Wall clock time and date at job start Wed Apr 1 2020 04:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 119.99689 * 2 1 4 4 N 1.34772 * 119.99957 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99821 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.46840 * 325.00746 * 5 4 2 7 7 C 1.53002 * 109.46847 * 85.00042 * 5 4 2 8 8 C 1.50696 * 109.47374 * 205.00055 * 5 4 2 9 9 O 1.21280 * 120.00095 * 340.00483 * 8 5 4 10 10 N 1.34771 * 119.99966 * 160.00034 * 8 5 4 11 11 C 1.46506 * 120.00084 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47035 * 270.00167 * 11 10 8 13 13 N 1.46496 * 109.47030 * 180.02562 * 12 11 10 14 14 C 1.36943 * 119.99943 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99502 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99705 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47513 * 60.00247 * 18 16 14 20 20 H 1.48505 * 109.47234 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47012 * 299.99958 * 18 16 14 22 22 C 1.46496 * 120.00157 * 359.97438 * 10 8 5 23 23 C 1.52998 * 109.47337 * 270.00189 * 22 10 8 24 24 C 1.50700 * 109.47076 * 180.02562 * 23 22 10 25 25 C 1.38238 * 120.00036 * 269.72312 * 24 23 22 26 26 C 1.38235 * 120.00247 * 179.76652 * 25 24 23 27 27 C 1.38238 * 119.99728 * 0.50741 * 26 25 24 28 28 C 1.38234 * 120.00060 * 359.75112 * 27 26 25 29 29 C 1.38238 * 120.00071 * 90.00185 * 24 23 22 30 30 H 1.09004 * 109.46606 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47629 * 300.00013 * 1 2 3 32 32 H 1.08999 * 109.46959 * 60.00562 * 1 2 3 33 33 H 0.97000 * 120.00583 * 0.02562 * 4 2 1 34 34 H 1.08994 * 109.47069 * 60.00240 * 7 5 4 35 35 H 1.09000 * 109.46872 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47377 * 300.00175 * 7 5 4 37 37 H 1.09004 * 109.47073 * 29.99849 * 11 10 8 38 38 H 1.09000 * 109.47212 * 149.99932 * 11 10 8 39 39 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 40 40 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 41 41 H 0.96999 * 120.00085 * 359.97438 * 13 12 11 42 42 H 0.97000 * 119.99481 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.47057 * 30.00532 * 22 10 8 44 44 H 1.08999 * 109.47333 * 150.00092 * 22 10 8 45 45 H 1.08998 * 109.47036 * 299.99480 * 23 22 10 46 46 H 1.08992 * 109.47282 * 59.99942 * 23 22 10 47 47 H 1.07999 * 119.99431 * 0.02562 * 25 24 23 48 48 H 1.07991 * 120.00327 * 180.22944 * 26 25 24 49 49 H 1.08002 * 119.99860 * 179.71946 * 27 26 25 50 50 H 1.07997 * 119.99997 * 179.97438 * 28 27 26 51 51 H 1.07991 * 119.99858 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0094 -0.3254 -0.5883 7 6 4.1553 -1.0411 1.4383 8 6 4.1486 -2.4549 -0.5989 9 8 3.4202 -3.4231 -0.6541 10 7 5.4074 -2.5307 -1.0741 11 6 5.8959 -3.7824 -1.6579 12 6 6.5305 -4.6423 -0.5630 13 7 7.0195 -5.8937 -1.1469 14 6 7.6294 -6.8276 -0.3524 15 1 7.7501 -6.6413 0.7046 16 6 8.0923 -8.0136 -0.9054 17 7 7.9455 -8.2403 -2.1937 18 14 8.9247 -9.2872 0.1782 19 1 7.9817 -9.7292 1.2366 20 1 9.3248 -10.4546 -0.6479 21 1 10.1302 -8.6901 0.8071 22 6 6.2870 -1.3610 -1.0080 23 6 6.1285 -0.5309 -2.2834 24 6 7.0338 0.6720 -2.2156 25 6 6.5713 1.8553 -1.6708 26 6 7.4033 2.9573 -1.6041 27 6 8.6944 2.8790 -2.0919 28 6 9.1551 1.6973 -2.6415 29 6 8.3249 0.5938 -2.7034 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6959 -2.0073 0.0005 34 1 3.7918 -1.8828 2.0277 35 1 5.2453 -1.0406 1.4387 36 1 3.7917 -0.1096 1.8723 37 1 5.0630 -4.3231 -2.1075 38 1 6.6402 -3.5605 -2.4228 39 1 7.3635 -4.1017 -0.1134 40 1 5.7862 -4.8641 0.2019 41 1 6.9107 -6.0612 -2.0961 42 1 8.2687 -9.0693 -2.5801 43 1 6.0194 -0.7535 -0.1434 44 1 7.3221 -1.6896 -0.9147 45 1 6.3963 -1.1383 -3.1479 46 1 5.0935 -0.2023 -2.3767 47 1 5.5613 1.9176 -1.2934 48 1 7.0432 3.8806 -1.1752 49 1 9.3429 3.7413 -2.0440 50 1 10.1637 1.6363 -3.0229 51 1 8.6848 -0.3295 -3.1327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162681746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:59 Heat of formation + Delta-G solvation = -61.562351 kcal Electronic energy + Delta-G solvation = -30698.572547 eV Core-core repulsion = 26597.056224 eV Total energy + Delta-G solvation = -4101.516324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77749 -40.37372 -40.01856 -37.70931 -36.59881 -36.02788 -34.19413 -33.25617 -32.48961 -31.72141 -30.22374 -29.67733 -28.84622 -26.24922 -25.36412 -24.43361 -23.43142 -23.19592 -21.92370 -21.47780 -20.48819 -19.23364 -18.65570 -18.05628 -17.66397 -17.24753 -16.96245 -16.51642 -16.28908 -16.12924 -16.06315 -15.83623 -15.37022 -15.19764 -15.11062 -14.84922 -14.68626 -14.35308 -14.29463 -14.09241 -13.78001 -13.75620 -13.44526 -13.23728 -13.16458 -13.06572 -13.00439 -12.87193 -12.74407 -12.71018 -12.36757 -12.18851 -12.14287 -11.89912 -11.86481 -11.70313 -11.07023 -10.98282 -10.95002 -10.28131 -10.03237 -9.77708 -9.48121 -9.06594 -7.97977 -5.28530 0.45443 0.54490 1.34220 1.45977 1.49760 1.54280 1.56888 1.66397 2.30305 2.55493 2.90813 3.17361 3.35553 3.74777 3.82631 3.92731 3.96652 4.02908 4.03892 4.09625 4.11966 4.16539 4.22679 4.32567 4.35002 4.41161 4.48876 4.51559 4.58735 4.61794 4.66861 4.67599 4.69438 4.85501 4.93535 5.00539 5.06810 5.07973 5.10973 5.20862 5.22205 5.28177 5.38087 5.47294 5.62711 5.67918 5.74458 6.16206 6.20865 6.23616 6.46959 6.91913 7.15402 7.29952 8.01582 8.26665 9.25094 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007410 B = 0.003061 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.758874 B = 9145.556092 C =12268.183842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.586 6.586 4 N -0.713 5.713 5 C 0.129 3.871 6 H 0.115 0.885 7 C -0.156 4.156 8 C 0.509 3.491 9 O -0.567 6.567 10 N -0.594 5.594 11 C 0.123 3.877 12 C 0.150 3.850 13 N -0.742 5.742 14 C -0.251 4.251 15 H 0.073 0.927 16 C -0.071 4.071 17 N -0.967 5.967 18 Si 0.976 3.024 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.274 1.274 22 C 0.105 3.895 23 C -0.092 4.092 24 C -0.088 4.088 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.128 4.128 29 C -0.127 4.127 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.415 0.585 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.003 0.997 41 H 0.376 0.624 42 H 0.253 0.747 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.126 0.874 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.136 0.864 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 25.884 2.384 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.467 6.467 4 N -0.368 5.368 5 C 0.020 3.980 6 H 0.133 0.867 7 C -0.214 4.214 8 C 0.297 3.703 9 O -0.445 6.445 10 N -0.325 5.325 11 C -0.001 4.001 12 C 0.022 3.978 13 N -0.385 5.385 14 C -0.383 4.383 15 H 0.091 0.909 16 C -0.264 4.264 17 N -0.617 5.617 18 Si 0.804 3.196 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.200 1.200 22 C -0.017 4.017 23 C -0.130 4.130 24 C -0.089 4.089 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.145 4.145 29 C -0.145 4.145 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.208 0.792 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.144 0.856 48 H 0.155 0.845 49 H 0.157 0.843 50 H 0.154 0.846 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.713 26.035 2.508 27.269 hybrid contribution 0.306 -1.580 -0.050 1.610 sum -7.408 24.455 2.458 25.671 Atomic orbital electron populations 1.21885 0.88018 1.06098 1.06350 1.21553 0.92241 0.82270 0.73891 1.90691 1.71760 1.32393 1.51818 1.46085 1.05534 1.10269 1.74896 1.20797 0.82845 0.95212 0.99158 0.86709 1.22130 1.02586 1.03529 0.93163 1.21038 0.81756 0.90086 0.77435 1.90708 1.56664 1.39583 1.57564 1.47842 1.12445 1.12514 1.59673 1.21400 0.99141 0.84131 0.95407 1.20939 0.95237 0.86650 0.94977 1.42364 1.70606 1.17084 1.08483 1.19539 1.29472 0.97006 0.92239 0.90914 1.25589 1.03058 1.00365 0.97368 1.69807 1.53434 1.26599 1.11878 0.85190 0.78544 0.78307 0.77583 1.20601 1.21833 1.20027 1.21984 0.95404 0.85480 0.98799 1.20944 0.99133 0.94239 0.98678 1.19743 0.94783 0.94878 0.99458 1.21251 1.00368 0.92910 0.99677 1.21417 0.94255 0.99029 0.99683 1.21465 0.96315 0.98499 0.98426 1.21430 1.00450 0.93163 0.99497 1.21298 0.93653 0.99422 1.00102 0.88555 0.87337 0.87650 0.74758 0.91949 0.89695 0.90187 0.91552 0.88591 0.95293 0.97861 0.79209 0.93792 0.88220 0.88888 0.90311 0.90855 0.85639 0.84496 0.84252 0.84605 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.39 71.24 0.74 -0.96 16 2 C 0.51 9.82 7.90 87.66 0.69 10.51 16 3 O -0.59 -15.31 16.76 -3.03 -0.05 -15.36 16 4 N -0.71 -14.19 5.04 -446.10 -2.25 -16.44 16 5 C 0.13 2.78 2.13 44.24 0.09 2.87 16 6 H 0.12 2.39 5.56 -2.39 -0.01 2.38 16 7 C -0.16 -2.96 9.20 71.98 0.66 -2.30 16 8 C 0.51 14.14 6.92 87.66 0.61 14.74 16 9 O -0.57 -20.06 15.50 -3.03 -0.05 -20.11 16 10 N -0.59 -15.54 2.47 -821.81 -2.03 -17.58 16 11 C 0.12 4.04 5.52 86.38 0.48 4.52 16 12 C 0.15 6.18 6.58 86.38 0.57 6.75 16 13 N -0.74 -38.60 5.60 -343.45 -1.92 -40.53 16 14 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 17 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 18 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 C 0.11 2.07 4.98 86.38 0.43 2.50 16 23 C -0.09 -1.68 5.53 29.85 0.17 -1.51 16 24 C -0.09 -1.62 5.13 -19.86 -0.10 -1.72 16 25 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 26 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 28 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 29 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 30 H 0.10 0.66 7.91 -2.38 -0.02 0.64 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.41 7.92 7.57 -92.71 -0.70 7.22 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.43 6.33 -2.39 -0.02 1.42 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 2.48 7.42 -2.38 -0.02 2.46 16 38 H 0.10 2.85 8.07 -2.39 -0.02 2.83 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.38 20.49 7.67 -92.71 -0.71 19.78 16 42 H 0.25 15.05 8.31 -92.71 -0.77 14.27 16 43 H 0.10 1.68 4.76 -2.39 -0.01 1.67 16 44 H 0.09 1.85 8.07 -2.39 -0.02 1.83 16 45 H 0.08 1.49 8.08 -2.39 -0.02 1.48 16 46 H 0.07 1.36 7.10 -2.39 -0.02 1.34 16 47 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.14 1.64 8.06 -2.92 -0.02 1.61 16 49 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 50 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 51 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -75.33 422.49 2.28 -73.05 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.47 Total: 38.88 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.74 Total: 8.81 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.92 Total: -133.68 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.10 Total: -35.47 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -75.33 2.28 -73.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162681746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.489 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds