Wall clock time and date at job start Wed Apr 1 2020 04:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46833 * 2 1 4 4 O 1.42897 * 109.47076 * 239.99890 * 2 1 3 5 5 C 1.35676 * 116.99846 * 89.99925 * 4 2 1 6 6 C 1.38919 * 119.68320 * 179.72132 * 5 4 2 7 7 C 1.38388 * 119.10784 * 179.71007 * 6 5 4 8 8 C 1.38822 * 118.48407 * 0.55716 * 7 6 5 9 9 C 1.38042 * 119.29155 * 359.72926 * 8 7 6 10 10 N 1.31958 * 120.83671 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.46877 * 119.99889 * 2 1 3 12 12 O 1.21281 * 119.99752 * 111.43592 * 11 2 1 13 13 N 1.34774 * 119.99922 * 291.43314 * 11 2 1 14 14 C 1.46925 * 120.63289 * 5.24283 * 13 11 2 15 15 C 1.53192 * 108.77253 * 233.62929 * 14 13 11 16 16 C 1.53037 * 109.31211 * 305.36123 * 15 14 13 17 17 C 1.53042 * 109.53863 * 61.36762 * 16 15 14 18 18 C 1.46927 * 120.62913 * 185.26102 * 13 11 2 19 19 H 1.08998 * 109.70374 * 246.23151 * 18 13 11 20 20 C 1.53001 * 109.58671 * 6.58141 * 18 13 11 21 21 N 1.46494 * 109.47055 * 178.16727 * 20 18 13 22 22 C 1.46505 * 120.00446 * 264.70442 * 21 20 18 23 23 C 1.36943 * 120.00129 * 84.70602 * 21 20 18 24 24 H 1.07991 * 120.00474 * 217.40236 * 23 21 20 25 25 C 1.38812 * 119.99799 * 37.40138 * 23 21 20 26 26 N 1.31623 * 119.99854 * 28.97997 * 25 23 21 27 27 Si 1.86800 * 119.99896 * 208.98696 * 25 23 21 28 28 H 1.48503 * 109.46821 * 269.99419 * 27 25 23 29 29 H 1.48494 * 109.47082 * 29.99501 * 27 25 23 30 30 H 1.48497 * 109.47291 * 150.00109 * 27 25 23 31 31 H 1.09004 * 109.46760 * 184.13519 * 1 2 3 32 32 H 1.09001 * 109.47366 * 304.13350 * 1 2 3 33 33 H 1.09001 * 109.46918 * 64.13804 * 1 2 3 34 34 H 1.08001 * 120.44944 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.75215 * 180.28742 * 7 6 5 36 36 H 1.08005 * 120.35153 * 179.70724 * 8 7 6 37 37 H 1.08000 * 119.58380 * 180.02562 * 9 8 7 38 38 H 1.08993 * 109.58821 * 113.84121 * 14 13 11 39 39 H 1.09000 * 109.58648 * 353.41310 * 14 13 11 40 40 H 1.08997 * 109.49743 * 185.41081 * 15 14 13 41 41 H 1.09003 * 109.50186 * 65.31690 * 15 14 13 42 42 H 1.09005 * 109.46247 * 301.34210 * 16 15 14 43 43 H 1.09000 * 109.46160 * 181.39034 * 16 15 14 44 44 H 1.09002 * 109.49623 * 178.68336 * 17 16 15 45 45 H 1.08993 * 109.52379 * 58.60127 * 17 16 15 46 46 H 1.08996 * 109.47284 * 58.16904 * 20 18 13 47 47 H 1.09001 * 109.47377 * 298.16875 * 20 18 13 48 48 H 1.08994 * 109.47026 * 265.75832 * 22 21 20 49 49 H 1.08999 * 109.46316 * 25.75215 * 22 21 20 50 50 H 1.08990 * 109.47089 * 145.75611 * 22 21 20 51 51 H 0.96990 * 120.00449 * 3.34838 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2117 0.0829 -2.2741 6 6 2.6797 -0.5139 -3.4380 7 6 2.8792 0.2680 -4.5623 8 6 2.6131 1.6279 -4.4786 9 6 2.1557 2.1546 -3.2874 10 7 1.9695 1.3824 -2.2337 11 6 2.0323 -0.7104 1.2305 12 8 2.5964 -1.7790 1.1260 13 7 1.8548 -0.1582 2.4471 14 6 1.0746 1.0771 2.6019 15 6 1.9231 2.1047 3.3574 16 6 2.4016 1.4941 4.6766 17 6 3.2713 0.2684 4.3876 18 6 2.4382 -0.7799 3.6437 19 1 1.6425 -1.1431 4.2941 20 6 3.3351 -1.9481 3.2292 21 7 3.9497 -2.5385 4.4208 22 6 5.2910 -2.1207 4.8367 23 6 3.2706 -3.4809 5.1460 24 1 3.3483 -3.4928 6.2230 25 6 2.4824 -4.4211 4.4966 26 7 2.7869 -4.8040 3.2746 27 14 0.9895 -5.1427 5.3568 28 1 1.3904 -6.3612 6.1051 29 1 0.4314 -4.1426 6.3020 30 1 -0.0398 -5.4982 4.3473 31 1 -0.3633 -1.0251 0.0741 32 1 -0.3634 0.5766 0.8506 33 1 -0.3633 0.4483 -0.9248 34 1 2.8804 -1.5747 -3.4666 35 1 3.2378 -0.1692 -5.4824 36 1 2.7627 2.2670 -5.3363 37 1 1.9468 3.2119 -3.2172 38 1 0.1662 0.8672 3.1665 39 1 0.8139 1.4702 1.6192 40 1 1.3231 2.9911 3.5633 41 1 2.7853 2.3814 2.7507 42 1 1.5392 1.1951 5.2724 43 1 2.9851 2.2317 5.2277 44 1 3.6309 -0.1521 5.3267 45 1 4.1211 0.5619 3.7714 46 1 4.1152 -1.5873 2.5590 47 1 2.7367 -2.7020 2.7177 48 1 6.0300 -2.8052 4.4206 49 1 5.4857 -1.1114 4.4740 50 1 5.3548 -2.1346 5.9246 51 1 3.5887 -4.4661 2.8461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158751536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:29 Heat of formation + Delta-G solvation = -12.356036 kcal Electronic energy + Delta-G solvation = -32524.556033 eV Core-core repulsion = 28425.173455 eV Total energy + Delta-G solvation = -4099.382578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09505 -41.29556 -39.26910 -38.20784 -37.53885 -34.56962 -33.53489 -33.44880 -32.97108 -31.80726 -30.85416 -28.49963 -27.36547 -26.38259 -25.31744 -24.54125 -24.17547 -23.57917 -22.39226 -21.62939 -20.18048 -19.64747 -19.28192 -18.11308 -17.45184 -17.22886 -16.85618 -16.74648 -16.23151 -15.93815 -15.79497 -15.55472 -15.52566 -15.48226 -15.20111 -14.93596 -14.57671 -14.35384 -14.30444 -14.08139 -14.00827 -13.86727 -13.46492 -13.21516 -13.08796 -12.85147 -12.83425 -12.70747 -12.63796 -12.40016 -12.20869 -11.94938 -11.91544 -11.84787 -11.63229 -11.45300 -11.37312 -10.91872 -10.61376 -10.42057 -10.24678 -9.57918 -9.49622 -8.82498 -8.14701 -5.50960 0.19411 0.31045 1.42629 1.51297 1.52025 1.61419 1.78598 2.32569 2.64318 2.81672 3.20046 3.25283 3.34872 3.68124 3.79781 3.83437 3.91846 3.93756 3.98783 4.03764 4.10812 4.11261 4.21642 4.31968 4.34448 4.40990 4.53777 4.55123 4.58792 4.61899 4.69219 4.77203 4.80024 4.84676 4.90003 4.97460 5.00826 5.04245 5.06685 5.10558 5.20420 5.23295 5.28157 5.43962 5.47571 5.55562 5.82917 5.92699 6.18048 6.34958 6.42569 6.84325 7.06691 7.21954 7.80465 8.26495 8.93670 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003457 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.425003 B = 8098.538499 C = 9032.048905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.086 3.914 3 H 0.126 0.874 4 O -0.310 6.310 5 C 0.292 3.708 6 C -0.213 4.213 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.130 3.870 10 N -0.556 5.556 11 C 0.494 3.506 12 O -0.555 6.555 13 N -0.599 5.599 14 C 0.087 3.913 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.110 4.110 18 C 0.140 3.860 19 H 0.049 0.951 20 C 0.160 3.840 21 N -0.617 5.617 22 C 0.125 3.875 23 C -0.370 4.370 24 H 0.044 0.956 25 C -0.067 4.067 26 N -0.918 5.918 27 Si 1.111 2.889 28 H -0.278 1.278 29 H -0.268 1.268 30 H -0.294 1.294 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.010 0.990 47 H 0.072 0.928 48 H -0.016 1.016 49 H 0.050 0.950 50 H 0.040 0.960 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 23.327 -12.574 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.143 0.857 4 O -0.217 6.217 5 C 0.115 3.885 6 C -0.234 4.234 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.025 4.025 10 N -0.280 5.280 11 C 0.281 3.719 12 O -0.433 6.433 13 N -0.334 5.334 14 C -0.034 4.034 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.148 4.148 18 C 0.035 3.965 19 H 0.067 0.933 20 C 0.034 3.966 21 N -0.343 5.343 22 C -0.020 4.020 23 C -0.499 4.499 24 H 0.062 0.938 25 C -0.266 4.266 26 N -0.557 5.557 27 Si 0.934 3.066 28 H -0.204 1.204 29 H -0.193 1.193 30 H -0.220 1.220 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.189 0.811 36 H 0.193 0.807 37 H 0.210 0.790 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.028 0.972 47 H 0.090 0.910 48 H 0.003 0.997 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.908 21.800 -11.962 25.808 hybrid contribution 2.156 -0.170 -0.347 2.191 sum -4.752 21.630 -12.309 25.336 Atomic orbital electron populations 1.22312 0.90687 1.03274 1.05483 1.22071 0.96920 0.97151 0.81193 0.85692 1.86386 1.80512 1.36097 1.18701 1.20189 0.93119 0.88293 0.86941 1.21343 1.07052 1.02698 0.92271 1.21839 0.92927 0.93888 0.97456 1.22428 1.03124 0.96014 1.00690 1.23125 0.91957 1.00395 0.87065 1.67233 1.22598 1.04030 1.34144 1.21022 0.79748 0.85590 0.85501 1.90878 1.43443 1.22843 1.86097 1.48249 1.52872 1.27065 1.05204 1.22401 0.94620 0.83048 1.03288 1.21914 1.00368 0.98251 0.95787 1.21538 0.99572 0.96052 0.98069 1.21781 0.97811 0.95660 0.99565 1.21770 0.95555 0.93743 0.85408 0.93272 1.21343 0.94360 0.94556 0.86328 1.44303 1.13644 1.44890 1.31443 1.21158 0.86234 0.96582 0.98021 1.19922 1.29223 1.10342 0.90458 0.93810 1.27381 1.06132 0.95002 0.98134 1.70840 1.27307 1.40002 1.17511 0.82990 0.73164 0.76020 0.74420 1.20377 1.19270 1.21990 0.93274 0.87217 0.89589 0.84905 0.81100 0.80748 0.78955 0.89653 0.87131 0.86947 0.91903 0.91592 0.89973 0.91900 0.93405 0.97172 0.91034 0.99736 0.93135 0.94126 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.11 71.98 0.66 -3.32 16 2 C 0.09 2.72 2.07 29.85 0.06 2.78 16 3 H 0.13 3.38 6.33 -2.39 -0.02 3.37 16 4 O -0.31 -11.27 9.31 -71.04 -0.66 -11.93 16 5 C 0.29 8.48 7.45 84.79 0.63 9.11 16 6 C -0.21 -5.21 10.04 22.47 0.23 -4.98 16 7 C -0.04 -0.56 10.17 22.45 0.23 -0.33 16 8 C -0.20 -2.45 10.10 22.36 0.23 -2.22 16 9 C 0.13 1.97 11.17 84.63 0.95 2.91 16 10 N -0.56 -13.01 8.65 -308.96 -2.67 -15.68 16 11 C 0.49 20.19 6.94 87.66 0.61 20.80 16 12 O -0.56 -29.95 12.07 15.86 0.19 -29.75 16 13 N -0.60 -21.23 2.97 -795.05 -2.36 -23.60 16 14 C 0.09 1.94 5.25 86.36 0.45 2.40 16 15 C -0.13 -2.33 6.08 30.67 0.19 -2.14 16 16 C -0.11 -2.71 5.88 30.62 0.18 -2.53 16 17 C -0.11 -3.78 4.11 30.67 0.13 -3.65 16 18 C 0.14 5.99 3.18 44.97 0.14 6.13 16 19 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 20 C 0.16 8.66 2.89 86.38 0.25 8.91 16 21 N -0.62 -34.47 2.20 -726.97 -1.60 -36.07 16 22 C 0.12 5.98 9.61 127.77 1.23 7.21 16 23 C -0.37 -22.29 9.34 84.03 0.78 -21.51 16 24 H 0.04 2.63 7.98 -2.92 -0.02 2.60 16 25 C -0.07 -4.15 4.80 84.86 0.41 -3.75 16 26 N -0.92 -62.05 12.34 21.65 0.27 -61.79 16 27 Si 1.11 54.38 30.01 68.60 2.06 56.44 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 30 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 32 H 0.11 2.04 5.46 -2.39 -0.01 2.02 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.90 4.41 -2.39 -0.01 1.89 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.38 6.94 -2.39 -0.02 2.36 16 45 H 0.05 1.68 7.90 -2.39 -0.02 1.66 16 46 H 0.01 0.56 7.12 -2.39 -0.02 0.55 16 47 H 0.07 4.56 3.69 -2.39 -0.01 4.55 16 48 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 49 H 0.05 2.12 6.81 -2.39 -0.02 2.10 16 50 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 51 H 0.25 17.85 7.32 -92.72 -0.68 17.18 16 Total: -1.00 -88.33 394.61 3.58 -84.75 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.01 Total: 21.81 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 7.34 Total: 15.82 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -6.37 Total: -137.14 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.47 Total: -41.68 kcal Atomic # 14 Polarization: 54.38 SS G_CDS: 2.06 Total: 56.44 kcal Total: -88.33 3.58 -84.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158751536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.395 kcal (2) G-P(sol) polarization free energy of solvation -88.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds