Wall clock time and date at job start Wed Apr 1 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21280 * 119.99748 * 2 1 4 4 N 1.34769 * 119.99510 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99798 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47068 * 34.99973 * 5 4 2 7 7 C 1.52997 * 109.47212 * 274.99913 * 5 4 2 8 8 C 1.50699 * 109.47262 * 154.99826 * 5 4 2 9 9 O 1.21284 * 119.99882 * 20.00134 * 8 5 4 10 10 N 1.34777 * 120.00049 * 199.99853 * 8 5 4 11 11 C 1.46500 * 119.99951 * 180.02562 * 10 8 5 12 12 C 1.53003 * 109.47046 * 90.00170 * 11 10 8 13 13 N 1.46500 * 109.47046 * 180.02562 * 12 11 10 14 14 C 1.36932 * 120.00009 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99869 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46987 * 59.99909 * 18 16 14 20 20 H 1.48499 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47535 * 299.99849 * 18 16 14 22 22 C 1.46495 * 119.99786 * 0.02562 * 10 8 5 23 23 C 1.53002 * 109.47337 * 89.99856 * 22 10 8 24 24 C 1.50697 * 109.46977 * 179.97438 * 23 22 10 25 25 C 1.38238 * 119.99994 * 269.72442 * 24 23 22 26 26 C 1.38234 * 120.00095 * 179.76919 * 25 24 23 27 27 C 1.38239 * 119.99723 * 0.50883 * 26 25 24 28 28 C 1.38232 * 119.99902 * 359.74662 * 27 26 25 29 29 C 1.38230 * 120.00073 * 90.00348 * 24 23 22 30 30 H 1.08994 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46765 * 299.99964 * 1 2 3 32 32 H 1.08999 * 109.47513 * 59.99447 * 1 2 3 33 33 H 0.97005 * 120.00963 * 359.97438 * 4 2 1 34 34 H 1.08996 * 109.47853 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.47153 * 300.00008 * 7 5 4 36 36 H 1.08998 * 109.47533 * 59.99637 * 7 5 4 37 37 H 1.09001 * 109.46924 * 210.00269 * 11 10 8 38 38 H 1.09002 * 109.47079 * 330.00102 * 11 10 8 39 39 H 1.09003 * 109.46907 * 299.99539 * 12 11 10 40 40 H 1.08993 * 109.46997 * 59.99978 * 12 11 10 41 41 H 0.97011 * 119.99902 * 359.97438 * 13 12 11 42 42 H 0.97006 * 120.00305 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.46752 * 209.99732 * 22 10 8 44 44 H 1.09000 * 109.47371 * 329.99578 * 22 10 8 45 45 H 1.08991 * 109.47126 * 299.99780 * 23 22 10 46 46 H 1.09006 * 109.46761 * 60.00153 * 23 22 10 47 47 H 1.08002 * 120.00332 * 0.02562 * 25 24 23 48 48 H 1.07999 * 120.00647 * 180.22834 * 26 25 24 49 49 H 1.07998 * 120.00196 * 179.72627 * 27 26 25 50 50 H 1.08005 * 120.00103 * 179.97438 * 28 27 26 51 51 H 1.08002 * 119.99820 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1553 -1.0413 -1.4382 8 6 4.1484 -2.4551 0.5989 9 8 3.4199 -3.4232 0.6541 10 7 5.4073 -2.5310 1.0742 11 6 5.8960 -3.7831 1.6570 12 6 6.5308 -4.6419 0.5614 13 7 7.0190 -5.8943 1.1440 14 6 7.6298 -6.8270 0.3490 15 1 7.7513 -6.6396 -0.7075 16 6 8.0918 -8.0139 0.9011 17 7 7.9433 -8.2426 2.1887 18 14 8.9244 -9.2866 -0.1836 19 1 10.1306 -8.6893 -0.8110 20 1 9.3235 -10.4552 0.6413 21 1 7.9818 -9.7269 -1.2432 22 6 6.2869 -1.3614 1.0080 23 6 6.1285 -0.5312 2.2834 24 6 7.0338 0.6716 2.2155 25 6 8.3231 0.5950 2.7084 26 6 9.1551 1.6968 2.6418 27 6 8.6945 2.8785 2.0918 28 6 7.4036 2.9567 1.6037 29 6 6.5733 1.8532 1.6655 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6958 -2.0073 -0.0005 34 1 5.2453 -1.0409 -1.4387 35 1 3.7917 -1.8830 -2.0277 36 1 3.7918 -0.1099 -1.8723 37 1 6.6401 -3.5616 2.4220 38 1 5.0631 -4.3243 2.1060 39 1 5.7866 -4.8634 -0.2037 40 1 7.3636 -4.1008 0.1124 41 1 6.9101 -6.0625 2.0932 42 1 8.2665 -9.0718 2.5746 43 1 7.3220 -1.6901 0.9147 44 1 6.0193 -0.7539 0.1434 45 1 5.0935 -0.2025 2.3767 46 1 6.3962 -1.1387 3.1479 47 1 8.6816 -0.3270 3.1418 48 1 10.1636 1.6360 3.0235 49 1 9.3431 3.7407 2.0437 50 1 7.0436 3.8800 1.1743 51 1 5.5647 1.9143 1.2841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162681748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:03 Heat of formation + Delta-G solvation = -61.567765 kcal Electronic energy + Delta-G solvation = -30698.730698 eV Core-core repulsion = 26597.214139 eV Total energy + Delta-G solvation = -4101.516559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77693 -40.37363 -40.01882 -37.70918 -36.59865 -36.02790 -34.19442 -33.25618 -32.48977 -31.72130 -30.22388 -29.67724 -28.84607 -26.24901 -25.36369 -24.43358 -23.43105 -23.19574 -21.92373 -21.47763 -20.48806 -19.23381 -18.65540 -18.05607 -17.66404 -17.24754 -16.96227 -16.51635 -16.28898 -16.12848 -16.06336 -15.83586 -15.37092 -15.19678 -15.11112 -14.85117 -14.68649 -14.35045 -14.29493 -14.09034 -13.78135 -13.75631 -13.44561 -13.23758 -13.16455 -13.06586 -13.00409 -12.87203 -12.74378 -12.71007 -12.36773 -12.18853 -12.14286 -11.89898 -11.86480 -11.70288 -11.07018 -10.98303 -10.94998 -10.28131 -10.03217 -9.77712 -9.48120 -9.06644 -7.97942 -5.28456 0.45455 0.54511 1.34209 1.45975 1.49748 1.54269 1.56877 1.66410 2.30315 2.55489 2.90833 3.17348 3.35567 3.74781 3.82623 3.92747 3.96658 4.02894 4.03878 4.09627 4.11977 4.16520 4.22666 4.32555 4.35007 4.41161 4.48912 4.51570 4.58750 4.61792 4.66846 4.67571 4.69437 4.85503 4.93534 5.00554 5.06830 5.07981 5.10977 5.20841 5.22208 5.28164 5.38124 5.47342 5.62729 5.67922 5.74466 6.16211 6.20844 6.23542 6.46963 6.91906 7.15399 7.29934 8.01597 8.26701 9.25116 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007410 B = 0.003061 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3778.009137 B = 9145.364572 C =12267.511546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.586 6.586 4 N -0.713 5.713 5 C 0.129 3.871 6 H 0.115 0.885 7 C -0.156 4.156 8 C 0.509 3.491 9 O -0.567 6.567 10 N -0.594 5.594 11 C 0.123 3.877 12 C 0.150 3.850 13 N -0.742 5.742 14 C -0.251 4.251 15 H 0.073 0.927 16 C -0.071 4.071 17 N -0.967 5.967 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.105 3.895 23 C -0.092 4.092 24 C -0.088 4.088 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.126 4.126 29 C -0.124 4.124 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.415 0.585 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.003 0.997 40 H 0.029 0.971 41 H 0.376 0.624 42 H 0.253 0.747 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.127 0.873 48 H 0.136 0.864 49 H 0.140 0.860 50 H 0.137 0.863 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 25.889 -2.366 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.467 6.467 4 N -0.368 5.368 5 C 0.020 3.980 6 H 0.133 0.867 7 C -0.214 4.214 8 C 0.297 3.703 9 O -0.445 6.445 10 N -0.325 5.325 11 C -0.001 4.001 12 C 0.022 3.978 13 N -0.385 5.385 14 C -0.383 4.383 15 H 0.091 0.909 16 C -0.264 4.264 17 N -0.617 5.617 18 Si 0.804 3.196 19 H -0.200 1.200 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.017 4.017 23 C -0.130 4.130 24 C -0.089 4.089 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.144 4.144 29 C -0.142 4.142 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.252 0.748 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.047 0.953 41 H 0.208 0.792 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.145 0.855 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.155 0.845 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.707 26.039 -2.491 27.270 hybrid contribution 0.308 -1.579 0.049 1.609 sum -7.399 24.460 -2.442 25.671 Atomic orbital electron populations 1.21885 0.88019 1.06097 1.06351 1.21552 0.92241 0.82270 0.73891 1.90691 1.71759 1.32391 1.51820 1.46086 1.05534 1.10269 1.74893 1.20797 0.82847 0.95211 0.99155 0.86708 1.22129 1.02587 1.03531 0.93163 1.21042 0.81759 0.90087 0.77430 1.90710 1.56658 1.39590 1.57562 1.47841 1.12436 1.12498 1.59697 1.21399 0.99139 0.84125 0.95415 1.20939 0.95244 0.86638 0.94984 1.42364 1.70606 1.17054 1.08513 1.19537 1.29469 0.96997 0.92260 0.90913 1.25588 1.03067 1.00344 0.97374 1.69802 1.53397 1.26571 1.11942 0.85192 0.78545 0.78309 0.77589 1.20025 1.21833 1.20605 1.21985 0.95401 0.85482 0.98799 1.20945 0.99131 0.94237 0.98680 1.19740 0.94812 0.94898 0.99410 1.21299 0.93650 0.99435 1.00093 1.21430 1.00433 0.93181 0.99495 1.21464 0.96303 0.98491 0.98447 1.21418 0.94271 0.99011 0.99688 1.21249 1.00382 0.92906 0.99669 0.88555 0.87651 0.87338 0.74755 0.89693 0.91950 0.90186 0.88592 0.91550 0.97864 0.95286 0.79208 0.93788 0.88889 0.88220 0.90857 0.90308 0.85515 0.84603 0.84254 0.84495 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.39 71.24 0.74 -0.96 16 2 C 0.51 9.82 7.90 87.66 0.69 10.51 16 3 O -0.59 -15.31 16.76 -3.03 -0.05 -15.36 16 4 N -0.71 -14.19 5.04 -446.10 -2.25 -16.44 16 5 C 0.13 2.78 2.13 44.24 0.09 2.87 16 6 H 0.12 2.39 5.56 -2.39 -0.01 2.38 16 7 C -0.16 -2.96 9.20 71.98 0.66 -2.30 16 8 C 0.51 14.14 6.93 87.66 0.61 14.74 16 9 O -0.57 -20.06 15.50 -3.04 -0.05 -20.11 16 10 N -0.59 -15.54 2.47 -821.80 -2.03 -17.58 16 11 C 0.12 4.04 5.52 86.38 0.48 4.52 16 12 C 0.15 6.18 6.58 86.38 0.57 6.75 16 13 N -0.74 -38.60 5.60 -343.46 -1.92 -40.53 16 14 C -0.25 -14.33 9.99 84.04 0.84 -13.49 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 17 N -0.97 -59.42 13.06 21.65 0.28 -59.13 16 18 Si 0.98 46.38 29.55 68.60 2.03 48.40 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 C 0.11 2.07 4.98 86.38 0.43 2.50 16 23 C -0.09 -1.68 5.53 29.85 0.17 -1.51 16 24 C -0.09 -1.62 5.13 -19.87 -0.10 -1.72 16 25 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 26 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 28 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 29 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 30 H 0.10 0.66 7.91 -2.39 -0.02 0.64 16 31 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.41 7.92 7.58 -92.70 -0.70 7.22 16 34 H 0.08 1.43 6.33 -2.39 -0.02 1.42 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.85 8.07 -2.39 -0.02 2.83 16 38 H 0.07 2.48 7.42 -2.39 -0.02 2.47 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.38 20.49 7.67 -92.70 -0.71 19.78 16 42 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 43 H 0.09 1.85 8.07 -2.38 -0.02 1.83 16 44 H 0.10 1.68 4.76 -2.39 -0.01 1.67 16 45 H 0.07 1.36 7.10 -2.39 -0.02 1.34 16 46 H 0.08 1.49 8.08 -2.38 -0.02 1.48 16 47 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 48 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 51 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -75.34 422.49 2.28 -73.05 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.47 Total: 38.88 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.75 Total: 8.81 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -5.92 Total: -133.68 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.10 Total: -35.47 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.34 2.28 -73.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162681748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.486 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds