Wall clock time and date at job start Wed Apr 1 2020 04:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47158 * 2 1 4 4 O 1.42900 * 109.47512 * 119.99447 * 2 1 3 5 5 C 1.35677 * 117.00371 * 270.00453 * 4 2 1 6 6 C 1.38915 * 119.68748 * 179.72325 * 5 4 2 7 7 C 1.38372 * 119.11145 * 179.70812 * 6 5 4 8 8 C 1.38828 * 118.48755 * 0.55679 * 7 6 5 9 9 C 1.38053 * 119.28540 * 359.72528 * 8 7 6 10 10 N 1.31961 * 120.83400 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.47335 * 239.99590 * 2 1 3 12 12 O 1.21273 * 120.00125 * 250.06697 * 11 2 1 13 13 N 1.34779 * 119.99721 * 70.06302 * 11 2 1 14 14 C 1.46924 * 120.63031 * 5.87645 * 13 11 2 15 15 C 1.53196 * 108.77541 * 233.58439 * 14 13 11 16 16 C 1.53039 * 109.31548 * 305.36596 * 15 14 13 17 17 C 1.53039 * 109.53645 * 61.36559 * 16 15 14 18 18 C 1.46924 * 120.63106 * 185.85645 * 13 11 2 19 19 H 1.09002 * 109.70495 * 246.26993 * 18 13 11 20 20 C 1.53005 * 109.58616 * 6.62374 * 18 13 11 21 21 N 1.46495 * 109.46982 * 178.51714 * 20 18 13 22 22 C 1.46503 * 120.00060 * 94.53639 * 21 20 18 23 23 C 1.36937 * 120.00092 * 274.53121 * 21 20 18 24 24 H 1.08000 * 120.00098 * 5.24471 * 23 21 20 25 25 C 1.38811 * 119.99952 * 185.23703 * 23 21 20 26 26 N 1.31624 * 120.00364 * 5.30243 * 25 23 21 27 27 Si 1.86800 * 120.00186 * 185.29902 * 25 23 21 28 28 H 1.48502 * 109.46995 * 90.00205 * 27 25 23 29 29 H 1.48494 * 109.47590 * 210.00315 * 27 25 23 30 30 H 1.48504 * 109.47166 * 330.00506 * 27 25 23 31 31 H 1.08998 * 109.47628 * 65.03462 * 1 2 3 32 32 H 1.08999 * 109.47219 * 185.03101 * 1 2 3 33 33 H 1.08998 * 109.46969 * 305.03305 * 1 2 3 34 34 H 1.08008 * 120.44154 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.76008 * 180.28753 * 7 6 5 36 36 H 1.08001 * 120.35915 * 179.71173 * 8 7 6 37 37 H 1.07995 * 119.57978 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.58736 * 113.80601 * 14 13 11 39 39 H 1.09000 * 109.59276 * 353.37359 * 14 13 11 40 40 H 1.09005 * 109.49885 * 185.41454 * 15 14 13 41 41 H 1.09003 * 109.52032 * 65.33671 * 15 14 13 42 42 H 1.08993 * 109.46034 * 301.34558 * 16 15 14 43 43 H 1.09000 * 109.44868 * 181.37250 * 16 15 14 44 44 H 1.09003 * 109.50106 * 178.68447 * 17 16 15 45 45 H 1.09007 * 109.52845 * 58.59880 * 17 16 15 46 46 H 1.08997 * 109.46715 * 58.51450 * 20 18 13 47 47 H 1.09003 * 109.46835 * 298.51986 * 20 18 13 48 48 H 1.08999 * 109.47264 * 354.87068 * 22 21 20 49 49 H 1.09003 * 109.47368 * 114.86772 * 22 21 20 50 50 H 1.08998 * 109.47218 * 234.87072 * 22 21 20 51 51 H 0.96993 * 120.00426 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2117 0.0831 2.2742 6 6 2.6688 -0.5156 3.4414 7 6 2.8799 0.2683 4.5619 8 6 2.6139 1.6283 4.4784 9 6 2.1556 2.1548 3.2873 10 7 1.9697 1.3826 2.2335 11 6 2.0324 -0.7105 -1.2304 12 8 2.5721 -1.7917 -1.1284 13 7 1.8817 -0.1443 -2.4442 14 6 1.3476 1.2183 -2.5735 15 6 0.1591 1.1924 -3.5398 16 6 0.5964 0.5605 -4.8632 17 6 1.0504 -0.8802 -4.6172 18 6 2.2490 -0.8777 -3.6631 19 1 3.0975 -0.3905 -4.1436 20 6 2.6209 -2.3175 -3.3030 21 7 2.9524 -3.0562 -4.5239 22 6 4.3473 -3.1646 -4.9585 23 6 1.9585 -3.6454 -5.2588 24 1 0.9242 -3.4951 -4.9867 25 6 2.2804 -4.4356 -6.3537 26 7 3.5403 -4.7043 -6.6239 27 14 0.9255 -5.1180 -7.4437 28 1 0.6378 -4.1552 -8.5371 29 1 1.3632 -6.4120 -8.0261 30 1 -0.3016 -5.3292 -6.6345 31 1 -0.3634 0.4337 -0.9316 32 1 -0.3633 -1.0237 0.0901 33 1 -0.3633 0.5899 0.8415 34 1 2.8618 -1.5778 3.4723 35 1 3.2393 -0.1685 5.4820 36 1 2.7635 2.2675 5.3359 37 1 1.9475 3.2122 3.2168 38 1 2.1217 1.8787 -2.9643 39 1 1.0177 1.5757 -1.5980 40 1 -0.1861 2.2106 -3.7193 41 1 -0.6502 0.6050 -3.1060 42 1 1.4218 1.1344 -5.2844 43 1 -0.2411 0.5631 -5.5609 44 1 1.3396 -1.3372 -5.5636 45 1 0.2333 -1.4489 -4.1732 46 1 1.7777 -2.7970 -2.8058 47 1 3.4823 -2.3140 -2.6351 48 1 4.9791 -2.5623 -4.3057 49 1 4.6632 -4.2067 -4.9093 50 1 4.4374 -2.8056 -5.9837 51 1 3.7652 -5.2568 -7.3887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158751535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:26 Heat of formation + Delta-G solvation = 19.044327 kcal Electronic energy + Delta-G solvation = -32020.169423 eV Core-core repulsion = 27922.148467 eV Total energy + Delta-G solvation = -4098.020956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05187 -40.21510 -38.22064 -36.89557 -35.51903 -33.19145 -32.73311 -32.27165 -31.37325 -30.24867 -29.78382 -26.61510 -25.83232 -24.91568 -24.31157 -23.76724 -23.13396 -22.09548 -20.68750 -20.41171 -18.78547 -18.63963 -17.19282 -16.70714 -16.47663 -16.04476 -15.95573 -15.56368 -15.19278 -14.78639 -14.54575 -14.30941 -14.07748 -13.89727 -13.74633 -13.43358 -13.30619 -13.26559 -13.01621 -12.61453 -12.50616 -12.31862 -12.23454 -12.19315 -11.84516 -11.51819 -11.21991 -11.11757 -10.95731 -10.73632 -10.65540 -10.56343 -10.34337 -10.22538 -10.19458 -10.01925 -9.87519 -9.79683 -9.56480 -8.84523 -8.63809 -8.39871 -8.21297 -6.73236 -5.51066 -2.93508 0.88952 0.99648 2.50058 2.78554 3.40456 3.44528 3.50237 3.51760 3.52844 4.00633 4.44342 4.56924 4.60424 4.72750 4.78898 4.85762 4.86374 4.94749 4.98857 5.00416 5.13726 5.39371 5.43297 5.46927 5.52880 5.54083 5.57119 5.58665 5.67946 5.78773 5.88039 5.91572 5.98202 6.02686 6.06027 6.14091 6.19388 6.22687 6.49966 6.55357 6.76635 6.93670 6.98563 7.04753 7.10605 7.35679 7.57216 7.66384 7.75790 7.84905 8.07406 8.42294 8.53935 9.40659 10.05974 10.49901 11.47970 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.002746 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.130115 B =10192.617078 C =11082.310237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.274 6.274 5 C 0.327 3.673 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.218 4.218 9 C 0.139 3.861 10 N -0.544 5.544 11 C 0.512 3.488 12 O -0.504 6.504 13 N -0.600 5.600 14 C 0.100 3.900 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.121 4.121 18 C 0.125 3.875 19 H 0.063 0.937 20 C 0.161 3.839 21 N -0.611 5.611 22 C 0.170 3.830 23 C -0.235 4.235 24 H 0.074 0.926 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.903 3.097 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.072 0.928 48 H -0.011 1.011 49 H 0.046 0.954 50 H 0.034 0.966 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 18.340 19.058 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 H 0.126 0.874 4 O -0.179 6.179 5 C 0.148 3.852 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.238 4.238 9 C -0.016 4.016 10 N -0.268 5.268 11 C 0.297 3.703 12 O -0.378 6.378 13 N -0.336 5.336 14 C -0.023 4.023 15 C -0.172 4.172 16 C -0.160 4.160 17 C -0.159 4.159 18 C 0.021 3.979 19 H 0.081 0.919 20 C 0.034 3.966 21 N -0.335 5.335 22 C 0.025 3.975 23 C -0.364 4.364 24 H 0.091 0.909 25 C -0.205 4.205 26 N -0.567 5.567 27 Si 0.734 3.266 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.008 0.992 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.866 17.656 18.130 25.770 hybrid contribution -0.590 -0.336 -0.060 0.682 sum -5.456 17.319 18.070 25.617 Atomic orbital electron populations 1.22232 0.92569 1.03953 1.03641 1.22181 0.95745 0.97780 0.83087 0.87382 1.86421 1.79527 1.34321 1.17621 1.19951 0.90754 0.87329 0.87199 1.21137 1.06024 1.02392 0.91388 1.21423 0.94058 0.93432 0.97681 1.21966 1.05640 0.96239 0.99975 1.22405 0.92719 0.99141 0.87381 1.67266 1.22047 1.04829 1.32655 1.20091 0.79993 0.86284 0.83896 1.90810 1.41231 1.20618 1.85143 1.48296 1.63839 1.15519 1.05924 1.21855 0.96419 0.83759 1.00302 1.21933 0.97532 1.01018 0.96690 1.21586 1.00781 0.97539 0.96046 1.22002 0.97376 0.94743 1.01824 1.22553 0.96294 0.96170 0.82891 0.91855 1.21400 1.00485 0.87370 0.87356 1.44316 1.04095 1.59476 1.25635 1.21001 0.82108 0.98881 0.95461 1.19335 0.88005 1.22581 1.06525 0.90853 1.24856 0.96137 0.99967 0.99573 1.70209 1.14855 1.42066 1.29614 0.86251 0.81186 0.78319 0.80850 1.21764 1.21857 1.20792 0.90007 0.91012 0.91082 0.83842 0.84172 0.84654 0.82443 0.91324 0.90099 0.91253 0.91603 0.92218 0.92112 0.88104 0.92411 0.93525 0.91034 0.99202 0.93543 0.94734 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.13 37.16 0.34 -1.53 16 2 C 0.07 0.97 2.04 -27.88 -0.06 0.92 16 3 H 0.11 1.32 5.97 -51.93 -0.31 1.01 16 4 O -0.27 -4.10 9.31 -38.44 -0.36 -4.46 16 5 C 0.33 4.10 7.45 -17.12 -0.13 3.98 16 6 C -0.19 -1.95 10.04 -39.28 -0.39 -2.35 16 7 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 8 C -0.22 -1.49 10.11 -39.43 -0.40 -1.89 16 9 C 0.14 1.12 11.18 -17.56 -0.20 0.93 16 10 N -0.54 -6.04 8.65 -13.33 -0.12 -6.15 16 11 C 0.51 8.64 6.87 -10.98 -0.08 8.57 16 12 O -0.50 -10.68 12.09 -14.14 -0.17 -10.85 16 13 N -0.60 -9.30 2.97 -165.22 -0.49 -9.79 16 14 C 0.10 1.12 5.50 -3.71 -0.02 1.10 16 15 C -0.13 -1.44 5.95 -26.61 -0.16 -1.60 16 16 C -0.12 -1.64 5.88 -26.69 -0.16 -1.80 16 17 C -0.12 -2.16 4.14 -26.61 -0.11 -2.27 16 18 C 0.13 2.35 3.21 -67.60 -0.22 2.13 16 19 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.16 3.72 3.68 -4.04 -0.01 3.71 16 21 N -0.61 -16.12 2.81 -181.12 -0.51 -16.63 16 22 C 0.17 4.51 8.98 59.85 0.54 5.04 16 23 C -0.24 -6.52 7.70 -15.06 -0.12 -6.64 16 24 H 0.07 1.98 7.11 -52.49 -0.37 1.61 16 25 C -0.01 -0.28 5.42 -17.43 -0.09 -0.37 16 26 N -0.92 -27.44 9.53 55.49 0.53 -26.91 16 27 Si 0.90 22.41 29.56 -169.99 -5.02 17.39 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 31 H 0.08 0.81 5.52 -51.93 -0.29 0.52 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.75 4.72 -51.93 -0.25 0.50 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.73 7.50 -51.93 -0.39 0.34 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 2.13 6.48 -51.93 -0.34 1.79 16 45 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 46 H 0.05 1.15 7.21 -51.93 -0.37 0.78 16 47 H 0.07 1.74 5.93 -51.93 -0.31 1.44 16 48 H -0.01 -0.26 7.78 -51.93 -0.40 -0.66 16 49 H 0.05 1.34 6.90 -51.93 -0.36 0.99 16 50 H 0.03 0.96 7.22 -51.93 -0.38 0.58 16 51 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -33.71 391.55 -9.86 -43.57 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.96 Total: 0.69 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.66 Total: 7.23 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.59 Total: -59.48 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.53 Total: -15.31 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.71 -9.86 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158751535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.618 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds