Wall clock time and date at job start Wed Apr 1 2020 04:55:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09008 * 109.47087 * 2 1
4 4 O 1.42896 * 109.47552 * 120.00250 * 2 1 3
5 5 C 1.35672 * 117.00065 * 270.00401 * 4 2 1
6 6 C 1.38925 * 119.68362 * 179.72336 * 5 4 2
7 7 C 1.38379 * 119.10893 * 179.75304 * 6 5 4
8 8 C 1.38829 * 118.48625 * 0.50983 * 7 6 5
9 9 C 1.38046 * 119.28837 * 359.72767 * 8 7 6
10 10 N 1.31964 * 120.83758 * 0.02724 * 9 8 7
11 11 C 1.50704 * 109.46993 * 240.00732 * 2 1 3
12 12 O 1.21283 * 119.99514 * 244.99369 * 11 2 1
13 13 N 1.34774 * 120.00494 * 65.00067 * 11 2 1
14 14 C 1.46499 * 120.00281 * 180.02562 * 13 11 2
15 15 C 1.53006 * 109.47043 * 176.20478 * 14 13 11
16 16 N 1.46493 * 109.47032 * 54.66874 * 15 14 13
17 17 C 1.36942 * 119.99811 * 63.04429 * 16 15 14
18 18 H 1.07998 * 120.00157 * 354.10628 * 17 16 15
19 19 C 1.38809 * 119.99871 * 174.11191 * 17 16 15
20 20 N 1.31622 * 120.00251 * 179.97438 * 19 17 16
21 21 Si 1.86801 * 120.00126 * 359.97438 * 19 17 16
22 22 H 1.48503 * 109.46963 * 90.00194 * 21 19 17
23 23 H 1.48501 * 109.47485 * 210.00327 * 21 19 17
24 24 H 1.48501 * 109.47041 * 330.00299 * 21 19 17
25 25 C 1.53000 * 109.46936 * 174.67423 * 15 14 13
26 26 C 1.52992 * 109.47056 * 180.02562 * 25 15 14
27 27 C 1.52998 * 109.47095 * 299.99333 * 26 25 15
28 28 C 1.53001 * 109.46925 * 60.00172 * 27 26 25
29 29 C 1.53001 * 109.47291 * 299.99891 * 28 27 26
30 30 H 1.08995 * 109.47310 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47140 * 299.99467 * 1 2 3
32 32 H 1.09007 * 109.47232 * 59.99693 * 1 2 3
33 33 H 1.07996 * 120.44296 * 0.02562 * 6 5 4
34 34 H 1.08002 * 120.75827 * 180.24403 * 7 6 5
35 35 H 1.07995 * 120.35583 * 179.71231 * 8 7 6
36 36 H 1.07999 * 119.57852 * 179.97438 * 9 8 7
37 37 H 0.97006 * 119.99485 * 359.97438 * 13 11 2
38 38 H 1.08999 * 109.47307 * 56.20283 * 14 13 11
39 39 H 1.08995 * 109.47040 * 296.20282 * 14 13 11
40 40 H 0.97003 * 120.00257 * 243.30983 * 16 15 14
41 41 H 0.96998 * 120.00444 * 179.97438 * 20 19 17
42 42 H 1.09003 * 109.46558 * 299.99931 * 25 15 14
43 43 H 1.08998 * 109.47487 * 59.99024 * 25 15 14
44 44 H 1.09001 * 109.47081 * 179.97438 * 26 25 15
45 45 H 1.09001 * 109.47554 * 59.99890 * 26 25 15
46 46 H 1.09001 * 109.47374 * 300.00667 * 27 26 25
47 47 H 1.08994 * 109.47628 * 180.02562 * 27 26 25
48 48 H 1.09002 * 109.47321 * 180.02562 * 28 27 26
49 49 H 1.09008 * 109.47343 * 60.00116 * 28 27 26
50 50 H 1.08994 * 109.46997 * 300.00272 * 29 28 27
51 51 H 1.09001 * 109.47278 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6737 1.1667
5 6 2.2117 0.0828 2.2741
6 6 2.6688 -0.5160 3.4413
7 6 2.8791 0.2676 4.5622
8 6 2.6130 1.6276 4.4788
9 6 2.1557 2.1544 3.2875
10 7 1.9695 1.3823 2.2337
11 6 2.0323 -0.7103 -1.2306
12 8 2.6530 -1.7465 -1.1217
13 7 1.7919 -0.1940 -2.4521
14 6 2.2797 -0.8848 -3.6483
15 6 1.7947 -0.1459 -4.8973
16 7 2.1996 1.2599 -4.8211
17 6 3.5286 1.5895 -4.8009
18 1 4.2768 0.8127 -4.7449
19 6 3.9140 2.9220 -4.8521
20 7 5.1913 3.2390 -4.8321
21 14 2.6198 4.2656 -4.9495
22 1 2.2390 4.6864 -3.5772
23 1 3.1695 5.4298 -5.6896
24 1 1.4221 3.7487 -5.6590
25 6 2.4120 -0.7879 -6.1415
26 6 1.9275 -0.0487 -7.3903
27 6 0.4024 -0.1358 -7.4750
28 6 -0.2149 0.5060 -6.2309
29 6 0.2695 -0.2331 -4.9819
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5137 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 2.8618 -1.5782 3.4720
34 1 3.2378 -0.1695 5.4824
35 1 2.7620 2.2665 5.3366
36 1 1.9469 3.2117 3.2175
37 1 1.2952 0.6347 -2.5391
38 1 1.8985 -1.9058 -3.6592
39 1 3.3695 -0.9039 -3.6378
40 1 1.5263 1.9570 -4.7811
41 1 5.4607 4.1701 -4.8683
42 1 3.4986 -0.7254 -6.0813
43 1 2.1108 -1.8339 -6.1980
44 1 2.3676 -0.5058 -8.2766
45 1 2.2292 0.9972 -7.3335
46 1 0.1008 -1.1817 -7.5318
47 1 0.0572 0.3903 -8.3650
48 1 -1.3015 0.4436 -6.2910
49 1 0.0866 1.5520 -6.1740
50 1 -0.0321 -1.2790 -5.0389
51 1 -0.1699 0.2244 -4.0956
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001120016326.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:55
Heat of formation + Delta-G solvation = -32.457171 kcal
Electronic energy + Delta-G solvation = -31660.979442 eV
Core-core repulsion = 27560.725213 eV
Total energy + Delta-G solvation = -4100.254229 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.82689 -39.70571 -38.76376 -37.52386 -34.54148 -33.40388 -32.65507 -32.24591
-31.17470 -30.36071 -30.09439 -29.10129 -25.80997 -24.58918 -23.65866 -23.49434
-22.80790 -22.13811 -20.59318 -19.94449 -18.59398 -18.35127 -17.79271 -17.46703
-16.44917 -16.05702 -15.76461 -15.50392 -15.08209 -14.65270 -14.62453 -14.51549
-14.34488 -13.84277 -13.60261 -13.51197 -13.36102 -13.22915 -13.10167 -12.63339
-12.42260 -12.24795 -12.13936 -12.12196 -11.96338 -11.79440 -11.66988 -11.28381
-11.11351 -11.00239 -10.85164 -10.62806 -10.30267 -10.10754 -10.07251 -9.89690
-9.72998 -9.67074 -9.43992 -9.35961 -8.92005 -8.61764 -8.52013 -7.33512
-5.79437 -3.16941 1.01225 1.12146 2.65416 2.93809 3.31439 3.32946
3.41519 3.64698 3.77643 4.15455 4.54172 4.67702 4.83637 4.89604
4.93448 4.98596 5.00579 5.06328 5.12598 5.14097 5.19598 5.32585
5.50710 5.52431 5.56670 5.60839 5.64465 5.70726 5.80139 5.85496
5.90895 5.97743 6.00161 6.02009 6.05125 6.10744 6.16802 6.27750
6.32175 6.43646 6.49143 6.59426 6.69147 6.71287 6.90946 6.97551
7.08004 7.16128 7.71797 7.91311 7.96739 8.38826 8.57524 9.15763
9.87369 10.06317 11.38541
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011782 B = 0.003169 C = 0.002784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2375.855283 B = 8833.378688 C =10054.096081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.071 3.929
3 H 0.115 0.885
4 O -0.275 6.275
5 C 0.327 3.673
6 C -0.191 4.191
7 C -0.041 4.041
8 C -0.218 4.218
9 C 0.142 3.858
10 N -0.540 5.540
11 C 0.513 3.487
12 O -0.535 6.535
13 N -0.696 5.696
14 C 0.118 3.882
15 C 0.198 3.802
16 N -0.736 5.736
17 C -0.237 4.237
18 H 0.091 0.909
19 C 0.010 3.990
20 N -0.930 5.930
21 Si 0.875 3.125
22 H -0.286 1.286
23 H -0.293 1.293
24 H -0.275 1.275
25 C -0.114 4.114
26 C -0.110 4.110
27 C -0.114 4.114
28 C -0.117 4.117
29 C -0.118 4.118
30 H 0.067 0.933
31 H 0.070 0.930
32 H 0.078 0.922
33 H 0.142 0.858
34 H 0.140 0.860
35 H 0.136 0.864
36 H 0.159 0.841
37 H 0.400 0.600
38 H 0.057 0.943
39 H 0.070 0.930
40 H 0.361 0.639
41 H 0.259 0.741
42 H 0.070 0.930
43 H 0.047 0.953
44 H 0.048 0.952
45 H 0.079 0.921
46 H 0.052 0.948
47 H 0.052 0.948
48 H 0.051 0.949
49 H 0.066 0.934
50 H 0.065 0.935
51 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.161 -5.169 11.689 17.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.011 3.989
3 H 0.133 0.867
4 O -0.181 6.181
5 C 0.148 3.852
6 C -0.211 4.211
7 C -0.067 4.067
8 C -0.238 4.238
9 C -0.014 4.014
10 N -0.264 5.264
11 C 0.297 3.703
12 O -0.412 6.412
13 N -0.347 5.347
14 C -0.008 4.008
15 C 0.106 3.894
16 N -0.379 5.379
17 C -0.366 4.366
18 H 0.109 0.891
19 C -0.186 4.186
20 N -0.578 5.578
21 Si 0.706 3.294
22 H -0.213 1.213
23 H -0.220 1.220
24 H -0.201 1.201
25 C -0.154 4.154
26 C -0.147 4.147
27 C -0.152 4.152
28 C -0.154 4.154
29 C -0.156 4.156
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.097 0.903
33 H 0.160 0.840
34 H 0.158 0.842
35 H 0.154 0.846
36 H 0.176 0.824
37 H 0.236 0.764
38 H 0.075 0.925
39 H 0.088 0.912
40 H 0.194 0.806
41 H 0.069 0.931
42 H 0.089 0.911
43 H 0.066 0.934
44 H 0.066 0.934
45 H 0.098 0.902
46 H 0.071 0.929
47 H 0.070 0.930
48 H 0.070 0.930
49 H 0.085 0.915
50 H 0.083 0.917
51 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -11.717 -5.848 10.886 17.029
hybrid contribution -0.650 1.479 0.628 1.733
sum -12.367 -4.369 11.514 17.453
Atomic orbital electron populations
1.22133 0.92678 1.03353 1.03660 1.22128 0.95513 0.98400 0.82864
0.86745 1.86372 1.79661 1.34408 1.17635 1.19945 0.90794 0.87394
0.87110 1.21089 1.06372 1.02224 0.91452 1.21400 0.94194 0.93457
0.97642 1.21963 1.05658 0.96213 0.99985 1.22445 0.92462 0.99239
0.87261 1.67298 1.21841 1.04748 1.32518 1.20027 0.80404 0.85545
0.84313 1.90695 1.40258 1.23673 1.86532 1.45599 1.56808 1.27444
1.04877 1.21893 1.00162 0.94463 0.84285 1.19780 0.91724 0.86012
0.91859 1.42814 1.04986 1.00569 1.89568 1.18926 0.82259 0.92848
1.42593 0.89111 1.24645 0.95294 0.96684 1.02009 1.69691 1.13622
1.17234 1.57235 0.86712 0.81894 0.83126 0.77710 1.21261 1.21955
1.20113 1.21761 1.01619 0.97172 0.94824 1.21368 0.94015 1.02686
0.96643 1.21494 0.96783 0.99763 0.97130 1.21497 0.98593 1.00543
0.94806 1.21750 0.95668 1.00462 0.97683 0.91367 0.91062 0.90326
0.84006 0.84233 0.84642 0.82362 0.76423 0.92465 0.91157 0.80566
0.93125 0.91084 0.93395 0.93362 0.90227 0.92883 0.92966 0.93004
0.91511 0.91669 0.92439
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.91 9.49 37.16 0.35 -1.55 16
2 C 0.07 1.09 2.90 -27.88 -0.08 1.01 16
3 H 0.11 1.81 6.98 -51.92 -0.36 1.44 16
4 O -0.28 -4.49 9.30 -38.58 -0.36 -4.85 16
5 C 0.33 4.69 7.45 -17.12 -0.13 4.57 16
6 C -0.19 -2.22 10.04 -39.28 -0.39 -2.61 16
7 C -0.04 -0.37 10.17 -39.31 -0.40 -0.77 16
8 C -0.22 -1.90 10.11 -39.43 -0.40 -2.29 16
9 C 0.14 1.50 11.18 -17.57 -0.20 1.30 16
10 N -0.54 -7.40 8.65 -13.33 -0.12 -7.52 16
11 C 0.51 9.25 7.18 -10.98 -0.08 9.17 16
12 O -0.53 -11.59 16.51 -14.31 -0.24 -11.83 16
13 N -0.70 -11.71 5.05 -60.29 -0.30 -12.02 16
14 C 0.12 2.08 4.37 -4.04 -0.02 2.06 16
15 C 0.20 3.32 0.41 -131.82 -0.05 3.27 16
16 N -0.74 -14.93 3.18 -47.23 -0.15 -15.08 16
17 C -0.24 -6.00 9.18 -15.06 -0.14 -6.14 16
18 H 0.09 2.57 7.00 -52.49 -0.37 2.20 16
19 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16
20 N -0.93 -28.18 13.97 55.49 0.78 -27.40 16
21 Si 0.88 20.74 27.68 -169.99 -4.70 16.03 16
22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16
23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
24 H -0.28 -6.02 6.61 56.52 0.37 -5.65 16
25 C -0.11 -1.91 4.51 -26.73 -0.12 -2.03 16
26 C -0.11 -1.76 5.76 -26.74 -0.15 -1.92 16
27 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16
28 C -0.12 -1.60 5.75 -26.73 -0.15 -1.76 16
29 C -0.12 -1.63 4.65 -26.73 -0.12 -1.75 16
30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16
33 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16
34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16
35 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16
36 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16
37 H 0.40 6.23 7.18 -40.82 -0.29 5.94 16
38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
39 H 0.07 1.47 7.51 -51.93 -0.39 1.08 16
40 H 0.36 7.26 4.57 -40.82 -0.19 7.07 16
41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
42 H 0.07 1.36 7.23 -51.93 -0.38 0.99 16
43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
45 H 0.08 1.53 7.60 -51.93 -0.39 1.14 16
46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
49 H 0.07 1.05 6.93 -51.92 -0.36 0.69 16
50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
51 H 0.06 0.74 7.29 -51.93 -0.38 0.37 16
LS Contribution 403.77 15.07 6.08 6.08
Total: -1.00 -32.84 403.77 -9.53 -42.36
By element:
Atomic # 1 Polarization: 23.37 SS G_CDS: -8.18 Total: 15.19 kcal
Atomic # 6 Polarization: 1.36 SS G_CDS: -2.34 Total: -0.98 kcal
Atomic # 7 Polarization: -62.22 SS G_CDS: 0.20 Total: -62.01 kcal
Atomic # 8 Polarization: -16.08 SS G_CDS: -0.59 Total: -16.68 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -4.70 Total: 16.03 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -32.84 -9.53 -42.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001120016326.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.907 kcal
(2) G-P(sol) polarization free energy of solvation -32.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.928 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds