Wall clock time and date at job start Wed Apr 1 2020 05:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 119.99689 * 2 1 4 4 N 1.34772 * 119.99957 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99821 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.46840 * 325.00746 * 5 4 2 7 7 C 1.53002 * 109.46847 * 85.00042 * 5 4 2 8 8 C 1.50696 * 109.47374 * 205.00055 * 5 4 2 9 9 O 1.21280 * 120.00095 * 340.00483 * 8 5 4 10 10 N 1.34771 * 119.99966 * 160.00034 * 8 5 4 11 11 C 1.46506 * 120.00084 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47035 * 270.00167 * 11 10 8 13 13 N 1.46496 * 109.47030 * 180.02562 * 12 11 10 14 14 C 1.36943 * 119.99943 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99502 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47513 * 60.00247 * 18 16 14 20 20 H 1.48505 * 109.47234 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47012 * 299.99958 * 18 16 14 22 22 C 1.46496 * 120.00157 * 359.97438 * 10 8 5 23 23 C 1.52998 * 109.47337 * 270.00189 * 22 10 8 24 24 C 1.50700 * 109.47076 * 180.02562 * 23 22 10 25 25 C 1.38238 * 120.00036 * 269.72312 * 24 23 22 26 26 C 1.38235 * 120.00247 * 179.76652 * 25 24 23 27 27 C 1.38238 * 119.99728 * 0.50741 * 26 25 24 28 28 C 1.38234 * 120.00060 * 359.75112 * 27 26 25 29 29 C 1.38238 * 120.00071 * 90.00185 * 24 23 22 30 30 H 1.09004 * 109.46606 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47629 * 300.00013 * 1 2 3 32 32 H 1.08999 * 109.46959 * 60.00562 * 1 2 3 33 33 H 0.97000 * 120.00583 * 0.02562 * 4 2 1 34 34 H 1.08994 * 109.47069 * 60.00240 * 7 5 4 35 35 H 1.09000 * 109.46872 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47377 * 300.00175 * 7 5 4 37 37 H 1.09004 * 109.47073 * 29.99849 * 11 10 8 38 38 H 1.09000 * 109.47212 * 149.99932 * 11 10 8 39 39 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 40 40 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 41 41 H 0.96999 * 120.00085 * 359.97438 * 13 12 11 42 42 H 0.97000 * 119.99481 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.47057 * 30.00532 * 22 10 8 44 44 H 1.08999 * 109.47333 * 150.00092 * 22 10 8 45 45 H 1.08998 * 109.47036 * 299.99480 * 23 22 10 46 46 H 1.08992 * 109.47282 * 59.99942 * 23 22 10 47 47 H 1.07999 * 119.99431 * 0.02562 * 25 24 23 48 48 H 1.07991 * 120.00327 * 180.22944 * 26 25 24 49 49 H 1.08002 * 119.99860 * 179.71946 * 27 26 25 50 50 H 1.07997 * 119.99997 * 179.97438 * 28 27 26 51 51 H 1.07991 * 119.99858 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0094 -0.3254 -0.5883 7 6 4.1553 -1.0411 1.4383 8 6 4.1486 -2.4549 -0.5989 9 8 3.4202 -3.4231 -0.6541 10 7 5.4074 -2.5307 -1.0741 11 6 5.8959 -3.7824 -1.6579 12 6 6.5305 -4.6423 -0.5630 13 7 7.0195 -5.8937 -1.1469 14 6 7.6294 -6.8276 -0.3524 15 1 7.7501 -6.6413 0.7046 16 6 8.0923 -8.0136 -0.9054 17 7 7.9455 -8.2403 -2.1937 18 14 8.9247 -9.2872 0.1782 19 1 7.9817 -9.7292 1.2366 20 1 9.3248 -10.4546 -0.6479 21 1 10.1302 -8.6901 0.8071 22 6 6.2870 -1.3610 -1.0080 23 6 6.1285 -0.5309 -2.2834 24 6 7.0338 0.6720 -2.2156 25 6 6.5713 1.8553 -1.6708 26 6 7.4033 2.9573 -1.6041 27 6 8.6944 2.8790 -2.0919 28 6 9.1551 1.6973 -2.6415 29 6 8.3249 0.5938 -2.7034 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6959 -2.0073 0.0005 34 1 3.7918 -1.8828 2.0277 35 1 5.2453 -1.0406 1.4387 36 1 3.7917 -0.1096 1.8723 37 1 5.0630 -4.3231 -2.1075 38 1 6.6402 -3.5605 -2.4228 39 1 7.3635 -4.1017 -0.1134 40 1 5.7862 -4.8641 0.2019 41 1 6.9107 -6.0612 -2.0961 42 1 8.2687 -9.0693 -2.5801 43 1 6.0194 -0.7535 -0.1434 44 1 7.3221 -1.6896 -0.9147 45 1 6.3963 -1.1383 -3.1479 46 1 5.0935 -0.2023 -2.3767 47 1 5.5613 1.9176 -1.2934 48 1 7.0432 3.8806 -1.1752 49 1 9.3429 3.7413 -2.0440 50 1 10.1637 1.6363 -3.0229 51 1 8.6848 -0.3295 -3.1327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162681746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:00 Heat of formation + Delta-G solvation = -39.322028 kcal Electronic energy + Delta-G solvation = -30697.608135 eV Core-core repulsion = 26597.056224 eV Total energy + Delta-G solvation = -4100.551911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74368 -39.56162 -39.17603 -36.47422 -35.31490 -34.62737 -33.07177 -31.97998 -31.13351 -31.04967 -29.23323 -28.80636 -27.54696 -24.92902 -24.10892 -23.17047 -22.74541 -21.61837 -21.18406 -20.62007 -19.35531 -17.76716 -17.31813 -16.97571 -16.84830 -16.29177 -15.77152 -15.51677 -15.38053 -15.15016 -14.96853 -14.52264 -14.11849 -13.97955 -13.76110 -13.57807 -13.53600 -13.32715 -13.27340 -13.10710 -12.99749 -12.78227 -12.76767 -12.42467 -12.38881 -12.19033 -11.86269 -11.42818 -11.35715 -11.18677 -11.00329 -10.97149 -10.90664 -10.69080 -10.18288 -10.16078 -9.90137 -9.73136 -9.36869 -9.08930 -9.05522 -8.88112 -8.54577 -6.94872 -5.77198 -3.06637 1.14994 1.23304 2.33627 2.49997 2.65521 3.19018 3.44320 3.48469 3.49742 3.60973 4.16146 4.54403 4.56898 4.60846 4.68675 4.81426 4.84069 4.85392 4.86378 4.93146 4.98382 5.02120 5.12362 5.19701 5.31136 5.33677 5.39095 5.43563 5.50446 5.55831 5.58189 5.62536 5.68762 5.79282 5.88733 5.89820 5.96026 5.99685 6.07870 6.10952 6.29547 6.34714 6.43538 6.48594 6.69233 6.83179 6.84800 7.26434 7.33117 7.68746 7.94571 8.06342 8.41262 9.52195 10.07813 10.42788 11.45601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007410 B = 0.003061 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.758874 B = 9145.556092 C =12268.183842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.551 6.551 4 N -0.713 5.713 5 C 0.122 3.878 6 H 0.110 0.890 7 C -0.161 4.161 8 C 0.510 3.490 9 O -0.528 6.528 10 N -0.599 5.599 11 C 0.107 3.893 12 C 0.144 3.856 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.105 3.895 23 C -0.101 4.101 24 C -0.080 4.080 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.113 4.113 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.018 0.982 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 24.360 1.475 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.429 6.429 4 N -0.368 5.368 5 C 0.014 3.986 6 H 0.128 0.872 7 C -0.219 4.219 8 C 0.297 3.703 9 O -0.404 6.404 10 N -0.331 5.331 11 C -0.015 4.015 12 C 0.015 3.985 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.018 4.018 23 C -0.140 4.140 24 C -0.081 4.081 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.131 4.131 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.887 24.465 1.573 25.753 hybrid contribution 0.373 -1.187 0.224 1.264 sum -7.514 23.278 1.797 24.527 Atomic orbital electron populations 1.21838 0.91306 1.04530 1.05308 1.20836 0.90727 0.83154 0.75154 1.90710 1.70719 1.31327 1.50101 1.45995 1.05900 1.09848 1.75068 1.20842 0.82055 0.97060 0.98693 0.87244 1.22156 1.01996 1.03573 0.94194 1.20511 0.82041 0.89589 0.78190 1.90727 1.55615 1.38007 1.56059 1.47849 1.12125 1.12841 1.60269 1.21771 0.99794 0.83448 0.96504 1.20895 0.95509 0.87793 0.94299 1.42190 1.70624 1.15730 1.08914 1.19152 1.29862 0.96279 0.91750 0.91265 1.24742 1.01877 0.98254 0.96009 1.69652 1.52143 1.26187 1.10219 0.86243 0.79337 0.81124 0.79339 1.21225 1.21630 1.21243 1.21810 0.95967 0.86440 0.97590 1.21072 0.99109 0.94348 0.99422 1.19751 0.94691 0.94834 0.98801 1.21131 1.00020 0.92676 0.99438 1.21144 0.94133 0.98565 0.99884 1.21162 0.96079 0.97939 0.99143 1.21166 0.99753 0.93195 0.99586 1.21142 0.93418 0.98849 0.99684 0.90327 0.88629 0.88628 0.75079 0.91336 0.90630 0.90752 0.89550 0.90240 0.96380 0.95958 0.78259 0.93416 0.89757 0.89063 0.89979 0.90761 0.85870 0.86155 0.86299 0.86072 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.39 36.01 0.37 -0.68 16 2 C 0.51 5.24 7.90 -10.99 -0.09 5.15 16 3 O -0.55 -7.45 16.76 5.56 0.09 -7.35 16 4 N -0.71 -7.37 5.04 -54.93 -0.28 -7.64 16 5 C 0.12 1.36 2.13 -69.08 -0.15 1.21 16 6 H 0.11 1.19 5.56 -51.93 -0.29 0.91 16 7 C -0.16 -1.62 9.20 37.16 0.34 -1.28 16 8 C 0.51 7.12 6.92 -10.99 -0.08 7.04 16 9 O -0.53 -9.20 15.50 5.56 0.09 -9.11 16 10 N -0.60 -7.95 2.47 -173.69 -0.43 -8.38 16 11 C 0.11 1.75 5.52 -4.04 -0.02 1.73 16 12 C 0.14 2.95 6.58 -4.04 -0.03 2.92 16 13 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 14 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 18 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.11 1.09 4.98 -4.04 -0.02 1.07 16 23 C -0.10 -0.97 5.53 -27.88 -0.15 -1.12 16 24 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 25 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 27 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 28 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 29 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 30 H 0.08 0.36 7.91 -51.93 -0.41 -0.05 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.41 4.05 7.57 -40.82 -0.31 3.74 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.57 7.42 -51.93 -0.39 1.19 16 38 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.38 10.24 7.67 -40.82 -0.31 9.92 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.08 0.77 4.76 -51.93 -0.25 0.53 16 44 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 45 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 46 H 0.07 0.72 7.10 -51.93 -0.37 0.35 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 422.49 15.07 6.37 6.37 Total: -1.00 -35.06 422.49 -9.46 -44.52 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -8.11 Total: 10.74 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.56 Total: 0.01 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.32 Total: -62.74 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.18 Total: -16.46 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.06 -9.46 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162681746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.203 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds