204.60830 * 21 19 18 23 23 H 1.08002 * 120.00441 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99757 * 179.71799 * 22 21 19 25 25 N 1.31627 * 119.99832 * 0.28062 * 24 22 21 26 26 Si 1.86803 * 120.00131 * 180.27305 * 24 22 21 27 27 H 1.48494 * 109.46971 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.46972 * 120.00409 * 26 24 22 29 29 H 1.48507 * 109.46933 * 240.00155 * 26 24 22 30 30 C 1.46524 * 120.16249 * 175.69425 * 13 11 2 31 31 H 1.08997 * 109.47189 * 186.17221 * 1 2 3 32 32 H 1.09001 * 109.46846 * 306.17461 * 1 2 3 33 33 H 1.08997 * 109.47093 * 66.17050 * 1 2 3 34 34 H 1.08000 * 120.44469 * 359.97438 * 6 5 4 35 35 H 1.07994 * 120.76071 * 180.23785 * 7 6 5 36 36 H 1.08001 * 120.34897 * 179.70956 * 8 7 6 37 37 H 1.08004 * 119.58439 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.85024 * 348.37459 * 14 13 11 39 39 H 1.09005 * 109.90177 * 227.41259 * 14 13 11 40 40 H 1.09001 * 109.63510 * 310.08263 * 15 14 13 41 41 H 1.09002 * 109.63463 * 189.47043 * 15 14 13 42 42 H 1.09000 * 109.52481 * 125.88185 * 16 15 14 43 43 H 1.08996 * 109.52061 * 5.68576 * 16 15 14 44 44 H 1.08999 * 109.43372 * 283.86232 * 17 16 15 45 45 H 1.09002 * 109.43351 * 163.99291 * 17 16 15 46 46 H 1.09007 * 109.49150 * 317.07272 * 18 17 16 47 47 H 1.08998 * 109.51045 * 197.01249 * 18 17 16 48 48 H 0.96997 * 120.00196 * 24.59598 * 21 19 18 49 49 H 0.96998 * 119.99487 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.38150 * 172.86161 * 30 13 11 51 51 H 1.09003 * 109.60057 * 53.11012 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2117 0.0829 -2.2742 6 6 2.6796 -0.5139 -3.4380 7 6 2.8800 0.2680 -4.5621 8 6 2.6139 1.6280 -4.4784 9 6 2.1558 2.1546 -3.2875 10 7 1.9697 1.3824 -2.2336 11 6 2.0324 -0.7104 1.2305 12 8 2.6035 -1.7752 1.1253 13 7 1.8470 -0.1624 2.4478 14 6 1.2423 1.1729 2.5737 15 6 -0.1779 0.9870 3.1291 16 6 -0.0724 0.5294 4.5904 17 6 -0.6170 -0.8896 4.7107 18 6 -0.0921 -1.7431 3.5529 19 6 1.3654 -2.1342 3.8297 20 1 1.4573 -2.5068 4.8499 21 7 1.7836 -3.1743 2.8865 22 6 2.8036 -4.0268 3.2153 23 1 3.3000 -3.9322 4.1698 24 6 3.1959 -5.0160 2.3240 25 7 2.5912 -5.1310 1.1605 26 14 4.5822 -6.1838 2.7757 27 1 5.0920 -5.8469 4.1291 28 1 4.0748 -7.5793 2.7715 29 1 5.6813 -6.0537 1.7855 30 6 2.2490 -0.8926 3.6528 31 1 -0.3633 -1.0217 0.1105 32 1 -0.3633 0.6066 0.8296 33 1 -0.3633 0.4152 -0.9400 34 1 2.8808 -1.5746 -3.4664 35 1 3.2392 -0.1690 -5.4820 36 1 2.7642 2.2672 -5.3359 37 1 1.9469 3.2119 -3.2173 38 1 1.1975 1.6526 1.5960 39 1 1.8306 1.7836 3.2588 40 1 -0.7033 0.2310 2.5455 41 1 -0.7174 1.9328 3.0794 42 1 -0.6546 1.1981 5.2244 43 1 0.9717 0.5467 4.9030 44 1 -1.7062 -0.8641 4.6780 45 1 -0.2933 -1.3233 5.6569 46 1 -0.1456 -1.1714 2.6263 47 1 -0.6991 -2.6436 3.4602 48 1 1.3380 -3.2592 2.0291 49 1 2.8652 -5.8224 0.5379 50 1 2.1392 -0.2442 4.5222 51 1 3.2909 -1.2003 3.5634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088414270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:35 Heat of formation + Delta-G solvation = -3.722609 kcal Electronic energy + Delta-G solvation = -33083.698234 eV Core-core repulsion = 28984.690030 eV Total energy + Delta-G solvation = -4099.008204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.96131 -41.20350 -39.24818 -38.10974 -36.47422 -34.96659 -33.79549 -33.43569 -32.87032 -31.12281 -30.91599 -28.39512 -27.76030 -25.91888 -25.34285 -24.50259 -24.07338 -23.67805 -21.74819 -21.13351 -19.58158 -19.41106 -18.96929 -18.14190 -17.42113 -17.01835 -16.89433 -16.69251 -16.66946 -16.32919 -15.86040 -15.66637 -15.40842 -15.09753 -14.79015 -14.65945 -14.62004 -14.24482 -14.11664 -13.95500 -13.56698 -13.28375 -13.16976 -13.00537 -12.92640 -12.84609 -12.72889 -12.68819 -12.54140 -12.21581 -12.15469 -11.87526 -11.75696 -11.63839 -11.42378 -11.13939 -10.93047 -10.90436 -10.79709 -10.58885 -10.25819 -9.50589 -9.45084 -8.60366 -7.74537 -4.97398 0.21867 0.33080 1.40695 1.44001 1.52061 1.65615 1.89973 2.53468 2.63328 2.84180 3.30763 3.53612 3.56120 3.83769 3.92298 3.97600 4.02048 4.06733 4.10070 4.13409 4.23792 4.27899 4.29999 4.33474 4.39518 4.47526 4.60315 4.61519 4.68256 4.70703 4.76329 4.82018 4.88881 4.95513 5.02549 5.05400 5.09178 5.15505 5.23911 5.29331 5.29718 5.47049 5.50493 5.56125 5.57809 5.61067 5.69023 5.89602 6.28191 6.42498 6.65309 6.87597 7.49471 7.59064 8.36748 8.55528 9.49038 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.004591 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.335864 B = 6097.420969 C = 8778.502453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.084 3.916 3 H 0.119 0.881 4 O -0.311 6.311 5 C 0.295 3.705 6 C -0.218 4.218 7 C -0.036 4.036 8 C -0.204 4.204 9 C 0.130 3.870 10 N -0.555 5.555 11 C 0.476 3.524 12 O -0.504 6.504 13 N -0.598 5.598 14 C 0.095 3.905 15 C -0.148 4.148 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.127 4.127 19 C 0.155 3.845 20 H 0.047 0.953 21 N -0.713 5.713 22 C -0.218 4.218 23 H 0.065 0.935 24 C -0.076 4.076 25 N -0.957 5.957 26 Si 0.957 3.043 27 H -0.266 1.266 28 H -0.295 1.295 29 H -0.306 1.306 30 C 0.106 3.894 31 H 0.040 0.960 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.029 0.971 48 H 0.370 0.630 49 H 0.238 0.762 50 H 0.114 0.886 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 24.794 -4.393 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.137 0.863 4 O -0.218 6.218 5 C 0.117 3.883 6 C -0.239 4.239 7 C -0.061 4.061 8 C -0.224 4.224 9 C -0.025 4.025 10 N -0.279 5.279 11 C 0.261 3.739 12 O -0.376 6.376 13 N -0.334 5.334 14 C -0.026 4.026 15 C -0.186 4.186 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.165 4.165 19 C 0.045 3.955 20 H 0.065 0.935 21 N -0.352 5.352 22 C -0.351 4.351 23 H 0.083 0.917 24 C -0.268 4.268 25 N -0.609 5.609 26 Si 0.789 3.211 27 H -0.191 1.191 28 H -0.222 1.222 29 H -0.234 1.234 30 C -0.019 4.019 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.187 0.813 36 H 0.194 0.806 37 H 0.213 0.787 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.048 0.952 48 H 0.202 0.798 49 H 0.047 0.953 50 H 0.132 0.868 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.123 24.171 -3.485 25.439 hybrid contribution 1.227 -1.953 -0.974 2.503 sum -5.896 22.218 -4.459 23.416 Atomic orbital electron populations 1.22273 0.91404 1.02643 1.04975 1.22134 0.96504 0.97069 0.81880 0.86326 1.86456 1.80272 1.36173 1.18910 1.20201 0.92719 0.88268 0.87069 1.21323 1.07452 1.02443 0.92676 1.21813 0.93004 0.93998 0.97270 1.22414 1.03373 0.95805 1.00790 1.23163 0.91865 1.00432 0.87056 1.67260 1.22657 1.03884 1.34113 1.20835 0.81342 0.86288 0.85419 1.91117 1.39365 1.21465 1.85664 1.47933 1.62492 1.18849 1.04149 1.22436 0.94577 0.82287 1.03330 1.22586 0.96231 1.02998 0.96791 1.21866 1.02022 0.95395 0.96622 1.21429 1.00427 0.95753 0.96940 1.22147 0.94562 0.98944 1.00853 1.21115 0.93423 0.88013 0.92938 0.93543 1.42525 1.39748 1.34942 1.17999 1.19468 1.09446 1.06726 0.99443 0.91663 1.25355 1.02556 1.02131 0.96754 1.69913 1.45569 1.36037 1.09388 0.85281 0.79587 0.79099 0.77148 1.19069 1.22232 1.23437 1.22455 0.97598 0.94961 0.86915 0.94049 0.86965 0.90597 0.85693 0.81275 0.80605 0.78728 0.88986 0.88432 0.91347 0.87882 0.89679 0.91233 0.91156 0.92107 0.90599 0.95164 0.79764 0.95337 0.86833 0.95901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 9.04 71.98 0.65 -3.70 16 2 C 0.08 2.86 2.06 29.85 0.06 2.92 16 3 H 0.12 3.48 5.79 -2.38 -0.01 3.47 16 4 O -0.31 -12.85 9.31 -71.06 -0.66 -13.51 16 5 C 0.29 9.81 7.45 84.79 0.63 10.44 16 6 C -0.22 -6.40 10.04 22.47 0.23 -6.17 16 7 C -0.04 -0.68 10.17 22.45 0.23 -0.46 16 8 C -0.20 -3.02 10.11 22.37 0.23 -2.79 16 9 C 0.13 2.29 11.18 84.63 0.95 3.24 16 10 N -0.55 -14.64 8.65 -308.95 -2.67 -17.31 16 11 C 0.48 19.71 6.13 87.66 0.54 20.25 16 12 O -0.50 -28.44 13.01 15.88 0.21 -28.23 16 13 N -0.60 -19.12 1.72 -818.12 -1.41 -20.53 16 14 C 0.09 1.85 5.19 86.47 0.45 2.30 16 15 C -0.15 -2.40 4.72 30.97 0.15 -2.26 16 16 C -0.12 -2.06 5.48 30.58 0.17 -1.89 16 17 C -0.11 -2.47 5.67 30.46 0.17 -2.29 16 18 C -0.13 -4.28 4.92 30.78 0.15 -4.13 16 19 C 0.15 6.41 2.67 45.27 0.12 6.53 16 20 H 0.05 1.94 7.84 -2.39 -0.02 1.92 16 21 N -0.71 -39.72 3.05 -321.58 -0.98 -40.71 16 22 C -0.22 -13.43 9.84 84.03 0.83 -12.60 16 23 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 25 N -0.96 -66.20 13.06 21.65 0.28 -65.92 16 26 Si 0.96 51.74 29.55 68.60 2.03 53.77 16 27 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 28 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 29 H -0.31 -16.89 7.11 99.48 0.71 -16.19 16 30 C 0.11 3.78 4.94 86.51 0.43 4.21 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 2.34 4.01 -2.39 -0.01 2.33 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.09 1.58 5.19 -2.39 -0.01 1.57 16 39 H 0.10 1.47 7.97 -2.38 -0.02 1.46 16 40 H 0.07 1.40 3.91 -2.39 -0.01 1.39 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.23 4.49 -2.39 -0.01 1.22 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.41 7.85 -2.39 -0.02 1.39 16 46 H 0.08 2.53 3.59 -2.38 -0.01 2.52 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.37 23.09 6.49 -92.71 -0.60 22.49 16 49 H 0.24 16.08 8.31 -92.71 -0.77 15.31 16 50 H 0.11 3.02 5.08 -2.39 -0.01 3.01 16 51 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16 Total: -1.00 -91.01 382.25 3.59 -87.42 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.36 Total: 35.84 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.44 Total: 9.18 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -4.78 Total: -144.46 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.45 Total: -41.75 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.03 Total: 53.77 kcal Total: -91.01 3.59 -87.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.698 kcal (2) G-P(sol) polarization free energy of solvation -91.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds