Wall clock time and date at job start Wed Apr 1 2020 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46781 * 2 1 4 4 O 1.42892 * 109.47570 * 120.00841 * 2 1 3 5 5 C 1.35921 * 116.99608 * 275.03398 * 4 2 1 6 6 C 1.39138 * 120.47083 * 185.27556 * 5 4 2 7 7 C 1.38533 * 118.37297 * 179.97438 * 6 5 4 8 8 C 1.38259 * 119.22346 * 359.97438 * 7 6 5 9 9 N 1.31847 * 120.88325 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77866 * 359.69367 * 9 8 7 11 11 C 1.50707 * 109.47027 * 240.00827 * 2 1 3 12 12 O 1.21283 * 119.99678 * 250.09198 * 11 2 1 13 13 N 1.34770 * 120.00134 * 70.09276 * 11 2 1 14 14 C 1.46925 * 120.63112 * 6.21320 * 13 11 2 15 15 C 1.53165 * 108.76850 * 233.62866 * 14 13 11 16 16 C 1.53037 * 109.32809 * 305.35442 * 15 14 13 17 17 C 1.53043 * 109.52834 * 61.37361 * 16 15 14 18 18 C 1.46931 * 120.63141 * 186.23501 * 13 11 2 19 19 H 1.09006 * 109.70169 * 246.22906 * 18 13 11 20 20 C 1.52994 * 109.58263 * 6.58104 * 18 13 11 21 21 N 1.46509 * 109.46788 * 178.41991 * 20 18 13 22 22 C 1.46501 * 119.99755 * 273.45718 * 21 20 18 23 23 C 1.36933 * 120.00136 * 93.45795 * 21 20 18 24 24 H 1.08001 * 120.00078 * 34.13401 * 23 21 20 25 25 C 1.38809 * 120.00334 * 214.14047 * 23 21 20 26 26 N 1.31618 * 119.99697 * 5.38362 * 25 23 21 27 27 Si 1.86799 * 120.00419 * 185.38060 * 25 23 21 28 28 H 1.48502 * 109.46827 * 94.99840 * 27 25 23 29 29 H 1.48491 * 109.47432 * 214.99871 * 27 25 23 30 30 H 1.48505 * 109.47045 * 335.00393 * 27 25 23 31 31 H 1.09000 * 109.46854 * 185.03068 * 1 2 3 32 32 H 1.09002 * 109.46890 * 305.03207 * 1 2 3 33 33 H 1.08999 * 109.47541 * 65.03592 * 1 2 3 34 34 H 1.07997 * 120.81713 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.39034 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.55818 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.65796 * 180.29679 * 10 9 8 38 38 H 1.09004 * 109.58777 * 353.41478 * 14 13 11 39 39 H 1.08997 * 109.58891 * 113.69880 * 14 13 11 40 40 H 1.09001 * 109.48440 * 185.40396 * 15 14 13 41 41 H 1.09003 * 109.50160 * 65.31738 * 15 14 13 42 42 H 1.08993 * 109.46173 * 301.35687 * 16 15 14 43 43 H 1.09008 * 109.46051 * 181.38228 * 16 15 14 44 44 H 1.08999 * 109.49871 * 58.59048 * 17 16 15 45 45 H 1.08996 * 109.50226 * 178.65469 * 17 16 15 46 46 H 1.08994 * 109.47767 * 298.41758 * 20 18 13 47 47 H 1.08997 * 109.47398 * 58.42416 * 20 18 13 48 48 H 1.09000 * 109.46900 * 85.54114 * 22 21 20 49 49 H 1.09004 * 109.46736 * 205.53400 * 22 21 20 50 50 H 1.09001 * 109.47205 * 325.53560 * 22 21 20 51 51 H 0.97006 * 120.00348 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1119 0.0623 2.3043 6 6 2.6698 -0.4902 3.4530 7 6 2.7565 0.2992 4.5881 8 6 2.2901 1.6000 4.5429 9 7 1.7667 2.0932 3.4378 10 6 1.6709 1.3770 2.3350 11 6 2.0323 -0.7103 -1.2306 12 8 2.5716 -1.7918 -1.1288 13 7 1.8822 -0.1436 -2.4442 14 6 1.3556 1.2220 -2.5728 15 6 0.1644 1.2022 -3.5354 16 6 0.5940 0.5672 -4.8599 17 6 1.0403 -0.8760 -4.6143 18 6 2.2417 -0.8799 -3.6638 19 1 3.0916 -0.3979 -4.1471 20 6 2.6062 -2.3215 -3.3038 21 7 2.9277 -3.0635 -4.5255 22 6 1.8595 -3.7080 -5.2936 23 6 4.2265 -3.1547 -4.9495 24 1 5.0280 -3.2059 -4.2274 25 6 4.5132 -3.1813 -6.3074 26 7 3.5487 -3.0124 -7.1870 27 14 6.2677 -3.4565 -6.8865 28 1 6.4729 -4.8985 -7.1760 29 1 6.5123 -2.6646 -8.1186 30 1 7.2127 -3.0254 -5.8251 31 1 -0.3633 -1.0237 0.0901 32 1 -0.3633 0.5899 0.8415 33 1 -0.3634 0.4337 -0.9316 34 1 3.0266 -1.5096 3.4595 35 1 3.1842 -0.0965 5.4974 36 1 2.3547 2.2200 5.4247 37 1 1.2405 1.8171 1.4477 38 1 1.0307 1.5818 -1.5965 39 1 2.1332 1.8782 -2.9637 40 1 -0.1754 2.2223 -3.7143 41 1 -0.6467 0.6194 -3.0987 42 1 1.4214 1.1361 -5.2838 43 1 -0.2455 0.5743 -5.5551 44 1 0.2210 -1.4391 -4.1675 45 1 1.3235 -1.3354 -5.5613 46 1 3.4707 -2.3229 -2.6400 47 1 1.7623 -2.7954 -2.8024 48 1 1.4208 -2.9859 -5.9823 49 1 2.2717 -4.5444 -5.8580 50 1 1.0912 -4.0730 -4.6119 51 1 3.7490 -3.0306 -8.1360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158479930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:42 Heat of formation + Delta-G solvation = 10.761606 kcal Electronic energy + Delta-G solvation = -32077.754451 eV Core-core repulsion = 27979.374329 eV Total energy + Delta-G solvation = -4098.380122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.19398 -40.22804 -38.43596 -36.97348 -35.50618 -33.40871 -32.60029 -32.14675 -31.25589 -30.39169 -29.88344 -26.91345 -25.76516 -24.94994 -24.36836 -23.89884 -23.15416 -22.14594 -20.83841 -20.37524 -18.80151 -18.62662 -17.26520 -17.00700 -16.65956 -16.13403 -15.92663 -15.58292 -15.11885 -14.84075 -14.56377 -14.33655 -14.11460 -14.00225 -13.80137 -13.50199 -13.28305 -13.26416 -13.04832 -12.73451 -12.67276 -12.61638 -12.51829 -12.23315 -11.95037 -11.59529 -11.41731 -11.07285 -11.00029 -10.86223 -10.65829 -10.61785 -10.40751 -10.25474 -10.04852 -10.01386 -9.88188 -9.75142 -9.68660 -8.87217 -8.64815 -8.40474 -8.22366 -6.50764 -5.70545 -3.23368 0.80574 1.00835 2.44809 2.70533 3.37304 3.41862 3.46944 3.49665 3.50948 4.12792 4.24312 4.40747 4.50948 4.55378 4.60048 4.65417 4.77107 4.77977 4.94471 5.03166 5.09696 5.19916 5.28174 5.32653 5.42810 5.47871 5.49563 5.55155 5.68100 5.77256 5.78029 5.81323 5.95823 5.98398 6.05277 6.17266 6.20917 6.23673 6.48483 6.54232 6.69747 6.86370 6.91931 6.99316 7.06170 7.38868 7.40628 7.62928 7.64151 7.76089 7.89615 8.36432 8.58492 9.32692 9.93732 10.49679 11.34862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.002858 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.321282 B = 9793.382937 C =10932.251627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 H 0.093 0.907 4 O -0.276 6.276 5 C 0.086 3.914 6 C -0.107 4.107 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.450 5.450 10 C 0.011 3.989 11 C 0.515 3.485 12 O -0.500 6.500 13 N -0.599 5.599 14 C 0.099 3.901 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.127 4.127 18 C 0.127 3.873 19 H 0.074 0.926 20 C 0.160 3.840 21 N -0.596 5.596 22 C 0.157 3.843 23 C -0.253 4.253 24 H 0.062 0.938 25 C 0.009 3.991 26 N -0.905 5.905 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.037 0.963 48 H 0.025 0.975 49 H 0.045 0.955 50 H -0.008 1.008 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 12.154 17.490 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.002 3.998 3 H 0.111 0.889 4 O -0.186 6.186 5 C 0.038 3.962 6 C -0.134 4.134 7 C -0.150 4.150 8 C -0.104 4.104 9 N -0.159 5.159 10 C -0.147 4.147 11 C 0.300 3.700 12 O -0.373 6.373 13 N -0.335 5.335 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.157 4.157 17 C -0.165 4.165 18 C 0.023 3.977 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.320 5.320 22 C 0.012 3.988 23 C -0.383 4.383 24 H 0.080 0.920 25 C -0.189 4.189 26 N -0.549 5.549 27 Si 0.730 3.270 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.121 0.879 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.064 0.936 50 H 0.010 0.990 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.606 12.153 17.291 22.820 hybrid contribution 1.057 -0.537 -0.639 1.347 sum -7.549 11.616 16.652 21.661 Atomic orbital electron populations 1.22415 0.92490 1.04811 1.03921 1.22393 0.95937 0.96894 0.84530 0.88919 1.86267 1.80487 1.36465 1.15418 1.20171 0.96211 0.91883 0.87938 1.21022 0.99902 1.01835 0.90637 1.22039 0.99458 0.94998 0.98518 1.22659 0.97443 0.93904 0.96401 1.67523 1.12294 1.37072 0.99018 1.22956 1.03025 0.90808 0.97946 1.19826 0.80197 0.86382 0.83608 1.90821 1.40937 1.20615 1.84968 1.48389 1.63914 1.15182 1.06029 1.21850 0.96686 0.83920 0.99989 1.21924 0.97359 1.01074 0.96755 1.21536 1.00890 0.97385 0.95907 1.22090 0.97183 0.95263 1.01950 1.22595 0.96377 0.96276 0.82438 0.90822 1.21568 0.99963 0.86850 0.88305 1.44091 1.04170 1.56900 1.26790 1.20883 0.88959 0.96338 0.92634 1.19188 0.83933 1.45033 0.90177 0.91986 1.25272 0.97073 1.00004 0.96597 1.69983 1.30622 1.53724 1.00603 0.86304 0.84955 0.77654 0.78059 1.21523 1.21752 1.20367 0.90275 0.90953 0.89598 0.83705 0.84019 0.82559 0.82495 0.90596 0.91074 0.91174 0.91674 0.91965 0.92162 0.92952 0.87859 0.90480 0.94423 0.95671 0.93584 0.98960 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.82 37.16 0.33 -1.34 16 2 C 0.06 0.74 1.78 -27.88 -0.05 0.69 16 3 H 0.09 0.88 5.27 -51.93 -0.27 0.61 16 4 O -0.28 -3.77 9.37 -39.20 -0.37 -4.14 16 5 C 0.09 1.00 6.62 -39.08 -0.26 0.74 16 6 C -0.11 -1.09 10.13 -39.14 -0.40 -1.48 16 7 C -0.13 -1.04 10.11 -39.46 -0.40 -1.44 16 8 C 0.05 0.47 11.18 -17.54 -0.20 0.27 16 9 N -0.45 -4.88 10.36 -13.13 -0.14 -5.02 16 10 C 0.01 0.11 9.49 -17.38 -0.16 -0.05 16 11 C 0.51 8.24 6.86 -10.99 -0.08 8.17 16 12 O -0.50 -10.24 12.11 -14.15 -0.17 -10.41 16 13 N -0.60 -9.03 2.97 -165.23 -0.49 -9.52 16 14 C 0.10 1.06 5.50 -3.72 -0.02 1.04 16 15 C -0.13 -1.37 5.95 -26.63 -0.16 -1.53 16 16 C -0.12 -1.61 5.88 -26.69 -0.16 -1.77 16 17 C -0.13 -2.23 4.44 -26.61 -0.12 -2.34 16 18 C 0.13 2.42 3.21 -67.60 -0.22 2.20 16 19 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 20 C 0.16 3.64 3.71 -4.04 -0.01 3.63 16 21 N -0.60 -15.42 2.68 -181.12 -0.49 -15.91 16 22 C 0.16 3.89 8.02 59.85 0.48 4.37 16 23 C -0.25 -7.12 9.52 -15.06 -0.14 -7.27 16 24 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 25 C 0.01 0.26 5.17 -17.43 -0.09 0.17 16 26 N -0.91 -25.90 11.10 55.49 0.62 -25.29 16 27 Si 0.90 22.06 29.56 -169.99 -5.02 17.04 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.55 6.91 -51.93 -0.36 0.19 16 33 H 0.09 0.70 5.53 -51.93 -0.29 0.41 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.16 1.34 5.40 -52.49 -0.28 1.06 16 38 H 0.08 0.60 4.74 -51.93 -0.25 0.35 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.66 7.48 -51.93 -0.39 0.27 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.10 2.21 5.51 -51.93 -0.29 1.92 16 46 H 0.08 1.92 6.07 -51.93 -0.32 1.61 16 47 H 0.04 0.87 7.11 -51.93 -0.37 0.50 16 48 H 0.03 0.64 5.54 -51.93 -0.29 0.35 16 49 H 0.05 1.23 7.27 -51.93 -0.38 0.86 16 50 H -0.01 -0.18 7.98 -51.93 -0.41 -0.60 16 51 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -33.07 387.99 -9.53 -42.60 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.66 Total: 0.75 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.65 Total: 4.05 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.50 Total: -55.74 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.54 Total: -14.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.07 -9.53 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158479930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.363 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds