Wall clock time and date at job start Wed Apr 1 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46653 * 2 1 4 4 O 1.42899 * 109.47320 * 240.00640 * 2 1 3 5 5 C 1.35679 * 117.00271 * 89.99123 * 4 2 1 6 6 C 1.38922 * 119.68197 * 180.02562 * 5 4 2 7 7 C 1.38377 * 119.10531 * 179.97438 * 6 5 4 8 8 C 1.38821 * 118.49090 * 0.02562 * 7 6 5 9 9 C 1.38049 * 119.29016 * 359.97438 * 8 7 6 10 10 N 1.31968 * 120.83110 * 359.74460 * 9 8 7 11 11 C 1.50689 * 109.47204 * 120.00082 * 2 1 3 12 12 O 1.21287 * 120.00177 * 120.00503 * 11 2 1 13 13 N 1.34772 * 120.00367 * 300.00106 * 11 2 1 14 14 C 1.46501 * 120.00156 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47074 * 176.26094 * 14 13 11 16 16 N 1.46503 * 109.46961 * 54.66776 * 15 14 13 17 17 C 1.36933 * 120.00094 * 63.15764 * 16 15 14 18 18 H 1.07999 * 119.99818 * 353.79049 * 17 16 15 19 19 C 1.38811 * 120.00161 * 173.52168 * 17 16 15 20 20 N 1.31619 * 120.00149 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47248 * 89.99717 * 21 19 17 23 23 H 1.48501 * 109.47114 * 209.99797 * 21 19 17 24 24 H 1.48503 * 109.47103 * 330.00013 * 21 19 17 25 25 C 1.52994 * 109.47245 * 174.66793 * 15 14 13 26 26 C 1.53001 * 109.47449 * 180.02562 * 25 15 14 27 27 C 1.53001 * 109.46919 * 299.99718 * 26 25 15 28 28 C 1.53010 * 109.46954 * 60.00064 * 27 26 25 29 29 C 1.52994 * 109.46842 * 299.99972 * 28 27 26 30 30 H 1.09006 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47070 * 299.99528 * 1 2 3 32 32 H 1.09003 * 109.47216 * 59.99999 * 1 2 3 33 33 H 1.07996 * 120.44665 * 359.96218 * 6 5 4 34 34 H 1.08003 * 120.75279 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.36098 * 180.02562 * 8 7 6 36 36 H 1.07997 * 119.58559 * 179.97438 * 9 8 7 37 37 H 0.96999 * 119.99947 * 0.02562 * 13 11 2 38 38 H 1.09002 * 109.46923 * 56.26533 * 14 13 11 39 39 H 1.09000 * 109.47154 * 296.25995 * 14 13 11 40 40 H 0.97005 * 120.00154 * 243.14847 * 16 15 14 41 41 H 0.96997 * 119.99887 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.47442 * 299.99705 * 25 15 14 43 43 H 1.09000 * 109.47378 * 60.00154 * 25 15 14 44 44 H 1.08995 * 109.47428 * 180.02562 * 26 25 15 45 45 H 1.08998 * 109.47450 * 59.99790 * 26 25 15 46 46 H 1.08998 * 109.47119 * 300.00274 * 27 26 25 47 47 H 1.09000 * 109.47476 * 179.97438 * 27 26 25 48 48 H 1.08997 * 109.47016 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.47036 * 60.00160 * 28 27 26 50 50 H 1.09007 * 109.47609 * 300.00083 * 29 28 27 51 51 H 1.09007 * 109.47137 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.2116 0.0831 -2.2742 6 6 2.6737 -0.5148 -3.4400 7 6 2.8783 0.2681 -4.5625 8 6 2.6127 1.6281 -4.4788 9 6 2.1553 2.1548 -3.2875 10 7 1.9645 1.3817 -2.2351 11 6 2.0323 -0.7104 1.2304 12 8 2.7297 -1.6964 1.1191 13 7 1.7068 -0.2500 2.4545 14 6 2.1947 -0.9410 3.6506 15 6 1.7631 -0.1675 4.8981 16 7 0.3105 0.0219 4.8770 17 6 -0.5223 -1.0641 4.9229 18 1 -0.1119 -2.0618 4.8735 19 6 -1.8937 -0.8827 5.0387 20 7 -2.6942 -1.9266 5.0823 21 14 -2.6029 0.8428 5.1325 22 1 -2.9047 1.3292 3.7622 23 1 -3.8513 0.8219 5.9365 24 1 -1.6166 1.7493 5.7734 25 6 2.1564 -0.9562 6.1487 26 6 1.7243 -0.1831 7.3963 27 6 2.4159 1.1816 7.4155 28 6 2.0225 1.9704 6.1649 29 6 2.4546 1.1972 4.9174 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.8707 -1.5762 -3.4696 34 1 3.2365 -0.1690 -5.4828 35 1 2.7614 2.2671 -5.3366 36 1 1.9476 3.2123 -3.2169 37 1 1.1488 0.5384 2.5435 38 1 3.2826 -0.9997 3.6179 39 1 1.7773 -1.9473 3.6845 40 1 -0.0614 0.9166 4.8306 41 1 -3.6524 -1.7998 5.1636 42 1 1.6634 -1.9283 6.1353 43 1 3.2371 -1.0971 6.1645 44 1 2.0049 -0.7447 8.2872 45 1 0.6435 -0.0425 7.3804 46 1 3.4966 1.0410 7.4314 47 1 2.1077 1.7327 8.3041 48 1 2.5155 2.9424 6.1784 49 1 0.9417 2.1110 6.1490 50 1 3.5354 1.0565 4.9333 51 1 2.1748 1.7593 4.0264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120016325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:50 Heat of formation + Delta-G solvation = -53.871785 kcal Electronic energy + Delta-G solvation = -31637.450911 eV Core-core repulsion = 27536.268075 eV Total energy + Delta-G solvation = -4101.182836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84487 -41.01734 -40.05271 -38.68026 -35.98687 -35.16879 -33.66043 -33.38353 -32.73042 -31.59992 -31.09729 -30.58269 -27.10702 -25.66238 -25.40416 -24.50191 -23.83309 -23.37334 -21.84652 -21.33230 -19.81524 -19.70731 -19.58191 -18.70645 -17.48339 -16.99107 -16.88135 -16.73866 -16.46756 -16.26032 -16.14467 -15.53387 -15.46021 -15.15734 -14.96712 -14.89238 -14.52980 -14.32092 -14.18214 -14.00087 -13.90688 -13.61324 -13.43306 -13.31926 -12.98247 -12.93174 -12.81967 -12.77785 -12.67251 -12.38459 -12.22108 -12.09627 -11.89567 -11.67690 -11.32801 -11.16538 -10.98025 -10.88791 -10.75335 -10.71328 -10.57494 -10.03248 -9.49456 -9.24587 -7.92158 -5.25964 0.20905 0.33316 1.40390 1.41160 1.44220 1.51654 1.60886 2.52498 2.54830 2.83649 3.27643 3.37714 3.51910 3.62860 3.83137 3.86843 3.92208 3.94992 4.05311 4.06164 4.12193 4.23571 4.34284 4.36750 4.43396 4.59736 4.62084 4.62616 4.70161 4.71118 4.76999 4.81536 4.86932 4.93408 5.02144 5.03260 5.08107 5.15999 5.22102 5.29351 5.37326 5.42427 5.47237 5.50314 5.54823 5.61680 5.73807 5.90949 6.18354 6.30713 6.51362 6.86955 7.15288 7.17889 7.90437 8.11825 9.29795 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002966 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.402875 B = 9439.244426 C =10269.063723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.086 3.914 3 H 0.128 0.872 4 O -0.304 6.304 5 C 0.291 3.709 6 C -0.207 4.207 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.127 3.873 10 N -0.561 5.561 11 C 0.508 3.492 12 O -0.578 6.578 13 N -0.687 5.687 14 C 0.124 3.876 15 C 0.196 3.804 16 N -0.730 5.730 17 C -0.197 4.197 18 H 0.049 0.951 19 C -0.063 4.063 20 N -0.989 5.989 21 Si 0.942 3.058 22 H -0.278 1.278 23 H -0.311 1.311 24 H -0.244 1.244 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.109 4.109 28 C -0.115 4.115 29 C -0.113 4.113 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.188 0.812 37 H 0.409 0.591 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.367 0.633 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.087 0.913 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.898 14.789 -13.904 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.145 0.855 4 O -0.211 6.211 5 C 0.113 3.887 6 C -0.227 4.227 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.029 4.029 10 N -0.285 5.285 11 C 0.294 3.706 12 O -0.458 6.458 13 N -0.338 5.338 14 C -0.002 4.002 15 C 0.106 3.894 16 N -0.373 5.373 17 C -0.329 4.329 18 H 0.067 0.933 19 C -0.254 4.254 20 N -0.640 5.640 21 Si 0.771 3.229 22 H -0.204 1.204 23 H -0.239 1.239 24 H -0.168 1.168 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.153 4.153 29 C -0.150 4.150 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.192 0.808 35 H 0.191 0.809 36 H 0.205 0.795 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.202 0.798 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.065 13.963 -13.102 23.758 hybrid contribution -1.391 -0.066 -0.257 1.416 sum 12.674 13.897 -13.359 23.070 Atomic orbital electron populations 1.22099 0.91719 1.02915 1.04563 1.21973 0.95944 0.97766 0.81669 0.85470 1.86349 1.80429 1.35825 1.18478 1.20228 0.93134 0.88201 0.87126 1.21350 1.06788 1.02831 0.91777 1.21858 0.92891 0.93674 0.97678 1.22418 1.03128 0.96320 1.00408 1.23068 0.92213 1.00285 0.87294 1.67228 1.22411 1.04502 1.34363 1.20649 0.80168 0.84423 0.85380 1.90666 1.40103 1.27715 1.87316 1.45550 1.52211 1.31840 1.04240 1.21772 0.97813 0.95577 0.85079 1.19989 0.83203 0.94945 0.91231 1.42711 1.01098 1.04264 1.89265 1.18703 0.87857 0.87555 1.38758 0.93277 1.25385 0.96600 1.00034 1.03358 1.69901 1.03105 1.30697 1.60337 0.85605 0.77808 0.81648 0.77868 1.20390 1.23885 1.16780 1.21748 1.00042 0.98240 0.95317 1.21324 1.00163 0.96594 0.96466 1.21480 1.00534 0.94882 0.97764 1.21504 1.00712 0.98828 0.94252 1.21748 1.00812 0.93699 0.98775 0.93193 0.89399 0.89852 0.84098 0.80826 0.80913 0.79529 0.75375 0.91069 0.95381 0.79816 0.93942 0.94956 0.90684 0.92572 0.93878 0.90674 0.91836 0.89941 0.93530 0.89409 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.43 71.98 0.68 -3.89 16 2 C 0.09 2.68 2.91 29.84 0.09 2.76 16 3 H 0.13 3.43 6.99 -2.38 -0.02 3.42 16 4 O -0.30 -10.20 9.29 -70.94 -0.66 -10.86 16 5 C 0.29 7.95 7.45 84.79 0.63 8.59 16 6 C -0.21 -4.47 10.04 22.47 0.23 -4.25 16 7 C -0.04 -0.49 10.17 22.44 0.23 -0.26 16 8 C -0.20 -2.35 10.11 22.36 0.23 -2.12 16 9 C 0.13 1.98 11.18 84.63 0.95 2.93 16 10 N -0.56 -13.28 8.65 -308.95 -2.67 -15.96 16 11 C 0.51 18.76 7.23 87.65 0.63 19.39 16 12 O -0.58 -26.15 16.50 15.99 0.26 -25.88 16 13 N -0.69 -23.12 4.98 -463.06 -2.31 -25.43 16 14 C 0.12 4.43 4.37 86.38 0.38 4.81 16 15 C 0.20 6.45 0.41 3.60 0.00 6.45 16 16 N -0.73 -29.24 3.18 -303.35 -0.97 -30.21 16 17 C -0.20 -10.32 9.18 84.03 0.77 -9.55 16 18 H 0.05 2.97 7.01 -2.91 -0.02 2.95 16 19 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 20 N -0.99 -62.57 13.97 21.65 0.30 -62.27 16 21 Si 0.94 42.97 27.67 68.60 1.90 44.87 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 24 H -0.24 -9.71 6.62 99.48 0.66 -9.05 16 25 C -0.11 -3.78 4.51 30.59 0.14 -3.65 16 26 C -0.11 -3.36 5.77 30.59 0.18 -3.18 16 27 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 28 C -0.12 -2.71 5.75 30.60 0.18 -2.53 16 29 C -0.11 -2.75 4.65 30.59 0.14 -2.60 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.09 2.45 7.56 -2.39 -0.02 2.43 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.41 12.26 6.81 -92.71 -0.63 11.63 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.03 1.24 7.51 -2.39 -0.02 1.22 16 40 H 0.37 14.02 4.58 -92.70 -0.42 13.60 16 41 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.03 1.30 7.23 -2.38 -0.02 1.28 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 46 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.05 1.29 6.93 -2.39 -0.02 1.28 16 50 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 51 H 0.07 1.58 7.29 -2.38 -0.02 1.56 16 Total: -1.00 -77.13 402.98 1.78 -75.34 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.17 Total: 42.98 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.09 Total: 7.41 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -5.64 Total: -133.86 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.40 Total: -36.75 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -77.13 1.78 -75.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120016325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.472 kcal (2) G-P(sol) polarization free energy of solvation -77.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds