Wall clock time and date at job start Wed Apr 1 2020 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46781 * 2 1 4 4 O 1.42892 * 109.47570 * 120.00841 * 2 1 3 5 5 C 1.35921 * 116.99608 * 275.03398 * 4 2 1 6 6 C 1.39138 * 120.47083 * 185.27556 * 5 4 2 7 7 C 1.38533 * 118.37297 * 179.97438 * 6 5 4 8 8 C 1.38259 * 119.22346 * 359.97438 * 7 6 5 9 9 N 1.31847 * 120.88325 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77866 * 359.69367 * 9 8 7 11 11 C 1.50707 * 109.47027 * 240.00827 * 2 1 3 12 12 O 1.21283 * 119.99678 * 250.09198 * 11 2 1 13 13 N 1.34770 * 120.00134 * 70.09276 * 11 2 1 14 14 C 1.46925 * 120.63112 * 6.21320 * 13 11 2 15 15 C 1.53165 * 108.76850 * 233.62866 * 14 13 11 16 16 C 1.53037 * 109.32809 * 305.35442 * 15 14 13 17 17 C 1.53043 * 109.52834 * 61.37361 * 16 15 14 18 18 C 1.46931 * 120.63141 * 186.23501 * 13 11 2 19 19 H 1.09006 * 109.70169 * 246.22906 * 18 13 11 20 20 C 1.52994 * 109.58263 * 6.58104 * 18 13 11 21 21 N 1.46509 * 109.46788 * 178.41991 * 20 18 13 22 22 C 1.46501 * 119.99755 * 273.45718 * 21 20 18 23 23 C 1.36933 * 120.00136 * 93.45795 * 21 20 18 24 24 H 1.08001 * 120.00078 * 34.13401 * 23 21 20 25 25 C 1.38809 * 120.00334 * 214.14047 * 23 21 20 26 26 N 1.31618 * 119.99697 * 5.38362 * 25 23 21 27 27 Si 1.86799 * 120.00419 * 185.38060 * 25 23 21 28 28 H 1.48502 * 109.46827 * 94.99840 * 27 25 23 29 29 H 1.48491 * 109.47432 * 214.99871 * 27 25 23 30 30 H 1.48505 * 109.47045 * 335.00393 * 27 25 23 31 31 H 1.09000 * 109.46854 * 185.03068 * 1 2 3 32 32 H 1.09002 * 109.46890 * 305.03207 * 1 2 3 33 33 H 1.08999 * 109.47541 * 65.03592 * 1 2 3 34 34 H 1.07997 * 120.81713 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.39034 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.55818 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.65796 * 180.29679 * 10 9 8 38 38 H 1.09004 * 109.58777 * 353.41478 * 14 13 11 39 39 H 1.08997 * 109.58891 * 113.69880 * 14 13 11 40 40 H 1.09001 * 109.48440 * 185.40396 * 15 14 13 41 41 H 1.09003 * 109.50160 * 65.31738 * 15 14 13 42 42 H 1.08993 * 109.46173 * 301.35687 * 16 15 14 43 43 H 1.09008 * 109.46051 * 181.38228 * 16 15 14 44 44 H 1.08999 * 109.49871 * 58.59048 * 17 16 15 45 45 H 1.08996 * 109.50226 * 178.65469 * 17 16 15 46 46 H 1.08994 * 109.47767 * 298.41758 * 20 18 13 47 47 H 1.08997 * 109.47398 * 58.42416 * 20 18 13 48 48 H 1.09000 * 109.46900 * 85.54114 * 22 21 20 49 49 H 1.09004 * 109.46736 * 205.53400 * 22 21 20 50 50 H 1.09001 * 109.47205 * 325.53560 * 22 21 20 51 51 H 0.97006 * 120.00348 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1119 0.0623 2.3043 6 6 2.6698 -0.4902 3.4530 7 6 2.7565 0.2992 4.5881 8 6 2.2901 1.6000 4.5429 9 7 1.7667 2.0932 3.4378 10 6 1.6709 1.3770 2.3350 11 6 2.0323 -0.7103 -1.2306 12 8 2.5716 -1.7918 -1.1288 13 7 1.8822 -0.1436 -2.4442 14 6 1.3556 1.2220 -2.5728 15 6 0.1644 1.2022 -3.5354 16 6 0.5940 0.5672 -4.8599 17 6 1.0403 -0.8760 -4.6143 18 6 2.2417 -0.8799 -3.6638 19 1 3.0916 -0.3979 -4.1471 20 6 2.6062 -2.3215 -3.3038 21 7 2.9277 -3.0635 -4.5255 22 6 1.8595 -3.7080 -5.2936 23 6 4.2265 -3.1547 -4.9495 24 1 5.0280 -3.2059 -4.2274 25 6 4.5132 -3.1813 -6.3074 26 7 3.5487 -3.0124 -7.1870 27 14 6.2677 -3.4565 -6.8865 28 1 6.4729 -4.8985 -7.1760 29 1 6.5123 -2.6646 -8.1186 30 1 7.2127 -3.0254 -5.8251 31 1 -0.3633 -1.0237 0.0901 32 1 -0.3633 0.5899 0.8415 33 1 -0.3634 0.4337 -0.9316 34 1 3.0266 -1.5096 3.4595 35 1 3.1842 -0.0965 5.4974 36 1 2.3547 2.2200 5.4247 37 1 1.2405 1.8171 1.4477 38 1 1.0307 1.5818 -1.5965 39 1 2.1332 1.8782 -2.9637 40 1 -0.1754 2.2223 -3.7143 41 1 -0.6467 0.6194 -3.0987 42 1 1.4214 1.1361 -5.2838 43 1 -0.2455 0.5743 -5.5551 44 1 0.2210 -1.4391 -4.1675 45 1 1.3235 -1.3354 -5.5613 46 1 3.4707 -2.3229 -2.6400 47 1 1.7623 -2.7954 -2.8024 48 1 1.4208 -2.9859 -5.9823 49 1 2.2717 -4.5444 -5.8580 50 1 1.0912 -4.0730 -4.6119 51 1 3.7490 -3.0306 -8.1360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158479930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:41 Heat of formation + Delta-G solvation = -9.451294 kcal Electronic energy + Delta-G solvation = -32078.630948 eV Core-core repulsion = 27979.374329 eV Total energy + Delta-G solvation = -4099.256619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.16621 -41.28578 -39.38128 -38.24962 -37.33370 -34.59385 -33.73430 -33.45981 -32.50107 -31.47979 -31.02943 -28.54316 -27.68877 -26.21089 -25.39562 -24.69943 -24.15844 -23.51502 -22.32689 -21.73617 -19.99267 -19.49583 -18.80284 -18.20219 -17.73029 -17.28503 -17.08886 -16.74423 -16.58389 -16.11838 -15.61465 -15.56698 -15.38373 -15.23862 -15.00766 -14.77402 -14.52264 -14.37682 -14.28342 -14.07017 -13.94543 -13.79901 -13.44644 -13.26888 -13.10454 -12.82631 -12.76286 -12.69132 -12.55738 -12.37879 -12.28565 -12.22714 -11.99955 -11.85320 -11.72882 -11.54169 -11.32726 -10.71161 -10.64756 -10.49024 -10.16606 -9.56974 -9.47849 -8.60938 -7.86212 -5.43304 0.11830 0.26351 1.41729 1.43023 1.45287 1.48419 1.53702 2.34551 2.49951 2.80642 3.22497 3.31390 3.41157 3.66148 3.71429 3.78415 3.80785 3.92892 3.97053 3.98322 4.02628 4.09232 4.16173 4.36287 4.38669 4.46902 4.55550 4.60462 4.61651 4.62696 4.69292 4.81092 4.85404 4.95804 5.01843 5.03522 5.11963 5.14597 5.15258 5.22116 5.23376 5.30985 5.34254 5.50115 5.54734 5.62098 5.67606 5.78400 6.12852 6.36380 6.46314 6.93905 7.10494 7.18994 7.85443 8.36078 9.16723 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.002858 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.321282 B = 9793.382937 C =10932.251627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.122 0.878 4 O -0.306 6.306 5 C 0.062 3.938 6 C -0.124 4.124 7 C -0.121 4.121 8 C 0.052 3.948 9 N -0.470 5.470 10 C 0.008 3.992 11 C 0.505 3.495 12 O -0.557 6.557 13 N -0.596 5.596 14 C 0.090 3.910 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.116 4.116 18 C 0.141 3.859 19 H 0.044 0.956 20 C 0.173 3.827 21 N -0.612 5.612 22 C 0.173 3.827 23 C -0.273 4.273 24 H 0.048 0.952 25 C -0.033 4.033 26 N -0.924 5.924 27 Si 0.964 3.036 28 H -0.285 1.285 29 H -0.286 1.286 30 H -0.275 1.275 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.144 0.856 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.030 0.970 48 H 0.021 0.979 49 H 0.018 0.982 50 H 0.010 0.990 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 15.157 19.286 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.140 0.860 4 O -0.218 6.218 5 C 0.015 3.985 6 C -0.151 4.151 7 C -0.140 4.140 8 C -0.105 4.105 9 N -0.180 5.180 10 C -0.149 4.149 11 C 0.293 3.707 12 O -0.435 6.435 13 N -0.331 5.331 14 C -0.031 4.031 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.154 4.154 18 C 0.036 3.964 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.337 5.337 22 C 0.028 3.972 23 C -0.403 4.403 24 H 0.066 0.934 25 C -0.230 4.230 26 N -0.569 5.569 27 Si 0.792 3.208 28 H -0.212 1.212 29 H -0.212 1.212 30 H -0.200 1.200 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.162 0.838 35 H 0.192 0.808 36 H 0.204 0.796 37 H 0.193 0.807 38 H 0.133 0.867 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.048 0.952 48 H 0.039 0.961 49 H 0.037 0.963 50 H 0.028 0.972 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.809 15.211 19.110 26.321 hybrid contribution 1.449 -1.486 -1.050 2.326 sum -8.360 13.725 18.061 24.176 Atomic orbital electron populations 1.22419 0.90165 1.04426 1.05893 1.22375 0.97374 0.96965 0.82070 0.86050 1.86223 1.81350 1.37852 1.16373 1.20390 0.97847 0.92622 0.87630 1.21315 1.00110 1.02377 0.91269 1.22386 0.98322 0.94498 0.98824 1.23248 0.96057 0.94474 0.96749 1.67586 1.13214 1.37522 0.99676 1.23171 1.02849 0.90229 0.98671 1.20703 0.79096 0.85961 0.84952 1.90793 1.43461 1.23333 1.85921 1.48324 1.63546 1.16735 1.04470 1.22269 0.97212 0.81050 1.02576 1.21919 0.97054 1.03064 0.94197 1.21508 1.01065 0.94263 0.98524 1.21871 0.96156 0.98277 0.99119 1.21897 0.96319 0.93896 0.84328 0.93792 1.21325 0.98438 0.89145 0.86375 1.44239 1.03785 1.58260 1.27406 1.20670 0.88850 0.95117 0.92553 1.19290 0.84699 1.45845 0.90475 0.93390 1.25918 1.00804 0.99840 0.96433 1.70114 1.32143 1.54015 1.00583 0.85323 0.80532 0.77476 0.77507 1.21197 1.21174 1.19990 0.92056 0.88541 0.87763 0.83790 0.80769 0.79604 0.80727 0.86674 0.90305 0.87296 0.90760 0.92685 0.90862 0.92931 0.92131 0.93283 0.95162 0.96122 0.96297 0.97165 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.82 71.98 0.63 -2.11 16 2 C 0.07 1.59 1.78 29.85 0.05 1.64 16 3 H 0.12 1.94 5.27 -2.39 -0.01 1.93 16 4 O -0.31 -8.36 9.37 -73.82 -0.69 -9.05 16 5 C 0.06 1.39 6.62 22.60 0.15 1.54 16 6 C -0.12 -2.40 10.13 22.56 0.23 -2.17 16 7 C -0.12 -1.63 10.11 22.35 0.23 -1.40 16 8 C 0.05 0.75 11.18 84.70 0.95 1.70 16 9 N -0.47 -8.96 10.36 -195.44 -2.02 -10.99 16 10 C 0.01 0.15 9.49 84.80 0.80 0.95 16 11 C 0.51 16.34 6.86 87.66 0.60 16.94 16 12 O -0.56 -24.23 12.11 15.80 0.19 -24.04 16 13 N -0.60 -17.73 2.97 -795.07 -2.36 -20.10 16 14 C 0.09 1.64 5.50 86.35 0.48 2.12 16 15 C -0.12 -2.07 5.95 30.66 0.18 -1.89 16 16 C -0.12 -2.94 5.88 30.62 0.18 -2.76 16 17 C -0.12 -4.15 4.44 30.67 0.14 -4.01 16 18 C 0.14 5.58 3.21 44.97 0.14 5.73 16 19 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 20 C 0.17 8.38 3.71 86.38 0.32 8.70 16 21 N -0.61 -33.51 2.68 -726.93 -1.95 -35.46 16 22 C 0.17 9.01 8.02 127.77 1.02 10.03 16 23 C -0.27 -16.12 9.52 84.03 0.80 -15.31 16 24 H 0.05 2.91 7.83 -2.91 -0.02 2.89 16 25 C -0.03 -1.91 5.17 84.86 0.44 -1.47 16 26 N -0.92 -54.50 11.10 21.65 0.24 -54.26 16 27 Si 0.96 46.47 29.56 68.60 2.03 48.49 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 29 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 30 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.11 6.91 -2.39 -0.02 1.10 16 33 H 0.10 1.26 5.53 -2.39 -0.01 1.24 16 34 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.18 2.38 5.40 -2.91 -0.02 2.37 16 38 H 0.12 1.24 4.74 -2.39 -0.01 1.23 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.16 7.48 -2.39 -0.02 1.15 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 2.71 5.51 -2.39 -0.01 2.70 16 46 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 47 H 0.03 1.48 7.11 -2.39 -0.02 1.46 16 48 H 0.02 1.10 5.54 -2.39 -0.01 1.08 16 49 H 0.02 1.04 7.27 -2.38 -0.02 1.02 16 50 H 0.01 0.47 7.98 -2.39 -0.02 0.45 16 51 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -78.29 387.99 3.72 -74.57 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.94 Total: 12.60 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.35 Total: 18.23 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -6.10 Total: -120.80 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.50 Total: -33.09 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -78.29 3.72 -74.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158479930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.116 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds