Wall clock time and date at job start Wed Apr 1 2020 04:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46694 * 2 1 4 4 C 1.50692 * 109.46822 * 119.99855 * 2 1 3 5 5 O 1.21279 * 120.00439 * 111.48804 * 4 2 1 6 6 N 1.34781 * 120.00004 * 291.48301 * 4 2 1 7 7 C 1.46931 * 120.63081 * 5.36408 * 6 4 2 8 8 C 1.53193 * 108.77376 * 233.58411 * 7 6 4 9 9 C 1.53035 * 109.31610 * 305.36716 * 8 7 6 10 10 O 1.42891 * 109.46253 * 181.38635 * 9 8 7 11 11 C 1.42903 * 114.00478 * 149.99673 * 10 9 8 12 12 C 1.53498 * 114.20918 * 210.00296 * 11 10 9 13 13 N 1.47075 * 87.98243 * 220.15001 * 12 11 10 14 14 C 1.36933 * 136.05327 * 206.86617 * 13 12 11 15 15 H 1.08004 * 120.00010 * 357.65290 * 14 13 12 16 16 C 1.38807 * 120.00078 * 177.65599 * 14 13 12 17 17 N 1.31620 * 120.00044 * 7.55319 * 16 14 13 18 18 Si 1.86808 * 120.00279 * 187.55368 * 16 14 13 19 19 H 1.48500 * 109.46922 * 94.95876 * 18 16 14 20 20 H 1.48504 * 109.46825 * 214.96091 * 18 16 14 21 21 H 1.48502 * 109.46621 * 334.95870 * 18 16 14 22 22 C 1.47060 * 87.88638 * 27.11895 * 13 12 11 23 23 C 1.53042 * 109.53872 * 61.36226 * 9 8 7 24 24 C 1.46930 * 120.63101 * 185.34192 * 6 4 2 25 25 N 1.46494 * 109.47275 * 239.99977 * 2 1 3 26 26 C 1.36345 * 125.63619 * 299.69594 * 25 2 1 27 27 C 1.34852 * 108.22109 * 179.83314 * 26 25 2 28 28 C 1.40891 * 107.41405 * 0.41758 * 27 26 25 29 29 C 1.34855 * 107.41887 * 359.74154 * 28 27 26 30 30 H 1.08995 * 109.47115 * 187.82523 * 1 2 3 31 31 H 1.09001 * 109.47315 * 307.82666 * 1 2 3 32 32 H 1.09005 * 109.46857 * 67.82607 * 1 2 3 33 33 H 1.09002 * 109.58297 * 113.80108 * 7 6 4 34 34 H 1.09000 * 109.69865 * 353.44215 * 7 6 4 35 35 H 1.09002 * 109.49677 * 185.41234 * 8 7 6 36 36 H 1.08999 * 109.49537 * 65.31554 * 8 7 6 37 37 H 1.09008 * 109.45943 * 301.36043 * 9 8 7 38 38 H 1.08998 * 113.27737 * 343.06896 * 11 10 9 39 39 H 1.08992 * 113.46741 * 105.37094 * 12 11 10 40 40 H 1.09002 * 113.52081 * 334.93100 * 12 11 10 41 41 H 0.97005 * 120.00415 * 180.02562 * 17 16 14 42 42 H 1.09004 * 113.46856 * 87.66213 * 22 13 12 43 43 H 1.08998 * 113.46694 * 218.09971 * 22 13 12 44 44 H 1.09004 * 109.49825 * 58.59181 * 23 9 8 45 45 H 1.09003 * 109.49821 * 178.68349 * 23 9 8 46 46 H 1.09000 * 109.58774 * 246.20077 * 24 6 4 47 47 H 1.09004 * 109.58553 * 6.48249 * 24 6 4 48 48 H 1.08004 * 125.88732 * 359.95820 * 26 25 2 49 49 H 1.07997 * 126.28954 * 180.16061 * 27 26 25 50 50 H 1.08000 * 126.29189 * 179.73307 * 28 27 26 51 51 H 1.07993 * 125.89052 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5972 -1.7785 1.1260 6 7 1.8539 -0.1586 2.4471 7 6 1.0704 1.0747 2.6023 8 6 1.9161 2.1041 3.3585 9 6 2.3961 1.4943 4.6774 10 8 3.1584 2.4629 5.4003 11 6 3.0874 2.3168 6.8200 12 6 3.2353 3.6328 7.5963 13 7 4.0592 2.9039 8.5726 14 6 4.3578 3.0334 9.9027 15 1 3.9625 3.8656 10.4663 16 6 5.1684 2.0951 10.5266 17 7 5.7702 1.1671 9.8132 18 14 5.4052 2.1496 12.3788 19 1 4.4402 1.2266 13.0285 20 1 6.7908 1.7327 12.7131 21 1 5.1730 3.5327 12.8670 22 6 4.4264 1.9786 7.4901 23 6 3.2690 0.2710 4.3881 24 6 2.4387 -0.7793 3.6436 25 7 2.0184 -0.6906 -1.1961 26 6 1.7657 -1.9902 -1.5219 27 6 2.3801 -2.2587 -2.6919 28 6 3.0442 -1.0846 -3.0987 29 6 2.8056 -0.1416 -2.1646 30 1 -0.3633 -1.0180 0.1399 31 1 -0.3634 0.6302 0.8117 32 1 -0.3633 0.3879 -0.9517 33 1 0.1625 0.8622 3.1667 34 1 0.8068 1.4684 1.6206 35 1 1.3138 2.9889 3.5646 36 1 2.7777 2.3832 2.7519 37 1 1.5343 1.1925 5.2728 38 1 2.2540 1.6957 7.1480 39 1 2.2964 4.0008 8.0097 40 1 3.7852 4.4000 7.0512 41 1 6.3364 0.5111 10.2493 42 1 5.2937 2.3045 6.9159 43 1 4.5000 0.9401 7.8131 44 1 4.1179 0.5673 3.7718 45 1 3.6296 -0.1490 5.3271 46 1 1.6423 -1.1429 4.2930 47 1 3.0779 -1.6114 3.3483 48 1 1.1737 -2.6842 -0.9437 49 1 2.3688 -3.2018 -3.2181 50 1 3.6357 -0.9623 -3.9939 51 1 3.1746 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093529075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:17 Heat of formation + Delta-G solvation = 47.951587 kcal Electronic energy + Delta-G solvation = -30736.717303 eV Core-core repulsion = 26639.949860 eV Total energy + Delta-G solvation = -4096.767443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71759 -40.31248 -38.88630 -37.54088 -35.68760 -34.76978 -32.32223 -31.61730 -31.43329 -29.55302 -28.84824 -27.59386 -25.96530 -24.64341 -24.24299 -23.50699 -22.96751 -21.47259 -20.70855 -20.26046 -19.65690 -19.23413 -17.70618 -17.61157 -16.88208 -16.43693 -16.11666 -15.74589 -15.06095 -14.81314 -14.74887 -14.56672 -14.40110 -14.02677 -13.83195 -13.76138 -13.64649 -13.39723 -13.12936 -12.77818 -12.75171 -12.51893 -12.28272 -12.24615 -12.14068 -11.99733 -11.98266 -11.85363 -11.48515 -11.25352 -11.10036 -10.97301 -10.70742 -10.60009 -10.36881 -10.20265 -10.07451 -9.55644 -9.07985 -8.83316 -8.78137 -8.69248 -8.24286 -6.97078 -5.83926 -3.15945 1.95270 2.15923 2.42405 2.82034 2.97120 3.35466 3.39888 3.42953 3.74838 3.85384 4.18445 4.26416 4.37363 4.43159 4.64193 4.72924 4.75041 4.89952 4.98062 4.99966 5.03334 5.12163 5.14650 5.23935 5.26644 5.30312 5.39488 5.42804 5.48756 5.51365 5.54456 5.55469 5.65630 5.69114 5.80020 5.91225 6.14769 6.16757 6.18309 6.24090 6.38656 6.52739 6.59261 6.86877 6.90005 7.02918 7.08445 7.15765 7.18720 7.46188 7.69832 7.78976 7.91197 8.97012 9.63452 10.56622 11.34116 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.001868 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.760362 B =14988.507475 C =15421.094778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 H 0.122 0.878 4 C 0.505 3.495 5 O -0.519 6.519 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.134 4.134 9 C 0.093 3.907 10 O -0.369 6.369 11 C 0.029 3.971 12 C 0.118 3.882 13 N -0.606 5.606 14 C -0.219 4.219 15 H 0.084 0.916 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.915 3.085 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.144 3.856 23 C -0.157 4.157 24 C 0.115 3.885 25 N -0.435 5.435 26 C 0.020 3.980 27 C -0.211 4.211 28 C -0.196 4.196 29 C -0.022 4.022 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.255 0.745 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.155 0.845 49 H 0.133 0.867 50 H 0.134 0.866 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 -1.826 -23.241 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 H 0.140 0.860 4 C 0.291 3.709 5 O -0.393 6.393 6 N -0.341 5.341 7 C -0.022 4.022 8 C -0.172 4.172 9 C 0.035 3.965 10 O -0.286 6.286 11 C -0.029 4.029 12 C -0.008 4.008 13 N -0.334 5.334 14 C -0.346 4.346 15 H 0.101 0.899 16 C -0.204 4.204 17 N -0.564 5.564 18 Si 0.745 3.255 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.196 4.196 24 C -0.006 4.006 25 N -0.112 5.112 26 C -0.109 4.109 27 C -0.235 4.235 28 C -0.221 4.221 29 C -0.150 4.150 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.172 0.828 49 H 0.151 0.849 50 H 0.152 0.848 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.585 -2.176 -22.760 26.595 hybrid contribution 0.336 -0.048 1.220 1.266 sum -13.249 -2.224 -21.540 25.386 Atomic orbital electron populations 1.22329 0.91146 1.04401 1.04523 1.21246 0.96926 0.97434 0.83503 0.86044 1.20579 0.79861 0.86070 0.84426 1.90775 1.41863 1.21079 1.85627 1.48116 1.52750 1.26523 1.06689 1.22047 0.94393 0.84126 1.01644 1.22024 1.00688 0.98291 0.96247 1.21976 0.93274 0.88800 0.92496 1.87921 1.69961 1.52274 1.18489 1.24770 1.00497 0.99783 0.77859 1.22587 0.94901 0.93732 0.89604 1.45311 1.53687 1.30523 1.03842 1.18917 1.26275 1.08165 0.81239 0.89862 1.24841 0.99154 0.98089 0.98325 1.69860 1.33778 1.18860 1.33913 0.86058 0.77200 0.77650 0.84606 1.21456 1.21640 1.20486 1.22517 0.92113 0.97046 0.86579 1.22489 0.99321 0.95941 1.01809 1.21669 0.97649 0.96379 0.84953 1.43721 1.40204 1.10498 1.16768 1.21658 1.05693 0.85430 0.98163 1.20853 1.05218 0.99297 0.98171 1.20857 1.06217 0.93864 1.01128 1.21781 1.01584 0.99954 0.91683 0.91013 0.89379 0.90183 0.90347 0.89010 0.89582 0.90559 0.92154 0.89666 0.93983 0.94212 0.93531 0.95027 0.91376 0.90713 0.89431 0.91033 0.88651 0.82779 0.84922 0.84844 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 8.74 37.16 0.32 -0.50 16 2 C 0.12 0.88 2.51 -69.09 -0.17 0.70 16 3 H 0.12 0.67 7.42 -51.93 -0.39 0.29 16 4 C 0.51 5.31 7.01 -10.99 -0.08 5.23 16 5 O -0.52 -7.61 14.72 5.56 0.08 -7.53 16 6 N -0.61 -5.50 2.97 -172.76 -0.51 -6.01 16 7 C 0.10 0.62 5.32 -3.71 -0.02 0.60 16 8 C -0.13 -1.14 5.73 -26.61 -0.15 -1.29 16 9 C 0.09 1.10 2.56 -26.69 -0.07 1.03 16 10 O -0.37 -5.94 10.04 -35.23 -0.35 -6.30 16 11 C 0.03 0.55 4.61 -26.22 -0.12 0.43 16 12 C 0.12 2.46 8.52 -8.50 -0.07 2.39 16 13 N -0.61 -15.72 3.78 -184.78 -0.70 -16.42 16 14 C -0.22 -6.15 10.73 -15.06 -0.16 -6.32 16 15 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -27.29 11.58 55.49 0.64 -26.65 16 18 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.14 3.41 7.23 -8.50 -0.06 3.35 16 23 C -0.16 -1.90 5.69 -26.61 -0.15 -2.05 16 24 C 0.12 1.21 6.42 -3.71 -0.02 1.18 16 25 N -0.43 -4.31 2.46 -111.26 -0.27 -4.59 16 26 C 0.02 0.22 9.54 -16.75 -0.16 0.06 16 27 C -0.21 -2.29 10.86 -39.78 -0.43 -2.73 16 28 C -0.20 -2.02 10.86 -39.78 -0.43 -2.45 16 29 C -0.02 -0.21 11.39 -16.75 -0.19 -0.40 16 30 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 31 H 0.09 0.26 5.49 -51.93 -0.28 -0.02 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.34 4.35 -51.93 -0.23 0.11 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.67 7.44 -51.92 -0.39 0.28 16 38 H 0.09 1.50 7.47 -51.93 -0.39 1.11 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.76 7.20 -51.93 -0.37 1.38 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.10 1.15 7.04 -51.93 -0.37 0.78 16 48 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 49 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 50 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 51 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -35.06 403.99 -10.42 -45.48 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.30 Total: 0.05 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.07 Total: -1.06 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.84 Total: -53.66 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.27 Total: -13.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.06 -10.42 -45.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093529075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.431 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds