Wall clock time and date at job start Wed Apr 1 2020 04:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47158 * 2 1 4 4 O 1.42900 * 109.47512 * 119.99447 * 2 1 3 5 5 C 1.35677 * 117.00371 * 270.00453 * 4 2 1 6 6 C 1.38915 * 119.68748 * 179.72325 * 5 4 2 7 7 C 1.38372 * 119.11145 * 179.70812 * 6 5 4 8 8 C 1.38828 * 118.48755 * 0.55679 * 7 6 5 9 9 C 1.38053 * 119.28540 * 359.72528 * 8 7 6 10 10 N 1.31961 * 120.83400 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.47335 * 239.99590 * 2 1 3 12 12 O 1.21273 * 120.00125 * 250.06697 * 11 2 1 13 13 N 1.34779 * 119.99721 * 70.06302 * 11 2 1 14 14 C 1.46924 * 120.63031 * 5.87645 * 13 11 2 15 15 C 1.53196 * 108.77541 * 233.58439 * 14 13 11 16 16 C 1.53039 * 109.31548 * 305.36596 * 15 14 13 17 17 C 1.53039 * 109.53645 * 61.36559 * 16 15 14 18 18 C 1.46924 * 120.63106 * 185.85645 * 13 11 2 19 19 H 1.09002 * 109.70495 * 246.26993 * 18 13 11 20 20 C 1.53005 * 109.58616 * 6.62374 * 18 13 11 21 21 N 1.46495 * 109.46982 * 178.51714 * 20 18 13 22 22 C 1.46503 * 120.00060 * 94.53639 * 21 20 18 23 23 C 1.36937 * 120.00092 * 274.53121 * 21 20 18 24 24 H 1.08000 * 120.00098 * 5.24471 * 23 21 20 25 25 C 1.38811 * 119.99952 * 185.23703 * 23 21 20 26 26 N 1.31624 * 120.00364 * 5.30243 * 25 23 21 27 27 Si 1.86800 * 120.00186 * 185.29902 * 25 23 21 28 28 H 1.48502 * 109.46995 * 90.00205 * 27 25 23 29 29 H 1.48494 * 109.47590 * 210.00315 * 27 25 23 30 30 H 1.48504 * 109.47166 * 330.00506 * 27 25 23 31 31 H 1.08998 * 109.47628 * 65.03462 * 1 2 3 32 32 H 1.08999 * 109.47219 * 185.03101 * 1 2 3 33 33 H 1.08998 * 109.46969 * 305.03305 * 1 2 3 34 34 H 1.08008 * 120.44154 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.76008 * 180.28753 * 7 6 5 36 36 H 1.08001 * 120.35915 * 179.71173 * 8 7 6 37 37 H 1.07995 * 119.57978 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.58736 * 113.80601 * 14 13 11 39 39 H 1.09000 * 109.59276 * 353.37359 * 14 13 11 40 40 H 1.09005 * 109.49885 * 185.41454 * 15 14 13 41 41 H 1.09003 * 109.52032 * 65.33671 * 15 14 13 42 42 H 1.08993 * 109.46034 * 301.34558 * 16 15 14 43 43 H 1.09000 * 109.44868 * 181.37250 * 16 15 14 44 44 H 1.09003 * 109.50106 * 178.68447 * 17 16 15 45 45 H 1.09007 * 109.52845 * 58.59880 * 17 16 15 46 46 H 1.08997 * 109.46715 * 58.51450 * 20 18 13 47 47 H 1.09003 * 109.46835 * 298.51986 * 20 18 13 48 48 H 1.08999 * 109.47264 * 354.87068 * 22 21 20 49 49 H 1.09003 * 109.47368 * 114.86772 * 22 21 20 50 50 H 1.08998 * 109.47218 * 234.87072 * 22 21 20 51 51 H 0.96993 * 120.00426 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2117 0.0831 2.2742 6 6 2.6688 -0.5156 3.4414 7 6 2.8799 0.2683 4.5619 8 6 2.6139 1.6283 4.4784 9 6 2.1556 2.1548 3.2873 10 7 1.9697 1.3826 2.2335 11 6 2.0324 -0.7105 -1.2304 12 8 2.5721 -1.7917 -1.1284 13 7 1.8817 -0.1443 -2.4442 14 6 1.3476 1.2183 -2.5735 15 6 0.1591 1.1924 -3.5398 16 6 0.5964 0.5605 -4.8632 17 6 1.0504 -0.8802 -4.6172 18 6 2.2490 -0.8777 -3.6631 19 1 3.0975 -0.3905 -4.1436 20 6 2.6209 -2.3175 -3.3030 21 7 2.9524 -3.0562 -4.5239 22 6 4.3473 -3.1646 -4.9585 23 6 1.9585 -3.6454 -5.2588 24 1 0.9242 -3.4951 -4.9867 25 6 2.2804 -4.4356 -6.3537 26 7 3.5403 -4.7043 -6.6239 27 14 0.9255 -5.1180 -7.4437 28 1 0.6378 -4.1552 -8.5371 29 1 1.3632 -6.4120 -8.0261 30 1 -0.3016 -5.3292 -6.6345 31 1 -0.3634 0.4337 -0.9316 32 1 -0.3633 -1.0237 0.0901 33 1 -0.3633 0.5899 0.8415 34 1 2.8618 -1.5778 3.4723 35 1 3.2393 -0.1685 5.4820 36 1 2.7635 2.2675 5.3359 37 1 1.9475 3.2122 3.2168 38 1 2.1217 1.8787 -2.9643 39 1 1.0177 1.5757 -1.5980 40 1 -0.1861 2.2106 -3.7193 41 1 -0.6502 0.6050 -3.1060 42 1 1.4218 1.1344 -5.2844 43 1 -0.2411 0.5631 -5.5609 44 1 1.3396 -1.3372 -5.5636 45 1 0.2333 -1.4489 -4.1732 46 1 1.7777 -2.7970 -2.8058 47 1 3.4823 -2.3140 -2.6351 48 1 4.9791 -2.5623 -4.3057 49 1 4.6632 -4.2067 -4.9093 50 1 4.4374 -2.8056 -5.9837 51 1 3.7652 -5.2568 -7.3887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158751535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:25 Heat of formation + Delta-G solvation = -2.379112 kcal Electronic energy + Delta-G solvation = -32021.098414 eV Core-core repulsion = 27922.148467 eV Total energy + Delta-G solvation = -4098.949946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07559 -41.27205 -39.22190 -38.19116 -37.41249 -34.50317 -33.75733 -33.41527 -32.71778 -31.58703 -30.82366 -28.14607 -28.02252 -26.19717 -25.37321 -24.53614 -24.19777 -23.46472 -22.19285 -21.83155 -20.01444 -19.55011 -18.78114 -18.15032 -17.55033 -17.20511 -16.83303 -16.78039 -16.62405 -16.08904 -15.52453 -15.45383 -15.41852 -15.26277 -15.05922 -14.76940 -14.59918 -14.30380 -14.13980 -14.05033 -13.93023 -13.72336 -13.34648 -13.19660 -12.95368 -12.85582 -12.75393 -12.68551 -12.61182 -12.22033 -12.19231 -12.10417 -11.97962 -11.86173 -11.73594 -11.53400 -11.28532 -10.88589 -10.64850 -10.58251 -10.20100 -9.57894 -9.46840 -8.88677 -7.70890 -5.16321 0.22521 0.34099 1.43607 1.44897 1.47162 1.48281 1.54979 2.32986 2.53804 2.84693 3.27936 3.30495 3.40596 3.75289 3.84159 3.90839 3.92877 3.99412 4.03676 4.06833 4.13789 4.16315 4.24873 4.35870 4.37515 4.45934 4.59572 4.61040 4.64004 4.70805 4.79519 4.81893 4.82905 4.97948 5.04037 5.09292 5.11315 5.13169 5.17410 5.30752 5.31441 5.37027 5.51072 5.54081 5.55196 5.60100 5.73017 5.81850 6.19815 6.31167 6.42209 6.86992 7.11893 7.19808 7.91678 8.32876 9.27757 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.002746 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.130115 B =10192.617078 C =11082.310237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.307 6.307 5 C 0.293 3.707 6 C -0.210 4.210 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.129 3.871 10 N -0.557 5.557 11 C 0.503 3.497 12 O -0.560 6.560 13 N -0.596 5.596 14 C 0.093 3.907 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.138 3.862 19 H 0.058 0.942 20 C 0.173 3.827 21 N -0.626 5.626 22 C 0.189 3.811 23 C -0.235 4.235 24 H 0.076 0.924 25 C -0.068 4.068 26 N -0.950 5.950 27 Si 0.970 3.030 28 H -0.282 1.282 29 H -0.297 1.297 30 H -0.273 1.273 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.022 0.978 47 H 0.054 0.946 48 H 0.010 0.990 49 H 0.016 0.984 50 H 0.017 0.983 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 22.280 20.856 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.143 0.857 4 O -0.214 6.214 5 C 0.115 3.885 6 C -0.230 4.230 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.026 4.026 10 N -0.281 5.281 11 C 0.290 3.710 12 O -0.438 6.438 13 N -0.331 5.331 14 C -0.028 4.028 15 C -0.164 4.164 16 C -0.154 4.154 17 C -0.151 4.151 18 C 0.033 3.967 19 H 0.076 0.924 20 C 0.047 3.953 21 N -0.351 5.351 22 C 0.044 3.956 23 C -0.365 4.365 24 H 0.093 0.907 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.799 3.201 28 H -0.208 1.208 29 H -0.224 1.224 30 H -0.198 1.198 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.208 0.792 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.028 0.972 49 H 0.035 0.965 50 H 0.035 0.965 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.787 21.675 19.964 30.240 hybrid contribution 0.050 -1.477 -0.410 1.533 sum -6.737 20.198 19.554 28.909 Atomic orbital electron populations 1.22199 0.90746 1.03295 1.05208 1.22091 0.96801 0.97397 0.81266 0.85738 1.86371 1.80503 1.35916 1.18602 1.20171 0.93088 0.88222 0.86982 1.21335 1.06962 1.02710 0.92042 1.21838 0.92928 0.93821 0.97654 1.22420 1.03199 0.96159 1.00624 1.23085 0.92043 1.00349 0.87107 1.67223 1.22507 1.04219 1.34126 1.20881 0.79032 0.85829 0.85229 1.90776 1.43766 1.23211 1.86055 1.48283 1.63370 1.17029 1.04374 1.22247 0.97176 0.81036 1.02322 1.21931 0.96994 1.03004 0.94489 1.21546 1.01405 0.94202 0.98239 1.21810 0.96172 0.97887 0.99269 1.21940 0.96842 0.93478 0.84473 0.92352 1.21236 0.98803 0.89687 0.85539 1.44535 1.03801 1.60465 1.26322 1.20657 0.82813 0.97215 0.94913 1.19564 0.88367 1.22079 1.06455 0.90660 1.25656 0.98406 1.00802 1.01128 1.70413 1.16666 1.42983 1.29993 0.85199 0.78677 0.77211 0.79036 1.20823 1.22405 1.19790 0.88249 0.92862 0.89451 0.84511 0.81188 0.81021 0.79197 0.89677 0.87340 0.87231 0.91578 0.91568 0.90946 0.91817 0.93855 0.95934 0.92772 0.97169 0.96537 0.96484 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.13 71.98 0.66 -2.65 16 2 C 0.08 2.24 2.04 29.85 0.06 2.30 16 3 H 0.13 2.83 5.97 -2.39 -0.01 2.81 16 4 O -0.31 -9.54 9.31 -71.10 -0.66 -10.20 16 5 C 0.29 7.33 7.45 84.79 0.63 7.96 16 6 C -0.21 -4.32 10.04 22.46 0.23 -4.09 16 7 C -0.04 -0.47 10.17 22.44 0.23 -0.24 16 8 C -0.20 -2.02 10.11 22.37 0.23 -1.79 16 9 C 0.13 1.66 11.18 84.63 0.95 2.61 16 10 N -0.56 -11.32 8.65 -308.96 -2.67 -13.99 16 11 C 0.50 17.39 6.87 87.66 0.60 17.99 16 12 O -0.56 -25.33 12.09 15.83 0.19 -25.14 16 13 N -0.60 -18.21 2.97 -795.01 -2.36 -20.57 16 14 C 0.09 1.80 5.50 86.36 0.48 2.27 16 15 C -0.13 -2.22 5.95 30.67 0.18 -2.04 16 16 C -0.12 -2.86 5.88 30.62 0.18 -2.68 16 17 C -0.11 -4.06 4.14 30.67 0.13 -3.94 16 18 C 0.14 5.29 3.21 44.98 0.14 5.44 16 19 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 20 C 0.17 8.46 3.68 86.38 0.32 8.77 16 21 N -0.63 -34.71 2.81 -726.93 -2.04 -36.75 16 22 C 0.19 10.55 8.98 127.77 1.15 11.69 16 23 C -0.23 -13.55 7.70 84.03 0.65 -12.90 16 24 H 0.08 4.22 7.11 -2.91 -0.02 4.20 16 25 C -0.07 -3.98 5.42 84.86 0.46 -3.52 16 26 N -0.95 -58.99 9.53 21.65 0.21 -58.78 16 27 Si 0.97 47.19 29.56 68.60 2.03 49.22 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 30 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 31 H 0.10 1.69 5.52 -2.39 -0.01 1.68 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.55 4.72 -2.39 -0.01 1.54 16 40 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.07 1.21 7.50 -2.39 -0.02 1.19 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.77 6.48 -2.39 -0.02 2.76 16 45 H 0.04 1.65 7.97 -2.38 -0.02 1.63 16 46 H 0.02 1.19 7.21 -2.39 -0.02 1.17 16 47 H 0.05 2.83 5.93 -2.39 -0.01 2.81 16 48 H 0.01 0.50 7.78 -2.39 -0.02 0.48 16 49 H 0.02 1.00 6.90 -2.39 -0.02 0.98 16 50 H 0.02 0.98 7.22 -2.39 -0.02 0.96 16 51 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -80.06 391.55 2.87 -77.19 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.92 Total: 13.83 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 7.26 Total: 25.19 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -6.87 Total: -130.10 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.47 Total: -35.33 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -80.06 2.87 -77.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158751535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.811 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds