Wall clock time and date at job start Wed Apr 1 2020 04:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46964 * 2 1 4 4 O 1.42898 * 109.46677 * 239.99697 * 2 1 3 5 5 C 1.35919 * 116.99767 * 81.84707 * 4 2 1 6 6 C 1.39131 * 120.47296 * 356.38127 * 5 4 2 7 7 C 1.38540 * 118.37469 * 180.02562 * 6 5 4 8 8 C 1.38255 * 119.21528 * 359.97438 * 7 6 5 9 9 N 1.31844 * 120.89056 * 359.97438 * 8 7 6 10 10 C 1.31840 * 121.77822 * 359.70767 * 9 8 7 11 11 C 1.50699 * 109.46855 * 119.99642 * 2 1 3 12 12 O 1.21284 * 119.99773 * 115.00225 * 11 2 1 13 13 N 1.34771 * 120.00118 * 294.99827 * 11 2 1 14 14 C 1.46922 * 120.63224 * 3.57416 * 13 11 2 15 15 C 1.53196 * 108.77287 * 233.58502 * 14 13 11 16 16 C 1.53035 * 109.31600 * 305.36206 * 15 14 13 17 17 C 1.53048 * 109.53511 * 61.37007 * 16 15 14 18 18 C 1.46929 * 120.62689 * 183.55220 * 13 11 2 19 19 H 1.09004 * 109.70099 * 246.27012 * 18 13 11 20 20 C 1.52998 * 109.58827 * 6.62732 * 18 13 11 21 21 N 1.46499 * 109.47031 * 178.42337 * 20 18 13 22 22 C 1.46507 * 119.99985 * 264.34942 * 21 20 18 23 23 C 1.36937 * 120.00619 * 84.35092 * 21 20 18 24 24 H 1.08005 * 119.99468 * 320.28889 * 23 21 20 25 25 C 1.38809 * 120.00500 * 140.28024 * 23 21 20 26 26 N 1.31618 * 119.99894 * 168.85299 * 25 23 21 27 27 Si 1.86797 * 119.99795 * 348.85511 * 25 23 21 28 28 H 1.48502 * 109.47098 * 91.91231 * 27 25 23 29 29 H 1.48507 * 109.47032 * 211.90902 * 27 25 23 30 30 H 1.48498 * 109.47471 * 331.91222 * 27 25 23 31 31 H 1.09001 * 109.47107 * 59.99943 * 1 2 3 32 32 H 1.08997 * 109.46844 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46918 * 300.00071 * 1 2 3 34 34 H 1.08000 * 120.81422 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.38892 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.55186 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.65391 * 180.29091 * 10 9 8 38 38 H 1.09004 * 109.58576 * 113.80205 * 14 13 11 39 39 H 1.08998 * 109.58570 * 353.37026 * 14 13 11 40 40 H 1.09007 * 109.49593 * 185.41110 * 15 14 13 41 41 H 1.09000 * 109.49485 * 65.32084 * 15 14 13 42 42 H 1.08998 * 109.46163 * 301.34799 * 16 15 14 43 43 H 1.09002 * 109.45285 * 181.37743 * 16 15 14 44 44 H 1.08994 * 109.49751 * 178.68449 * 17 16 15 45 45 H 1.08993 * 109.52437 * 58.59995 * 17 16 15 46 46 H 1.08994 * 109.47161 * 58.41974 * 20 18 13 47 47 H 1.09004 * 109.47002 * 298.41693 * 20 18 13 48 48 H 1.08998 * 109.46811 * 84.00547 * 22 21 20 49 49 H 1.08998 * 109.47231 * 204.00783 * 22 21 20 50 50 H 1.08999 * 109.46879 * 324.00544 * 22 21 20 51 51 H 0.97003 * 120.00010 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0500 0.0450 -2.3196 6 6 1.5740 1.3519 -2.3548 7 6 1.6391 2.0442 -3.5530 8 6 2.1711 1.4191 -4.6655 9 7 2.6146 0.1793 -4.5980 10 6 2.5763 -0.5116 -3.4759 11 6 2.0323 -0.7103 1.2305 12 8 2.6530 -1.7466 1.1216 13 7 1.7919 -0.1940 2.4520 14 6 0.9755 1.0178 2.6050 15 6 1.7663 2.0453 3.4210 16 6 2.2052 1.4120 4.7433 17 6 3.1165 0.2155 4.4601 18 6 2.3409 -0.8327 3.6559 19 1 1.5284 -1.2317 4.2633 20 6 3.2831 -1.9679 3.2501 21 7 3.8580 -2.5784 4.4513 22 6 5.1725 -2.1479 4.9343 23 6 3.1669 -3.5513 5.1228 24 1 2.0975 -3.4656 5.2475 25 6 3.8406 -4.6479 5.6429 26 7 3.2256 -5.4664 6.4700 27 14 5.6200 -4.9616 5.1691 28 1 6.5175 -4.3072 6.1547 29 1 5.8790 -6.4239 5.1584 30 1 5.8783 -4.4033 3.8175 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1639 1.8153 -1.4697 35 1 1.2793 3.0605 -3.6170 36 1 2.2241 1.9537 -5.6025 37 1 2.9534 -1.5236 -3.4583 38 1 0.0501 0.7716 3.1259 39 1 0.7458 1.4301 1.6225 40 1 1.1364 2.9115 3.6239 41 1 2.6455 2.3582 2.8579 42 1 1.3267 1.0770 5.2948 43 1 2.7471 2.1488 5.3364 44 1 3.4475 -0.2208 5.4025 45 1 3.9833 0.5452 3.8875 46 1 4.0833 -1.5703 2.6260 47 1 2.7261 -2.7201 2.6913 48 1 5.0590 -1.2558 5.5501 49 1 5.6202 -2.9448 5.5280 50 1 5.8162 -1.9230 4.0839 51 1 3.6965 -6.2325 6.8338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158479931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:45 Heat of formation + Delta-G solvation = -1.046070 kcal Electronic energy + Delta-G solvation = -32026.321807 eV Core-core repulsion = 27927.429666 eV Total energy + Delta-G solvation = -4098.892141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.17990 -41.30638 -39.44909 -38.29903 -37.56049 -34.69115 -33.89633 -33.21497 -33.01588 -31.84287 -30.90419 -28.78982 -27.73342 -26.44197 -25.28919 -24.71320 -24.25424 -23.57902 -22.32623 -21.62928 -20.21625 -19.49925 -18.91383 -18.12444 -17.73857 -17.50308 -17.21820 -17.07024 -16.69702 -16.07072 -15.85899 -15.50912 -15.40137 -15.18977 -14.95814 -14.79405 -14.74742 -14.60465 -14.42485 -14.27919 -14.22698 -13.97245 -13.85307 -13.35126 -13.24713 -13.15204 -12.79677 -12.67042 -12.49004 -12.42609 -12.24974 -12.03242 -11.85601 -11.82178 -11.61065 -11.59164 -11.39702 -10.77003 -10.72151 -10.56772 -10.23195 -9.58930 -9.45924 -8.74125 -8.20201 -5.67506 0.15352 0.25347 1.22879 1.37200 1.40996 1.48332 1.48592 2.33716 2.37360 2.80768 3.09381 3.23843 3.41738 3.53488 3.58987 3.75923 3.78489 3.86688 3.90245 3.93095 3.98985 4.11501 4.15516 4.32151 4.33234 4.37079 4.44113 4.53530 4.57343 4.57818 4.67098 4.71902 4.78298 4.81612 4.84319 4.99709 5.02470 5.05012 5.08679 5.12450 5.14333 5.17321 5.27031 5.34753 5.46547 5.48496 5.66822 5.92729 6.11746 6.16334 6.40353 6.92593 6.98060 7.14453 7.58731 8.01777 8.98661 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003024 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.085670 B = 9255.978177 C =10572.368004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 H 0.129 0.871 4 O -0.309 6.309 5 C 0.068 3.932 6 C -0.165 4.165 7 C -0.117 4.117 8 C 0.045 3.955 9 N -0.474 5.474 10 C 0.047 3.953 11 C 0.503 3.497 12 O -0.559 6.559 13 N -0.595 5.595 14 C 0.086 3.914 15 C -0.127 4.127 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.138 3.862 19 H 0.051 0.949 20 C 0.171 3.829 21 N -0.626 5.626 22 C 0.106 3.894 23 C -0.250 4.250 24 H 0.043 0.957 25 C -0.028 4.028 26 N -0.957 5.957 27 Si 0.964 3.036 28 H -0.267 1.267 29 H -0.311 1.311 30 H -0.273 1.273 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.043 0.957 48 H 0.040 0.960 49 H 0.028 0.972 50 H 0.043 0.957 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 27.224 -16.438 32.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.013 3.987 3 H 0.147 0.853 4 O -0.221 6.221 5 C 0.020 3.980 6 C -0.191 4.191 7 C -0.136 4.136 8 C -0.112 4.112 9 N -0.184 5.184 10 C -0.110 4.110 11 C 0.290 3.710 12 O -0.436 6.436 13 N -0.330 5.330 14 C -0.034 4.034 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.154 4.154 18 C 0.033 3.967 19 H 0.069 0.931 20 C 0.046 3.954 21 N -0.352 5.352 22 C -0.038 4.038 23 C -0.380 4.380 24 H 0.061 0.939 25 C -0.224 4.224 26 N -0.602 5.602 27 Si 0.795 3.205 28 H -0.194 1.194 29 H -0.240 1.240 30 H -0.198 1.198 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.189 0.811 35 H 0.197 0.803 36 H 0.201 0.799 37 H 0.168 0.832 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.046 0.954 50 H 0.062 0.938 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.692 25.950 -17.117 31.799 hybrid contribution 0.526 -0.915 1.120 1.539 sum -6.166 25.035 -15.997 30.342 Atomic orbital electron populations 1.22638 0.90450 1.04418 1.06439 1.22362 0.97214 0.97151 0.81931 0.85335 1.86241 1.81004 1.39437 1.15427 1.20360 0.97716 0.92756 0.87157 1.22147 1.02504 0.92739 1.01713 1.22446 0.97163 1.02501 0.91526 1.23304 0.96573 0.90553 1.00763 1.67732 1.15336 1.09458 1.25862 1.22209 1.00822 1.01240 0.86758 1.20769 0.79880 0.85164 0.85141 1.90839 1.41839 1.24809 1.86157 1.48214 1.51722 1.28710 1.04353 1.22480 0.94009 0.83539 1.03408 1.21935 1.01106 0.98138 0.95296 1.21540 0.99221 0.96387 0.98399 1.21841 0.98317 0.95691 0.99558 1.21791 0.96033 0.93596 0.85301 0.93107 1.21332 0.95038 0.93900 0.85164 1.44407 1.18836 1.43298 1.28700 1.21509 0.86817 0.97881 0.97566 1.18645 0.92373 0.98233 1.28794 0.93948 1.26167 1.02560 0.95395 0.98230 1.69899 1.39169 1.17307 1.33836 0.85595 0.81178 0.74703 0.79069 1.19421 1.24021 1.19768 0.88345 0.92666 0.86753 0.81117 0.80262 0.79863 0.83191 0.89718 0.86091 0.87217 0.91237 0.92093 0.90443 0.92100 0.92391 0.94032 0.93831 0.94229 0.95370 0.93820 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.67 71.98 0.62 -1.81 16 2 C 0.07 1.44 1.84 29.85 0.05 1.49 16 3 H 0.13 1.55 5.92 -2.39 -0.01 1.54 16 4 O -0.31 -8.19 9.36 -73.65 -0.69 -8.88 16 5 C 0.07 1.45 6.58 22.60 0.15 1.59 16 6 C -0.16 -2.08 8.22 22.56 0.19 -1.90 16 7 C -0.12 -1.12 10.11 22.35 0.23 -0.90 16 8 C 0.05 0.64 11.18 84.70 0.95 1.59 16 9 N -0.47 -10.44 10.36 -195.44 -2.02 -12.47 16 10 C 0.05 1.12 11.14 84.80 0.94 2.07 16 11 C 0.50 15.15 7.00 87.66 0.61 15.76 16 12 O -0.56 -23.77 12.01 15.95 0.19 -23.58 16 13 N -0.60 -15.56 2.97 -795.01 -2.36 -17.92 16 14 C 0.09 1.19 5.05 86.36 0.44 1.62 16 15 C -0.13 -1.54 6.08 30.67 0.19 -1.35 16 16 C -0.12 -2.27 5.88 30.62 0.18 -2.09 16 17 C -0.12 -3.37 4.57 30.68 0.14 -3.23 16 18 C 0.14 4.84 3.18 44.98 0.14 4.98 16 19 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.17 7.79 3.64 86.38 0.31 8.10 16 21 N -0.63 -31.89 2.13 -726.93 -1.55 -33.43 16 22 C 0.11 4.76 8.44 127.77 1.08 5.83 16 23 C -0.25 -15.06 9.99 84.03 0.84 -14.22 16 24 H 0.04 2.80 8.06 -2.91 -0.02 2.77 16 25 C -0.03 -1.73 5.43 84.86 0.46 -1.27 16 26 N -0.96 -62.34 13.97 21.65 0.30 -62.04 16 27 Si 0.96 50.39 24.60 68.60 1.69 52.07 16 28 H -0.27 -12.90 6.71 99.48 0.67 -12.24 16 29 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 30 H -0.27 -14.20 6.93 99.48 0.69 -13.51 16 31 H 0.10 0.84 6.70 -2.39 -0.02 0.83 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 0.90 5.15 -2.39 -0.01 0.89 16 34 H 0.17 0.97 5.54 -2.91 -0.02 0.96 16 35 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 0.76 4.44 -2.39 -0.01 0.75 16 40 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 2.10 6.18 -2.39 -0.01 2.08 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.04 1.90 6.95 -2.39 -0.02 1.89 16 47 H 0.04 2.32 6.22 -2.38 -0.01 2.31 16 48 H 0.04 1.58 6.50 -2.39 -0.02 1.56 16 49 H 0.03 1.35 2.95 -2.39 -0.01 1.35 16 50 H 0.04 1.79 7.96 -2.39 -0.02 1.77 16 51 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -86.27 383.31 3.97 -82.30 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.89 Total: 7.67 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 7.52 Total: 16.28 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -5.63 Total: -125.86 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.50 Total: -32.46 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.69 Total: 52.07 kcal Total: -86.27 3.97 -82.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158479931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.251 kcal (2) G-P(sol) polarization free energy of solvation -86.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds