Wall clock time and date at job start Wed Apr 1 2020 04:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46833 * 2 1 4 4 O 1.42897 * 109.47076 * 239.99890 * 2 1 3 5 5 C 1.35676 * 116.99846 * 89.99925 * 4 2 1 6 6 C 1.38919 * 119.68320 * 179.72132 * 5 4 2 7 7 C 1.38388 * 119.10784 * 179.71007 * 6 5 4 8 8 C 1.38822 * 118.48407 * 0.55716 * 7 6 5 9 9 C 1.38042 * 119.29155 * 359.72926 * 8 7 6 10 10 N 1.31958 * 120.83671 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.46877 * 119.99889 * 2 1 3 12 12 O 1.21281 * 119.99752 * 111.43592 * 11 2 1 13 13 N 1.34774 * 119.99922 * 291.43314 * 11 2 1 14 14 C 1.46925 * 120.63289 * 5.24283 * 13 11 2 15 15 C 1.53192 * 108.77253 * 233.62929 * 14 13 11 16 16 C 1.53037 * 109.31211 * 305.36123 * 15 14 13 17 17 C 1.53042 * 109.53863 * 61.36762 * 16 15 14 18 18 C 1.46927 * 120.62913 * 185.26102 * 13 11 2 19 19 H 1.08998 * 109.70374 * 246.23151 * 18 13 11 20 20 C 1.53001 * 109.58671 * 6.58141 * 18 13 11 21 21 N 1.46494 * 109.47055 * 178.16727 * 20 18 13 22 22 C 1.46505 * 120.00446 * 264.70442 * 21 20 18 23 23 C 1.36943 * 120.00129 * 84.70602 * 21 20 18 24 24 H 1.07991 * 120.00474 * 217.40236 * 23 21 20 25 25 C 1.38812 * 119.99799 * 37.40138 * 23 21 20 26 26 N 1.31623 * 119.99854 * 28.97997 * 25 23 21 27 27 Si 1.86800 * 119.99896 * 208.98696 * 25 23 21 28 28 H 1.48503 * 109.46821 * 269.99419 * 27 25 23 29 29 H 1.48494 * 109.47082 * 29.99501 * 27 25 23 30 30 H 1.48497 * 109.47291 * 150.00109 * 27 25 23 31 31 H 1.09004 * 109.46760 * 184.13519 * 1 2 3 32 32 H 1.09001 * 109.47366 * 304.13350 * 1 2 3 33 33 H 1.09001 * 109.46918 * 64.13804 * 1 2 3 34 34 H 1.08001 * 120.44944 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.75215 * 180.28742 * 7 6 5 36 36 H 1.08005 * 120.35153 * 179.70724 * 8 7 6 37 37 H 1.08000 * 119.58380 * 180.02562 * 9 8 7 38 38 H 1.08993 * 109.58821 * 113.84121 * 14 13 11 39 39 H 1.09000 * 109.58648 * 353.41310 * 14 13 11 40 40 H 1.08997 * 109.49743 * 185.41081 * 15 14 13 41 41 H 1.09003 * 109.50186 * 65.31690 * 15 14 13 42 42 H 1.09005 * 109.46247 * 301.34210 * 16 15 14 43 43 H 1.09000 * 109.46160 * 181.39034 * 16 15 14 44 44 H 1.09002 * 109.49623 * 178.68336 * 17 16 15 45 45 H 1.08993 * 109.52379 * 58.60127 * 17 16 15 46 46 H 1.08996 * 109.47284 * 58.16904 * 20 18 13 47 47 H 1.09001 * 109.47377 * 298.16875 * 20 18 13 48 48 H 1.08994 * 109.47026 * 265.75832 * 22 21 20 49 49 H 1.08999 * 109.46316 * 25.75215 * 22 21 20 50 50 H 1.08990 * 109.47089 * 145.75611 * 22 21 20 51 51 H 0.96990 * 120.00449 * 3.34838 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2117 0.0829 -2.2741 6 6 2.6797 -0.5139 -3.4380 7 6 2.8792 0.2680 -4.5623 8 6 2.6131 1.6279 -4.4786 9 6 2.1557 2.1546 -3.2874 10 7 1.9695 1.3824 -2.2337 11 6 2.0323 -0.7104 1.2305 12 8 2.5964 -1.7790 1.1260 13 7 1.8548 -0.1582 2.4471 14 6 1.0746 1.0771 2.6019 15 6 1.9231 2.1047 3.3574 16 6 2.4016 1.4941 4.6766 17 6 3.2713 0.2684 4.3876 18 6 2.4382 -0.7799 3.6437 19 1 1.6425 -1.1431 4.2941 20 6 3.3351 -1.9481 3.2292 21 7 3.9497 -2.5385 4.4208 22 6 5.2910 -2.1207 4.8367 23 6 3.2706 -3.4809 5.1460 24 1 3.3483 -3.4928 6.2230 25 6 2.4824 -4.4211 4.4966 26 7 2.7869 -4.8040 3.2746 27 14 0.9895 -5.1427 5.3568 28 1 1.3904 -6.3612 6.1051 29 1 0.4314 -4.1426 6.3020 30 1 -0.0398 -5.4982 4.3473 31 1 -0.3633 -1.0251 0.0741 32 1 -0.3634 0.5766 0.8506 33 1 -0.3633 0.4483 -0.9248 34 1 2.8804 -1.5747 -3.4666 35 1 3.2378 -0.1692 -5.4824 36 1 2.7627 2.2670 -5.3363 37 1 1.9468 3.2119 -3.2172 38 1 0.1662 0.8672 3.1665 39 1 0.8139 1.4702 1.6192 40 1 1.3231 2.9911 3.5633 41 1 2.7853 2.3814 2.7507 42 1 1.5392 1.1951 5.2724 43 1 2.9851 2.2317 5.2277 44 1 3.6309 -0.1521 5.3267 45 1 4.1211 0.5619 3.7714 46 1 4.1152 -1.5873 2.5590 47 1 2.7367 -2.7020 2.7177 48 1 6.0300 -2.8052 4.4206 49 1 5.4857 -1.1114 4.4740 50 1 5.3548 -2.1346 5.9246 51 1 3.5887 -4.4661 2.8461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158751536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:30 Heat of formation + Delta-G solvation = 11.419870 kcal Electronic energy + Delta-G solvation = -32523.525032 eV Core-core repulsion = 28425.173455 eV Total energy + Delta-G solvation = -4098.351577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.94879 -40.10702 -38.14589 -36.78691 -35.62552 -33.20132 -32.65419 -31.99277 -31.30114 -30.42266 -29.83783 -26.89442 -25.37780 -24.87051 -24.19970 -23.67620 -23.02404 -22.17807 -20.68419 -20.26879 -18.81492 -18.57981 -17.29796 -16.94111 -16.30661 -15.95868 -15.80575 -15.61520 -14.86015 -14.60477 -14.44302 -14.31802 -14.04502 -13.78304 -13.52472 -13.49502 -13.39688 -13.14336 -13.10832 -12.89006 -12.62624 -12.49210 -12.22954 -12.14218 -11.77467 -11.46204 -11.20936 -11.10626 -11.00118 -10.95068 -10.64174 -10.62942 -10.36595 -10.14405 -10.09672 -10.04653 -9.97134 -9.78829 -9.27173 -8.74885 -8.50011 -8.17346 -8.06181 -6.56310 -5.86354 -3.17924 0.97307 1.07843 2.61027 2.97989 3.51659 3.56026 3.59782 3.61259 3.75494 4.09003 4.55254 4.64408 4.71557 4.80500 4.83830 4.91675 4.93852 4.99850 5.02963 5.11541 5.12651 5.42479 5.45044 5.48297 5.52693 5.54708 5.59328 5.63670 5.75203 5.76656 5.92404 5.96637 5.99537 6.00591 6.06899 6.18589 6.23474 6.25340 6.40867 6.45675 6.56451 6.63009 6.77624 6.90081 6.96211 7.13357 7.19868 7.65766 7.75242 7.89597 8.27289 8.60509 8.80089 9.34917 10.01748 10.49852 11.32110 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003457 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.425003 B = 8098.538499 C = 9032.048905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.108 0.892 4 O -0.271 6.271 5 C 0.327 3.673 6 C -0.189 4.189 7 C -0.041 4.041 8 C -0.219 4.219 9 C 0.138 3.862 10 N -0.544 5.544 11 C 0.506 3.494 12 O -0.488 6.488 13 N -0.602 5.602 14 C 0.097 3.903 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.131 3.869 19 H 0.073 0.927 20 C 0.147 3.853 21 N -0.600 5.600 22 C 0.122 3.878 23 C -0.369 4.369 24 H 0.046 0.954 25 C -0.014 4.014 26 N -0.889 5.889 27 Si 1.059 2.941 28 H -0.294 1.294 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.112 0.888 48 H -0.001 1.001 49 H 0.025 0.975 50 H 0.028 0.972 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 18.932 -12.096 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.176 6.176 5 C 0.148 3.852 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.239 4.239 9 C -0.017 4.017 10 N -0.268 5.268 11 C 0.291 3.709 12 O -0.360 6.360 13 N -0.338 5.338 14 C -0.026 4.026 15 C -0.171 4.171 16 C -0.158 4.158 17 C -0.158 4.158 18 C 0.027 3.973 19 H 0.091 0.909 20 C 0.021 3.979 21 N -0.325 5.325 22 C -0.023 4.023 23 C -0.498 4.498 24 H 0.064 0.936 25 C -0.220 4.220 26 N -0.526 5.526 27 Si 0.889 3.111 28 H -0.221 1.221 29 H -0.219 1.219 30 H -0.212 1.212 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.129 0.871 48 H 0.017 0.983 49 H 0.044 0.956 50 H 0.047 0.953 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.307 17.323 -11.499 21.459 hybrid contribution 1.556 1.098 -0.358 1.938 sum -3.751 18.421 -11.857 22.226 Atomic orbital electron populations 1.22336 0.92785 1.04098 1.03535 1.22163 0.95653 0.97650 0.83213 0.87442 1.86439 1.79419 1.34235 1.17556 1.19973 0.90617 0.87293 0.87268 1.21158 1.05849 1.02514 0.91411 1.21416 0.94144 0.93432 0.97618 1.21946 1.05815 0.96209 0.99970 1.22392 0.92803 0.99113 0.87412 1.67276 1.22161 1.04807 1.32567 1.20113 0.80779 0.86137 0.83846 1.90897 1.40356 1.19802 1.84966 1.48194 1.53100 1.25831 1.06722 1.21952 0.94502 0.85063 1.01071 1.21909 1.00056 0.97659 0.97467 1.21552 1.00043 0.97751 0.96442 1.21922 0.97764 0.94789 1.01336 1.22301 0.96710 0.93911 0.84405 0.90895 1.21712 0.94938 0.93760 0.87524 1.44053 1.12236 1.44659 1.31510 1.21123 0.88118 0.95681 0.97425 1.19698 1.29386 1.10346 0.90364 0.93595 1.25873 1.03503 0.94378 0.98233 1.70682 1.27783 1.38143 1.15997 0.83652 0.76779 0.75565 0.75089 1.22129 1.21888 1.21249 0.90937 0.89873 0.91172 0.83799 0.84199 0.84707 0.82504 0.91200 0.89757 0.91158 0.91785 0.91898 0.92330 0.90084 0.92853 0.95018 0.87071 0.98276 0.95609 0.95326 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.11 37.16 0.34 -1.82 16 2 C 0.07 1.13 2.07 -27.88 -0.06 1.07 16 3 H 0.11 1.50 6.33 -51.93 -0.33 1.17 16 4 O -0.27 -4.61 9.31 -38.49 -0.36 -4.97 16 5 C 0.33 4.63 7.45 -17.12 -0.13 4.50 16 6 C -0.19 -2.24 10.04 -39.27 -0.39 -2.63 16 7 C -0.04 -0.36 10.17 -39.31 -0.40 -0.76 16 8 C -0.22 -1.73 10.10 -39.44 -0.40 -2.13 16 9 C 0.14 1.27 11.17 -17.57 -0.20 1.07 16 10 N -0.54 -6.74 8.65 -13.33 -0.12 -6.86 16 11 C 0.51 9.79 6.94 -10.99 -0.08 9.72 16 12 O -0.49 -11.98 12.07 -14.21 -0.17 -12.15 16 13 N -0.60 -10.53 2.97 -165.23 -0.49 -11.02 16 14 C 0.10 1.21 5.25 -3.71 -0.02 1.20 16 15 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 16 C -0.12 -1.60 5.88 -26.69 -0.16 -1.75 16 17 C -0.12 -2.08 4.11 -26.61 -0.11 -2.19 16 18 C 0.13 2.70 3.18 -67.60 -0.22 2.48 16 19 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 20 C 0.15 3.72 2.89 -4.04 -0.01 3.70 16 21 N -0.60 -15.96 2.20 -181.13 -0.40 -16.36 16 22 C 0.12 2.82 9.61 59.85 0.58 3.40 16 23 C -0.37 -10.73 9.34 -15.06 -0.14 -10.87 16 24 H 0.05 1.35 7.98 -52.49 -0.42 0.93 16 25 C -0.01 -0.42 4.80 -17.43 -0.08 -0.50 16 26 N -0.89 -28.31 12.34 55.49 0.68 -27.62 16 27 Si 1.06 26.31 30.01 -169.99 -5.10 21.21 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.87 5.46 -51.93 -0.28 0.59 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.88 4.41 -51.93 -0.23 0.65 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.54 6.94 -51.93 -0.36 1.18 16 45 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 46 H 0.03 0.82 7.12 -51.93 -0.37 0.45 16 47 H 0.11 3.26 3.69 -51.93 -0.19 3.07 16 48 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 49 H 0.03 0.52 6.81 -51.93 -0.35 0.17 16 50 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 51 H 0.27 9.07 7.32 -40.82 -0.30 8.77 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -35.88 394.61 -9.60 -45.47 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.96 Total: 3.52 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.64 Total: 2.83 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.32 Total: -61.86 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.53 Total: -17.12 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.10 Total: 21.21 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.88 -9.60 -45.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158751536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.893 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds