Wall clock time and date at job start Wed Apr 1 2020 04:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46964 * 2 1 4 4 O 1.42898 * 109.46677 * 239.99697 * 2 1 3 5 5 C 1.35919 * 116.99767 * 81.84707 * 4 2 1 6 6 C 1.39131 * 120.47296 * 356.38127 * 5 4 2 7 7 C 1.38540 * 118.37469 * 180.02562 * 6 5 4 8 8 C 1.38255 * 119.21528 * 359.97438 * 7 6 5 9 9 N 1.31844 * 120.89056 * 359.97438 * 8 7 6 10 10 C 1.31840 * 121.77822 * 359.70767 * 9 8 7 11 11 C 1.50699 * 109.46855 * 119.99642 * 2 1 3 12 12 O 1.21284 * 119.99773 * 115.00225 * 11 2 1 13 13 N 1.34771 * 120.00118 * 294.99827 * 11 2 1 14 14 C 1.46922 * 120.63224 * 3.57416 * 13 11 2 15 15 C 1.53196 * 108.77287 * 233.58502 * 14 13 11 16 16 C 1.53035 * 109.31600 * 305.36206 * 15 14 13 17 17 C 1.53048 * 109.53511 * 61.37007 * 16 15 14 18 18 C 1.46929 * 120.62689 * 183.55220 * 13 11 2 19 19 H 1.09004 * 109.70099 * 246.27012 * 18 13 11 20 20 C 1.52998 * 109.58827 * 6.62732 * 18 13 11 21 21 N 1.46499 * 109.47031 * 178.42337 * 20 18 13 22 22 C 1.46507 * 119.99985 * 264.34942 * 21 20 18 23 23 C 1.36937 * 120.00619 * 84.35092 * 21 20 18 24 24 H 1.08005 * 119.99468 * 320.28889 * 23 21 20 25 25 C 1.38809 * 120.00500 * 140.28024 * 23 21 20 26 26 N 1.31618 * 119.99894 * 168.85299 * 25 23 21 27 27 Si 1.86797 * 119.99795 * 348.85511 * 25 23 21 28 28 H 1.48502 * 109.47098 * 91.91231 * 27 25 23 29 29 H 1.48507 * 109.47032 * 211.90902 * 27 25 23 30 30 H 1.48498 * 109.47471 * 331.91222 * 27 25 23 31 31 H 1.09001 * 109.47107 * 59.99943 * 1 2 3 32 32 H 1.08997 * 109.46844 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46918 * 300.00071 * 1 2 3 34 34 H 1.08000 * 120.81422 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.38892 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.55186 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.65391 * 180.29091 * 10 9 8 38 38 H 1.09004 * 109.58576 * 113.80205 * 14 13 11 39 39 H 1.08998 * 109.58570 * 353.37026 * 14 13 11 40 40 H 1.09007 * 109.49593 * 185.41110 * 15 14 13 41 41 H 1.09000 * 109.49485 * 65.32084 * 15 14 13 42 42 H 1.08998 * 109.46163 * 301.34799 * 16 15 14 43 43 H 1.09002 * 109.45285 * 181.37743 * 16 15 14 44 44 H 1.08994 * 109.49751 * 178.68449 * 17 16 15 45 45 H 1.08993 * 109.52437 * 58.59995 * 17 16 15 46 46 H 1.08994 * 109.47161 * 58.41974 * 20 18 13 47 47 H 1.09004 * 109.47002 * 298.41693 * 20 18 13 48 48 H 1.08998 * 109.46811 * 84.00547 * 22 21 20 49 49 H 1.08998 * 109.47231 * 204.00783 * 22 21 20 50 50 H 1.08999 * 109.46879 * 324.00544 * 22 21 20 51 51 H 0.97003 * 120.00010 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0500 0.0450 -2.3196 6 6 1.5740 1.3519 -2.3548 7 6 1.6391 2.0442 -3.5530 8 6 2.1711 1.4191 -4.6655 9 7 2.6146 0.1793 -4.5980 10 6 2.5763 -0.5116 -3.4759 11 6 2.0323 -0.7103 1.2305 12 8 2.6530 -1.7466 1.1216 13 7 1.7919 -0.1940 2.4520 14 6 0.9755 1.0178 2.6050 15 6 1.7663 2.0453 3.4210 16 6 2.2052 1.4120 4.7433 17 6 3.1165 0.2155 4.4601 18 6 2.3409 -0.8327 3.6559 19 1 1.5284 -1.2317 4.2633 20 6 3.2831 -1.9679 3.2501 21 7 3.8580 -2.5784 4.4513 22 6 5.1725 -2.1479 4.9343 23 6 3.1669 -3.5513 5.1228 24 1 2.0975 -3.4656 5.2475 25 6 3.8406 -4.6479 5.6429 26 7 3.2256 -5.4664 6.4700 27 14 5.6200 -4.9616 5.1691 28 1 6.5175 -4.3072 6.1547 29 1 5.8790 -6.4239 5.1584 30 1 5.8783 -4.4033 3.8175 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1639 1.8153 -1.4697 35 1 1.2793 3.0605 -3.6170 36 1 2.2241 1.9537 -5.6025 37 1 2.9534 -1.5236 -3.4583 38 1 0.0501 0.7716 3.1259 39 1 0.7458 1.4301 1.6225 40 1 1.1364 2.9115 3.6239 41 1 2.6455 2.3582 2.8579 42 1 1.3267 1.0770 5.2948 43 1 2.7471 2.1488 5.3364 44 1 3.4475 -0.2208 5.4025 45 1 3.9833 0.5452 3.8875 46 1 4.0833 -1.5703 2.6260 47 1 2.7261 -2.7201 2.6913 48 1 5.0590 -1.2558 5.5501 49 1 5.6202 -2.9448 5.5280 50 1 5.8162 -1.9230 4.0839 51 1 3.6965 -6.2325 6.8338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158479931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:46 Heat of formation + Delta-G solvation = 22.780601 kcal Electronic energy + Delta-G solvation = -32025.288605 eV Core-core repulsion = 27927.429666 eV Total energy + Delta-G solvation = -4097.858939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.26073 -40.35353 -38.56218 -37.12467 -35.81500 -33.54706 -32.53816 -32.35863 -31.59820 -30.64840 -30.10839 -27.34254 -25.90108 -25.19180 -24.41316 -23.93991 -23.25332 -22.43276 -20.81344 -20.49950 -19.15641 -18.66661 -17.28681 -17.07119 -16.77938 -16.23164 -16.04176 -15.74416 -15.30513 -15.05469 -14.72324 -14.55433 -14.51399 -14.06566 -14.04076 -13.70768 -13.45551 -13.36391 -13.10365 -13.01302 -12.90489 -12.55099 -12.53027 -12.33570 -12.22668 -11.87657 -11.64356 -11.55759 -11.38414 -11.06826 -10.85788 -10.60644 -10.52248 -10.42446 -10.15636 -10.12840 -9.89121 -9.79015 -9.54830 -8.93373 -8.68326 -8.48616 -8.38610 -6.68916 -5.88739 -3.38959 0.81323 0.92041 2.34564 2.60659 3.27521 3.35670 3.49007 3.53394 3.60553 4.11582 4.23100 4.27738 4.41879 4.46264 4.54652 4.59092 4.60750 4.75534 4.77342 4.86560 4.92664 5.13549 5.17886 5.22522 5.26516 5.30463 5.34468 5.42424 5.44813 5.66277 5.69579 5.72651 5.74071 5.75497 5.81974 5.96295 5.99785 6.08073 6.21513 6.28098 6.30755 6.44867 6.52202 6.64073 6.80084 6.83938 6.91931 7.26827 7.47387 7.66525 8.13625 8.26477 8.47546 9.07435 9.78685 10.20148 11.26520 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003024 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.085670 B = 9255.978177 C =10572.368004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.065 3.935 3 H 0.093 0.907 4 O -0.274 6.274 5 C 0.087 3.913 6 C -0.172 4.172 7 C -0.131 4.131 8 C 0.052 3.948 9 N -0.446 5.446 10 C 0.077 3.923 11 C 0.514 3.486 12 O -0.494 6.494 13 N -0.600 5.600 14 C 0.097 3.903 15 C -0.134 4.134 16 C -0.121 4.121 17 C -0.124 4.124 18 C 0.127 3.873 19 H 0.077 0.923 20 C 0.160 3.840 21 N -0.613 5.613 22 C 0.107 3.893 23 C -0.264 4.264 24 H 0.078 0.922 25 C 0.029 3.971 26 N -0.913 5.913 27 Si 0.901 3.099 28 H -0.289 1.289 29 H -0.306 1.306 30 H -0.270 1.270 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.014 0.986 49 H 0.044 0.956 50 H 0.026 0.974 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 21.880 -15.231 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.005 3.995 3 H 0.111 0.889 4 O -0.184 6.184 5 C 0.039 3.961 6 C -0.198 4.198 7 C -0.151 4.151 8 C -0.105 4.105 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.299 3.701 12 O -0.367 6.367 13 N -0.336 5.336 14 C -0.026 4.026 15 C -0.172 4.172 16 C -0.159 4.159 17 C -0.162 4.162 18 C 0.023 3.977 19 H 0.095 0.905 20 C 0.034 3.966 21 N -0.338 5.338 22 C -0.038 4.038 23 C -0.392 4.392 24 H 0.096 0.904 25 C -0.171 4.171 26 N -0.556 5.556 27 Si 0.734 3.266 28 H -0.218 1.218 29 H -0.235 1.235 30 H -0.195 1.195 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.032 0.968 49 H 0.062 0.938 50 H 0.044 0.956 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.044 20.532 -15.901 26.664 hybrid contribution 0.426 0.651 0.846 1.150 sum -5.618 21.183 -15.055 26.588 Atomic orbital electron populations 1.22614 0.92765 1.05179 1.04008 1.22310 0.95774 0.96794 0.84619 0.88947 1.86285 1.80101 1.37738 1.14309 1.20285 0.96329 0.91362 0.88166 1.21780 1.03761 0.94277 1.00018 1.21991 0.99139 1.01056 0.92888 1.22677 0.97565 0.91380 0.98835 1.67758 1.14080 1.07837 1.25854 1.22307 0.99069 1.01122 0.85693 1.19851 0.80901 0.85706 0.83598 1.90865 1.38833 1.21903 1.85123 1.48189 1.51811 1.27628 1.05957 1.22012 0.94367 0.85520 1.00734 1.21931 1.00340 0.97614 0.97355 1.21550 1.00150 0.97877 0.96275 1.21971 0.97697 0.94908 1.01605 1.22376 0.97592 0.93917 0.83792 0.90544 1.21497 0.94905 0.93446 0.86731 1.44298 1.18082 1.43384 1.28068 1.21459 0.88023 0.97561 0.96732 1.18775 0.93451 0.97357 1.29665 0.90401 1.25516 0.98311 0.95399 0.97827 1.69775 1.37328 1.16370 1.32083 0.86611 0.85488 0.75249 0.79255 1.21803 1.23489 1.19482 0.90929 0.90136 0.89265 0.84223 0.84503 0.82562 0.81643 0.90822 0.89954 0.91000 0.91715 0.91743 0.92033 0.89317 0.92517 0.93720 0.89918 0.96825 0.93808 0.95565 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 8.67 37.16 0.32 -1.22 16 2 C 0.07 0.71 1.84 -27.88 -0.05 0.66 16 3 H 0.09 0.77 5.92 -51.93 -0.31 0.47 16 4 O -0.27 -3.61 9.36 -39.35 -0.37 -3.97 16 5 C 0.09 0.97 6.58 -39.08 -0.26 0.71 16 6 C -0.17 -1.43 8.22 -39.14 -0.32 -1.75 16 7 C -0.13 -0.93 10.11 -39.46 -0.40 -1.33 16 8 C 0.05 0.44 11.18 -17.54 -0.20 0.24 16 9 N -0.45 -4.99 10.36 -13.13 -0.14 -5.13 16 10 C 0.08 0.88 11.14 -17.38 -0.19 0.69 16 11 C 0.51 7.73 7.00 -10.99 -0.08 7.65 16 12 O -0.49 -9.85 12.01 -14.31 -0.17 -10.02 16 13 N -0.60 -8.13 2.97 -165.22 -0.49 -8.62 16 14 C 0.10 0.86 5.05 -3.71 -0.02 0.84 16 15 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 16 C -0.12 -1.34 5.88 -26.69 -0.16 -1.50 16 17 C -0.12 -1.85 4.57 -26.60 -0.12 -1.97 16 18 C 0.13 2.17 3.18 -67.60 -0.21 1.96 16 19 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 20 C 0.16 3.47 3.64 -4.04 -0.01 3.46 16 21 N -0.61 -15.08 2.13 -181.12 -0.39 -15.46 16 22 C 0.11 2.41 8.44 59.85 0.50 2.91 16 23 C -0.26 -7.54 9.99 -15.06 -0.15 -7.69 16 24 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 25 C 0.03 0.86 5.43 -17.43 -0.09 0.77 16 26 N -0.91 -28.60 13.97 55.49 0.78 -27.82 16 27 Si 0.90 23.73 24.60 -169.99 -4.18 19.54 16 28 H -0.29 -7.31 6.71 56.52 0.38 -6.93 16 29 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 30 H -0.27 -7.10 6.93 56.52 0.39 -6.71 16 31 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.56 5.15 -51.93 -0.27 0.29 16 34 H 0.14 0.84 5.54 -52.49 -0.29 0.55 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.51 4.44 -51.93 -0.23 0.28 16 40 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.53 6.18 -51.93 -0.32 1.21 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.98 6.95 -51.93 -0.36 0.62 16 47 H 0.08 2.03 6.22 -51.93 -0.32 1.71 16 48 H 0.01 0.28 6.50 -51.93 -0.34 -0.06 16 49 H 0.04 1.07 2.95 -51.93 -0.15 0.92 16 50 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 51 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -35.32 383.31 -8.38 -43.70 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.59 Total: -1.11 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.60 Total: 3.13 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.24 Total: -57.04 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.54 Total: -14.00 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.18 Total: 19.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.32 -8.38 -43.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158479931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.484 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds