Wall clock time and date at job start Wed Apr 1 2020 04:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46694 * 2 1 4 4 C 1.50692 * 109.46822 * 119.99855 * 2 1 3 5 5 O 1.21279 * 120.00439 * 111.48804 * 4 2 1 6 6 N 1.34781 * 120.00004 * 291.48301 * 4 2 1 7 7 C 1.46931 * 120.63081 * 5.36408 * 6 4 2 8 8 C 1.53193 * 108.77376 * 233.58411 * 7 6 4 9 9 C 1.53035 * 109.31610 * 305.36716 * 8 7 6 10 10 O 1.42891 * 109.46253 * 181.38635 * 9 8 7 11 11 C 1.42903 * 114.00478 * 149.99673 * 10 9 8 12 12 C 1.53498 * 114.20918 * 210.00296 * 11 10 9 13 13 N 1.47075 * 87.98243 * 220.15001 * 12 11 10 14 14 C 1.36933 * 136.05327 * 206.86617 * 13 12 11 15 15 H 1.08004 * 120.00010 * 357.65290 * 14 13 12 16 16 C 1.38807 * 120.00078 * 177.65599 * 14 13 12 17 17 N 1.31620 * 120.00044 * 7.55319 * 16 14 13 18 18 Si 1.86808 * 120.00279 * 187.55368 * 16 14 13 19 19 H 1.48500 * 109.46922 * 94.95876 * 18 16 14 20 20 H 1.48504 * 109.46825 * 214.96091 * 18 16 14 21 21 H 1.48502 * 109.46621 * 334.95870 * 18 16 14 22 22 C 1.47060 * 87.88638 * 27.11895 * 13 12 11 23 23 C 1.53042 * 109.53872 * 61.36226 * 9 8 7 24 24 C 1.46930 * 120.63101 * 185.34192 * 6 4 2 25 25 N 1.46494 * 109.47275 * 239.99977 * 2 1 3 26 26 C 1.36345 * 125.63619 * 299.69594 * 25 2 1 27 27 C 1.34852 * 108.22109 * 179.83314 * 26 25 2 28 28 C 1.40891 * 107.41405 * 0.41758 * 27 26 25 29 29 C 1.34855 * 107.41887 * 359.74154 * 28 27 26 30 30 H 1.08995 * 109.47115 * 187.82523 * 1 2 3 31 31 H 1.09001 * 109.47315 * 307.82666 * 1 2 3 32 32 H 1.09005 * 109.46857 * 67.82607 * 1 2 3 33 33 H 1.09002 * 109.58297 * 113.80108 * 7 6 4 34 34 H 1.09000 * 109.69865 * 353.44215 * 7 6 4 35 35 H 1.09002 * 109.49677 * 185.41234 * 8 7 6 36 36 H 1.08999 * 109.49537 * 65.31554 * 8 7 6 37 37 H 1.09008 * 109.45943 * 301.36043 * 9 8 7 38 38 H 1.08998 * 113.27737 * 343.06896 * 11 10 9 39 39 H 1.08992 * 113.46741 * 105.37094 * 12 11 10 40 40 H 1.09002 * 113.52081 * 334.93100 * 12 11 10 41 41 H 0.97005 * 120.00415 * 180.02562 * 17 16 14 42 42 H 1.09004 * 113.46856 * 87.66213 * 22 13 12 43 43 H 1.08998 * 113.46694 * 218.09971 * 22 13 12 44 44 H 1.09004 * 109.49825 * 58.59181 * 23 9 8 45 45 H 1.09003 * 109.49821 * 178.68349 * 23 9 8 46 46 H 1.09000 * 109.58774 * 246.20077 * 24 6 4 47 47 H 1.09004 * 109.58553 * 6.48249 * 24 6 4 48 48 H 1.08004 * 125.88732 * 359.95820 * 26 25 2 49 49 H 1.07997 * 126.28954 * 180.16061 * 27 26 25 50 50 H 1.08000 * 126.29189 * 179.73307 * 28 27 26 51 51 H 1.07993 * 125.89052 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5972 -1.7785 1.1260 6 7 1.8539 -0.1586 2.4471 7 6 1.0704 1.0747 2.6023 8 6 1.9161 2.1041 3.3585 9 6 2.3961 1.4943 4.6774 10 8 3.1584 2.4629 5.4003 11 6 3.0874 2.3168 6.8200 12 6 3.2353 3.6328 7.5963 13 7 4.0592 2.9039 8.5726 14 6 4.3578 3.0334 9.9027 15 1 3.9625 3.8656 10.4663 16 6 5.1684 2.0951 10.5266 17 7 5.7702 1.1671 9.8132 18 14 5.4052 2.1496 12.3788 19 1 4.4402 1.2266 13.0285 20 1 6.7908 1.7327 12.7131 21 1 5.1730 3.5327 12.8670 22 6 4.4264 1.9786 7.4901 23 6 3.2690 0.2710 4.3881 24 6 2.4387 -0.7793 3.6436 25 7 2.0184 -0.6906 -1.1961 26 6 1.7657 -1.9902 -1.5219 27 6 2.3801 -2.2587 -2.6919 28 6 3.0442 -1.0846 -3.0987 29 6 2.8056 -0.1416 -2.1646 30 1 -0.3633 -1.0180 0.1399 31 1 -0.3634 0.6302 0.8117 32 1 -0.3633 0.3879 -0.9517 33 1 0.1625 0.8622 3.1667 34 1 0.8068 1.4684 1.6206 35 1 1.3138 2.9889 3.5646 36 1 2.7777 2.3832 2.7519 37 1 1.5343 1.1925 5.2728 38 1 2.2540 1.6957 7.1480 39 1 2.2964 4.0008 8.0097 40 1 3.7852 4.4000 7.0512 41 1 6.3364 0.5111 10.2493 42 1 5.2937 2.3045 6.9159 43 1 4.5000 0.9401 7.8131 44 1 4.1179 0.5673 3.7718 45 1 3.6296 -0.1490 5.3271 46 1 1.6423 -1.1429 4.2930 47 1 3.0779 -1.6114 3.3483 48 1 1.1737 -2.6842 -0.9437 49 1 2.3688 -3.2018 -3.2181 50 1 3.6357 -0.9623 -3.9939 51 1 3.1746 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093529075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:16 Heat of formation + Delta-G solvation = 26.414014 kcal Electronic energy + Delta-G solvation = -30737.651242 eV Core-core repulsion = 26639.949860 eV Total energy + Delta-G solvation = -4097.701382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.43791 -41.13927 -40.29966 -38.72330 -36.90667 -35.46042 -34.21410 -32.73018 -32.19804 -30.19738 -29.58638 -29.51409 -26.77353 -26.40843 -25.28260 -24.48305 -24.29036 -22.30640 -21.50104 -21.37055 -20.91030 -20.08430 -18.82025 -18.44553 -18.37091 -17.76082 -17.00332 -16.88512 -16.46297 -16.01777 -15.82480 -15.52486 -15.32258 -15.15066 -14.98224 -14.60641 -14.53744 -14.42028 -14.29403 -13.70657 -13.60572 -13.42774 -13.35107 -13.22750 -13.19601 -12.96411 -12.92046 -12.88422 -12.80208 -12.70181 -12.59768 -12.27772 -12.20617 -11.96969 -11.81493 -11.51839 -11.35935 -10.99259 -10.87448 -10.20403 -9.84750 -9.52335 -9.02489 -9.00368 -7.97146 -5.31336 1.20362 1.39720 1.44477 1.47044 1.56199 1.74693 2.13678 2.18764 2.38634 2.69076 3.18114 3.26455 3.48974 3.65547 3.70953 3.75608 3.78194 3.89785 3.98800 4.08369 4.11995 4.14305 4.25419 4.37904 4.39502 4.42376 4.55724 4.57211 4.66133 4.72350 4.73786 4.75807 4.80434 4.81165 4.86628 4.90449 4.97383 5.11017 5.13829 5.16454 5.21233 5.33471 5.40169 5.42323 5.44162 5.44921 5.83733 6.11364 6.17691 6.32853 6.44587 6.50078 6.83799 6.93656 7.53403 8.53311 9.21248 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.001868 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.760362 B =14988.507475 C =15421.094778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.116 3.884 3 H 0.151 0.849 4 C 0.501 3.499 5 O -0.570 6.570 6 N -0.602 5.602 7 C 0.100 3.900 8 C -0.127 4.127 9 C 0.083 3.917 10 O -0.377 6.377 11 C 0.070 3.930 12 C 0.118 3.882 13 N -0.637 5.637 14 C -0.231 4.231 15 H 0.092 0.908 16 C -0.069 4.069 17 N -0.955 5.955 18 Si 0.986 3.014 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.263 1.263 22 C 0.138 3.862 23 C -0.151 4.151 24 C 0.122 3.878 25 N -0.438 5.438 26 C 0.003 3.997 27 C -0.230 4.230 28 C -0.218 4.218 29 C -0.023 4.023 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.249 0.751 42 H 0.007 0.993 43 H 0.037 0.963 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.153 0.847 49 H 0.138 0.862 50 H 0.146 0.854 51 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 0.337 -23.753 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.168 0.832 4 C 0.288 3.712 5 O -0.449 6.449 6 N -0.335 5.335 7 C -0.021 4.021 8 C -0.165 4.165 9 C 0.026 3.974 10 O -0.294 6.294 11 C 0.011 3.989 12 C -0.007 4.007 13 N -0.365 5.365 14 C -0.359 4.359 15 H 0.110 0.890 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.813 3.187 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.188 1.188 22 C 0.011 3.989 23 C -0.190 4.190 24 C -0.001 4.001 25 N -0.115 5.115 26 C -0.127 4.127 27 C -0.255 4.255 28 C -0.242 4.242 29 C -0.152 4.152 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.170 0.830 49 H 0.156 0.844 50 H 0.163 0.837 51 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.474 0.044 -23.288 28.526 hybrid contribution 1.254 -0.706 1.303 1.942 sum -15.220 -0.662 -21.985 26.747 Atomic orbital electron populations 1.22352 0.88782 1.04444 1.06168 1.21530 0.98640 0.97789 0.81040 0.83185 1.21181 0.78963 0.85582 0.85480 1.90758 1.44259 1.23500 1.86385 1.48188 1.52367 1.27230 1.05748 1.22370 0.94069 0.82035 1.03670 1.22015 1.01031 0.99496 0.93952 1.22361 0.92994 0.87931 0.94149 1.87912 1.71170 1.53465 1.16879 1.24123 0.97398 0.98021 0.79330 1.22702 0.94940 0.94356 0.88697 1.45700 1.54580 1.32151 1.04101 1.19372 1.25636 1.08138 0.82723 0.89050 1.25768 0.99389 0.98047 1.03014 1.70064 1.34826 1.19797 1.35627 0.84957 0.76504 0.78301 0.78935 1.20937 1.22334 1.18779 1.22487 0.94434 0.95016 0.86932 1.22386 0.99243 0.96833 1.00562 1.21467 0.97674 0.95195 0.85727 1.43927 1.40011 1.10222 1.17359 1.21751 1.06264 0.86333 0.98366 1.21128 1.05671 1.00047 0.98619 1.21155 1.06892 0.93985 1.02203 1.22286 1.00726 1.01004 0.91179 0.92195 0.86585 0.89212 0.87807 0.85597 0.87444 0.91430 0.90367 0.87887 0.91547 0.94040 0.94175 0.97529 0.94483 0.92604 0.91730 0.89331 0.90977 0.82953 0.84402 0.83657 0.79601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.74 71.98 0.63 -0.38 16 2 C 0.12 1.43 2.51 44.25 0.11 1.54 16 3 H 0.15 0.98 7.42 -2.38 -0.02 0.97 16 4 C 0.50 9.81 7.01 87.65 0.61 10.43 16 5 O -0.57 -17.04 14.72 -3.03 -0.04 -17.09 16 6 N -0.60 -9.57 2.97 -818.89 -2.43 -12.00 16 7 C 0.10 0.76 5.32 86.36 0.46 1.22 16 8 C -0.13 -1.65 5.73 30.67 0.18 -1.47 16 9 C 0.08 1.78 2.56 30.62 0.08 1.86 16 10 O -0.38 -11.53 10.04 -148.98 -1.50 -13.02 16 11 C 0.07 2.54 4.61 30.93 0.14 2.69 16 12 C 0.12 4.75 8.52 83.18 0.71 5.46 16 13 N -0.64 -33.29 3.78 -739.01 -2.79 -36.08 16 14 C -0.23 -13.03 10.73 84.03 0.90 -12.13 16 15 H 0.09 4.84 7.84 -2.91 -0.02 4.82 16 16 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 17 N -0.95 -58.69 11.58 21.65 0.25 -58.43 16 18 Si 0.99 45.55 29.56 68.60 2.03 47.58 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 C 0.14 6.75 7.23 83.18 0.60 7.35 16 23 C -0.15 -3.66 5.69 30.67 0.17 -3.49 16 24 C 0.12 2.49 6.42 86.36 0.55 3.05 16 25 N -0.44 -8.08 2.46 -505.91 -1.25 -9.33 16 26 C 0.00 0.06 9.54 83.21 0.79 0.85 16 27 C -0.23 -5.08 10.86 22.14 0.24 -4.84 16 28 C -0.22 -4.37 10.86 22.14 0.24 -4.13 16 29 C -0.02 -0.41 11.39 83.21 0.95 0.53 16 30 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 31 H 0.12 0.05 5.49 -2.39 -0.01 0.04 16 32 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.13 0.17 4.35 -2.39 -0.01 0.16 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.45 7.44 -2.38 -0.02 1.43 16 38 H 0.10 3.39 7.47 -2.39 -0.02 3.37 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.04 2.01 7.20 -2.39 -0.02 2.00 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.83 7.04 -2.39 -0.02 1.82 16 48 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 49 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 50 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 51 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -80.73 403.99 3.01 -77.72 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.91 Total: 15.63 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 7.84 Total: 5.04 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.22 Total: -115.85 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.54 Total: -30.11 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -80.73 3.01 -77.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093529075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.130 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds