Wall clock time and date at job start Wed Apr 1 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46653 * 2 1 4 4 O 1.42899 * 109.47320 * 240.00640 * 2 1 3 5 5 C 1.35679 * 117.00271 * 89.99123 * 4 2 1 6 6 C 1.38922 * 119.68197 * 180.02562 * 5 4 2 7 7 C 1.38377 * 119.10531 * 179.97438 * 6 5 4 8 8 C 1.38821 * 118.49090 * 0.02562 * 7 6 5 9 9 C 1.38049 * 119.29016 * 359.97438 * 8 7 6 10 10 N 1.31968 * 120.83110 * 359.74460 * 9 8 7 11 11 C 1.50689 * 109.47204 * 120.00082 * 2 1 3 12 12 O 1.21287 * 120.00177 * 120.00503 * 11 2 1 13 13 N 1.34772 * 120.00367 * 300.00106 * 11 2 1 14 14 C 1.46501 * 120.00156 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47074 * 176.26094 * 14 13 11 16 16 N 1.46503 * 109.46961 * 54.66776 * 15 14 13 17 17 C 1.36933 * 120.00094 * 63.15764 * 16 15 14 18 18 H 1.07999 * 119.99818 * 353.79049 * 17 16 15 19 19 C 1.38811 * 120.00161 * 173.52168 * 17 16 15 20 20 N 1.31619 * 120.00149 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47248 * 89.99717 * 21 19 17 23 23 H 1.48501 * 109.47114 * 209.99797 * 21 19 17 24 24 H 1.48503 * 109.47103 * 330.00013 * 21 19 17 25 25 C 1.52994 * 109.47245 * 174.66793 * 15 14 13 26 26 C 1.53001 * 109.47449 * 180.02562 * 25 15 14 27 27 C 1.53001 * 109.46919 * 299.99718 * 26 25 15 28 28 C 1.53010 * 109.46954 * 60.00064 * 27 26 25 29 29 C 1.52994 * 109.46842 * 299.99972 * 28 27 26 30 30 H 1.09006 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47070 * 299.99528 * 1 2 3 32 32 H 1.09003 * 109.47216 * 59.99999 * 1 2 3 33 33 H 1.07996 * 120.44665 * 359.96218 * 6 5 4 34 34 H 1.08003 * 120.75279 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.36098 * 180.02562 * 8 7 6 36 36 H 1.07997 * 119.58559 * 179.97438 * 9 8 7 37 37 H 0.96999 * 119.99947 * 0.02562 * 13 11 2 38 38 H 1.09002 * 109.46923 * 56.26533 * 14 13 11 39 39 H 1.09000 * 109.47154 * 296.25995 * 14 13 11 40 40 H 0.97005 * 120.00154 * 243.14847 * 16 15 14 41 41 H 0.96997 * 119.99887 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.47442 * 299.99705 * 25 15 14 43 43 H 1.09000 * 109.47378 * 60.00154 * 25 15 14 44 44 H 1.08995 * 109.47428 * 180.02562 * 26 25 15 45 45 H 1.08998 * 109.47450 * 59.99790 * 26 25 15 46 46 H 1.08998 * 109.47119 * 300.00274 * 27 26 25 47 47 H 1.09000 * 109.47476 * 179.97438 * 27 26 25 48 48 H 1.08997 * 109.47016 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.47036 * 60.00160 * 28 27 26 50 50 H 1.09007 * 109.47609 * 300.00083 * 29 28 27 51 51 H 1.09007 * 109.47137 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.2116 0.0831 -2.2742 6 6 2.6737 -0.5148 -3.4400 7 6 2.8783 0.2681 -4.5625 8 6 2.6127 1.6281 -4.4788 9 6 2.1553 2.1548 -3.2875 10 7 1.9645 1.3817 -2.2351 11 6 2.0323 -0.7104 1.2304 12 8 2.7297 -1.6964 1.1191 13 7 1.7068 -0.2500 2.4545 14 6 2.1947 -0.9410 3.6506 15 6 1.7631 -0.1675 4.8981 16 7 0.3105 0.0219 4.8770 17 6 -0.5223 -1.0641 4.9229 18 1 -0.1119 -2.0618 4.8735 19 6 -1.8937 -0.8827 5.0387 20 7 -2.6942 -1.9266 5.0823 21 14 -2.6029 0.8428 5.1325 22 1 -2.9047 1.3292 3.7622 23 1 -3.8513 0.8219 5.9365 24 1 -1.6166 1.7493 5.7734 25 6 2.1564 -0.9562 6.1487 26 6 1.7243 -0.1831 7.3963 27 6 2.4159 1.1816 7.4155 28 6 2.0225 1.9704 6.1649 29 6 2.4546 1.1972 4.9174 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.8707 -1.5762 -3.4696 34 1 3.2365 -0.1690 -5.4828 35 1 2.7614 2.2671 -5.3366 36 1 1.9476 3.2123 -3.2169 37 1 1.1488 0.5384 2.5435 38 1 3.2826 -0.9997 3.6179 39 1 1.7773 -1.9473 3.6845 40 1 -0.0614 0.9166 4.8306 41 1 -3.6524 -1.7998 5.1636 42 1 1.6634 -1.9283 6.1353 43 1 3.2371 -1.0971 6.1645 44 1 2.0049 -0.7447 8.2872 45 1 0.6435 -0.0425 7.3804 46 1 3.4966 1.0410 7.4314 47 1 2.1077 1.7327 8.3041 48 1 2.5155 2.9424 6.1784 49 1 0.9417 2.1110 6.1490 50 1 3.5354 1.0565 4.9333 51 1 2.1748 1.7593 4.0264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120016325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:51 Heat of formation + Delta-G solvation = -32.459378 kcal Electronic energy + Delta-G solvation = -31636.522399 eV Core-core repulsion = 27536.268075 eV Total energy + Delta-G solvation = -4100.254324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86596 -39.71585 -38.77184 -37.54261 -34.54678 -33.40823 -32.70632 -32.22642 -31.16954 -30.36129 -30.10863 -29.07877 -25.76367 -24.58419 -23.70553 -23.49680 -22.83049 -22.15282 -20.59488 -19.92898 -18.62249 -18.37019 -17.79828 -17.47816 -16.47422 -16.08455 -15.74158 -15.50147 -15.04284 -14.92078 -14.63108 -14.43822 -14.22547 -13.81520 -13.63668 -13.53334 -13.40510 -13.20664 -13.07872 -12.63168 -12.28992 -12.25143 -12.16207 -12.08950 -11.96580 -11.73311 -11.66762 -11.27592 -11.08750 -11.00941 -10.85414 -10.62898 -10.30780 -10.16517 -10.07440 -9.89824 -9.79218 -9.67390 -9.44136 -9.35953 -8.92453 -8.65670 -8.52307 -7.33983 -5.80011 -3.17469 0.95380 1.06422 2.62592 2.95690 3.30242 3.32566 3.41031 3.58256 3.76959 4.10066 4.53412 4.61874 4.80755 4.88134 4.94593 4.99324 5.00767 5.06630 5.12182 5.14675 5.17371 5.32246 5.49884 5.50867 5.60923 5.68125 5.70445 5.74141 5.81661 5.85618 5.91001 5.96885 5.99970 6.05085 6.10886 6.16564 6.21881 6.25896 6.32370 6.43637 6.49051 6.59435 6.69111 6.71197 6.90712 6.97284 7.07664 7.14180 7.65460 7.91003 7.96399 8.38278 8.57315 9.15243 9.86792 10.06029 11.37936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002966 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.402875 B = 9439.244426 C =10269.063723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.274 6.274 5 C 0.328 3.672 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.219 4.219 9 C 0.140 3.860 10 N -0.542 5.542 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.696 5.696 14 C 0.118 3.882 15 C 0.198 3.802 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.874 3.126 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.275 1.275 25 C -0.114 4.114 26 C -0.109 4.109 27 C -0.114 4.114 28 C -0.117 4.117 29 C -0.118 4.118 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.400 0.600 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.735 10.398 -12.358 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 H 0.128 0.872 4 O -0.180 6.180 5 C 0.149 3.851 6 C -0.211 4.211 7 C -0.067 4.067 8 C -0.239 4.239 9 C -0.016 4.016 10 N -0.266 5.266 11 C 0.296 3.704 12 O -0.412 6.412 13 N -0.347 5.347 14 C -0.008 4.008 15 C 0.106 3.894 16 N -0.379 5.379 17 C -0.365 4.365 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.578 5.578 21 Si 0.705 3.295 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.201 1.201 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.154 4.154 29 C -0.156 4.156 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.176 0.824 37 H 0.236 0.764 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.848 9.504 -11.547 19.080 hybrid contribution -0.860 1.360 -0.615 1.723 sum 10.988 10.864 -12.163 19.665 Atomic orbital electron populations 1.22166 0.92058 1.04190 1.03706 1.22127 0.95989 0.97669 0.82732 0.87215 1.86397 1.79507 1.34425 1.17651 1.19959 0.90561 0.87355 0.87237 1.21115 1.06278 1.02299 0.91417 1.21404 0.94202 0.93444 0.97604 1.21954 1.05817 0.96226 0.99939 1.22425 0.92552 0.99184 0.87411 1.67295 1.21801 1.04851 1.32687 1.20049 0.81009 0.84951 0.84359 1.90698 1.38076 1.25773 1.86656 1.45605 1.52529 1.31943 1.04647 1.21890 0.97226 0.97425 0.84237 1.19779 0.85074 0.92604 0.91920 1.42820 0.99923 1.05515 1.89667 1.18924 0.87534 0.87743 1.42316 0.89093 1.24649 0.96053 0.95973 1.01975 1.69690 1.03233 1.27862 1.56975 0.86724 0.78946 0.86137 0.77692 1.21283 1.21980 1.20122 1.21763 0.98732 1.00054 0.94829 1.21370 1.02166 0.94491 0.96680 1.21500 0.99607 0.96942 0.97135 1.21495 1.01686 0.97467 0.94782 1.21752 0.99948 0.96194 0.97701 0.90892 0.89839 0.91277 0.83937 0.84229 0.84683 0.82439 0.76405 0.92525 0.91091 0.80574 0.93125 0.91063 0.93413 0.93362 0.90226 0.92883 0.92967 0.93007 0.91510 0.91705 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.43 37.16 0.35 -2.02 16 2 C 0.07 1.14 2.91 -27.89 -0.08 1.06 16 3 H 0.11 1.52 6.99 -51.93 -0.36 1.16 16 4 O -0.27 -4.45 9.29 -38.65 -0.36 -4.81 16 5 C 0.33 4.50 7.45 -17.12 -0.13 4.37 16 6 C -0.19 -2.11 10.04 -39.28 -0.39 -2.51 16 7 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 8 C -0.22 -1.70 10.11 -39.43 -0.40 -2.09 16 9 C 0.14 1.30 11.18 -17.56 -0.20 1.11 16 10 N -0.54 -6.79 8.65 -13.33 -0.12 -6.91 16 11 C 0.51 9.20 7.23 -10.99 -0.08 9.12 16 12 O -0.54 -11.57 16.50 -14.36 -0.24 -11.81 16 13 N -0.70 -11.65 4.98 -60.29 -0.30 -11.95 16 14 C 0.12 2.08 4.37 -4.04 -0.02 2.06 16 15 C 0.20 3.31 0.41 -131.82 -0.05 3.26 16 16 N -0.74 -14.76 3.18 -47.23 -0.15 -14.91 16 17 C -0.24 -5.89 9.18 -15.06 -0.14 -6.03 16 18 H 0.09 2.54 7.01 -52.49 -0.37 2.17 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -27.89 13.97 55.49 0.78 -27.11 16 21 Si 0.87 20.52 27.67 -169.99 -4.70 15.81 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -5.99 6.62 56.52 0.37 -5.62 16 25 C -0.11 -1.90 4.51 -26.73 -0.12 -2.02 16 26 C -0.11 -1.76 5.77 -26.73 -0.15 -1.91 16 27 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 28 C -0.12 -1.61 5.75 -26.73 -0.15 -1.76 16 29 C -0.12 -1.65 4.65 -26.73 -0.12 -1.77 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.18 7.56 -51.93 -0.39 0.79 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.40 6.19 6.81 -40.82 -0.28 5.91 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.47 7.51 -51.93 -0.39 1.08 16 40 H 0.36 7.19 4.58 -40.82 -0.19 7.00 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.36 7.23 -51.93 -0.38 0.98 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.53 7.60 -51.93 -0.39 1.13 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.07 1.05 6.93 -51.93 -0.36 0.69 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.06 0.76 7.29 -51.92 -0.38 0.38 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -32.25 402.98 -9.51 -41.76 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -8.15 Total: 15.29 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.34 Total: -1.44 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.21 Total: -60.87 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.60 Total: -16.62 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.70 Total: 15.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.25 -9.51 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120016325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.298 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds