Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.53000 * 109.47048 * 120.00118 * 2 1 3 5 5 C 1.52999 * 109.46697 * 174.99890 * 4 2 1 6 6 H 1.09002 * 109.47002 * 55.00229 * 5 4 2 7 7 N 1.46900 * 109.47341 * 295.00329 * 5 4 2 8 8 C 1.50698 * 109.47068 * 174.99929 * 5 4 2 9 9 O 1.21282 * 120.00250 * 100.00364 * 8 5 4 10 10 N 1.34780 * 120.00441 * 280.00439 * 8 5 4 11 11 C 1.46493 * 120.00329 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47517 * 324.99741 * 11 10 8 13 13 C 1.53008 * 109.47266 * 84.99837 * 11 10 8 14 14 C 1.50706 * 109.47199 * 204.99767 * 11 10 8 15 15 O 1.21280 * 119.99771 * 359.97438 * 14 11 10 16 16 N 1.34774 * 119.99734 * 179.97438 * 14 11 10 17 17 C 1.39938 * 119.99651 * 174.88894 * 16 14 11 18 18 C 1.39290 * 119.94837 * 325.53183 * 17 16 14 19 19 C 1.38490 * 120.42944 * 179.75893 * 18 17 16 20 20 C 1.37682 * 120.32042 * 0.51938 * 19 18 17 21 21 C 1.40743 * 119.88266 * 359.73698 * 20 19 18 22 22 C 1.41412 * 120.20665 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99484 * 205.16693 * 22 21 20 24 24 C 1.39931 * 120.00286 * 25.17040 * 22 21 20 25 25 N 1.30829 * 119.99698 * 16.80523 * 24 22 21 26 26 Si 1.86804 * 120.00095 * 196.80901 * 24 22 21 27 27 H 1.48501 * 109.46980 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47129 * 119.99451 * 26 24 22 29 29 H 1.48495 * 109.46969 * 239.99752 * 26 24 22 30 30 C 1.38239 * 119.94770 * 145.80806 * 17 16 14 31 31 H 1.09007 * 109.47322 * 299.99670 * 1 2 3 32 32 H 1.09003 * 109.47705 * 59.99786 * 1 2 3 33 33 H 1.09008 * 109.47154 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46856 * 240.00310 * 2 1 3 35 35 H 1.09000 * 109.47313 * 300.00086 * 3 2 1 36 36 H 1.09002 * 109.47102 * 60.00460 * 3 2 1 37 37 H 1.09002 * 109.47497 * 179.97438 * 3 2 1 38 38 H 1.09003 * 109.47195 * 55.00261 * 4 2 1 39 39 H 1.08992 * 109.47071 * 294.99835 * 4 2 1 40 40 H 1.00903 * 110.99736 * 299.99916 * 7 5 4 41 41 H 1.00894 * 111.00358 * 63.95317 * 7 5 4 42 42 H 0.97000 * 119.99515 * 359.97438 * 10 8 5 43 43 H 1.09004 * 109.46967 * 60.00088 * 13 11 10 44 44 H 1.08994 * 109.47159 * 179.97438 * 13 11 10 45 45 H 1.08999 * 109.46787 * 300.00094 * 13 11 10 46 46 H 0.96997 * 120.00394 * 354.89727 * 16 14 11 47 47 H 1.08001 * 119.78987 * 0.02562 * 18 17 16 48 48 H 1.07998 * 119.83919 * 180.25790 * 19 18 17 49 49 H 1.07999 * 120.05863 * 179.76674 * 20 19 18 50 50 H 0.97001 * 119.99483 * 180.02562 * 25 24 22 51 51 H 1.07998 * 120.15861 * 359.95332 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9953 0.1612 1.0526 7 7 3.9490 -1.6894 0.0593 8 6 4.0774 -1.4303 2.4721 9 8 4.3700 -2.6063 2.5182 10 7 4.2106 -0.6593 3.5695 11 6 4.7084 -1.2419 4.8180 12 1 4.3486 -2.2668 4.9096 13 6 6.2384 -1.2375 4.8086 14 6 4.2109 -0.4287 5.9853 15 8 3.5100 0.5422 5.7930 16 7 4.5449 -0.7805 7.2427 17 6 4.1735 0.0332 8.3189 18 6 4.1379 1.4170 8.1645 19 6 3.7669 2.2314 9.2214 20 6 3.4393 1.6819 10.4406 21 6 3.4759 0.2856 10.6129 22 6 3.1402 -0.2861 11.8620 23 1 3.5350 -1.2531 12.1368 24 6 2.2964 0.4009 12.7419 25 7 1.5615 1.3908 12.3043 26 14 2.2194 -0.0955 14.5411 27 1 3.1401 -1.2359 14.7798 28 1 2.6244 1.0541 15.3895 29 1 0.8323 -0.4996 14.8842 30 6 3.8480 -0.5374 9.5353 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4426 0.0005 38 1 1.6054 -1.7199 1.2951 39 1 1.7517 -0.1584 2.1369 40 1 3.5618 -2.6156 0.1614 41 1 3.6730 -1.2769 -0.8191 42 1 3.9770 0.2814 3.5326 43 1 6.5982 -0.2126 4.7171 44 1 6.6087 -1.6706 5.7377 45 1 6.5982 -1.8256 3.9644 46 1 5.0429 -1.5976 7.4017 47 1 4.3971 1.8576 7.2131 48 1 3.7386 3.3030 9.0899 49 1 3.1542 2.3212 11.2630 50 1 0.9768 1.8673 12.9143 51 1 3.8789 -1.6100 9.6570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218988636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -71.365516 kcal Electronic energy + Delta-G solvation = -30118.035453 eV Core-core repulsion = 26016.094032 eV Total energy + Delta-G solvation = -4101.941421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.60377 -39.59696 -37.63479 -37.20237 -35.08834 -34.54823 -33.67464 -33.18167 -31.06235 -29.88538 -28.37781 -28.00998 -27.57096 -25.37817 -25.19795 -23.86112 -21.48085 -20.98038 -20.50676 -20.16931 -19.67442 -18.18290 -17.77143 -16.80946 -16.23851 -15.95952 -15.56066 -15.36859 -15.10535 -15.01925 -14.81146 -14.65219 -14.34524 -14.30376 -13.77151 -13.62355 -13.30159 -12.98011 -12.91761 -12.79977 -12.56690 -12.46853 -12.44814 -12.26771 -12.01743 -11.74302 -11.71072 -11.38329 -11.24453 -11.18778 -11.12126 -11.05826 -10.95940 -10.51744 -10.24181 -9.97916 -9.69283 -9.57379 -9.31304 -9.20696 -9.03400 -8.97845 -7.51883 -7.00299 -6.76755 -4.40418 2.41183 2.46200 2.75950 2.77467 3.05810 3.10813 3.11604 3.28323 3.55553 3.91353 4.22746 4.34304 4.40335 4.46555 4.60374 4.67326 4.76477 4.80997 4.94214 5.00101 5.04961 5.21593 5.27427 5.35921 5.45494 5.49072 5.53423 5.57592 5.63520 5.64387 5.78019 5.90555 5.95373 5.98459 6.18810 6.25460 6.46525 6.64565 6.68136 6.87366 6.94035 6.99708 7.09547 7.20646 7.36334 7.52599 7.58643 7.88684 7.98669 8.05053 8.08909 8.24523 8.45843 8.61757 8.85225 8.91717 10.16888 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002011 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.177788 B =13921.104214 C =14676.143540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.149 4.149 5 C 0.077 3.923 6 H 0.106 0.894 7 N -0.827 5.827 8 C 0.525 3.475 9 O -0.534 6.534 10 N -0.710 5.710 11 C 0.126 3.874 12 H 0.112 0.888 13 C -0.158 4.158 14 C 0.504 3.496 15 O -0.520 6.520 16 N -0.659 5.659 17 C 0.151 3.849 18 C -0.226 4.226 19 C -0.095 4.095 20 C -0.166 4.166 21 C 0.121 3.879 22 C -0.463 4.463 23 H 0.078 0.922 24 C 0.075 3.925 25 N -0.793 5.793 26 Si 0.908 3.092 27 H -0.261 1.261 28 H -0.272 1.272 29 H -0.275 1.275 30 C -0.242 4.242 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.351 0.649 41 H 0.346 0.654 42 H 0.410 0.590 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.402 0.598 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.280 0.720 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 -2.303 -20.294 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.211 4.211 4 C -0.188 4.188 5 C -0.039 4.039 6 H 0.123 0.877 7 N -0.359 5.359 8 C 0.310 3.690 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.017 3.983 12 H 0.130 0.870 13 C -0.217 4.217 14 C 0.289 3.711 15 O -0.395 6.395 16 N -0.303 5.303 17 C 0.060 3.940 18 C -0.247 4.247 19 C -0.114 4.114 20 C -0.186 4.186 21 C 0.118 3.882 22 C -0.493 4.493 23 H 0.096 0.904 24 C -0.142 4.142 25 N -0.419 5.419 26 Si 0.733 3.267 27 H -0.184 1.184 28 H -0.197 1.197 29 H -0.200 1.200 30 C -0.264 4.264 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.247 0.753 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.237 0.763 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.137 0.863 50 H 0.091 0.909 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.807 -2.185 -20.111 20.423 hybrid contribution -1.163 -0.175 0.774 1.408 sum 1.644 -2.360 -19.337 19.550 Atomic orbital electron populations 1.21837 0.94703 1.01876 1.02154 1.21101 0.96282 0.96543 0.97404 1.21950 1.01167 0.95653 1.02366 1.22430 0.94806 1.01923 0.99682 1.21386 0.94254 0.98208 0.90006 0.87652 1.58564 1.67809 1.06287 1.03271 1.20468 0.77243 0.86596 0.84678 1.90682 1.49635 1.16162 1.84431 1.45732 1.67055 1.14309 1.09321 1.20748 0.95631 0.98680 0.83208 0.87013 1.22120 0.92705 1.03298 1.03534 1.20495 0.80591 0.85768 0.84239 1.90714 1.36269 1.27797 1.84738 1.43384 1.55663 1.25947 1.05261 1.17413 1.00777 0.89745 0.86082 1.20257 1.14013 0.91284 0.99118 1.20579 0.99796 0.97342 0.93723 1.21387 1.05104 0.95422 0.96678 1.17385 0.87883 0.91395 0.91497 1.19551 1.25525 1.04507 0.99718 0.90394 1.25903 0.93522 0.93949 1.00844 1.69839 1.17610 1.17786 1.36630 0.86266 0.78837 0.79677 0.81962 1.18417 1.19699 1.20033 1.20714 1.15146 0.97799 0.92738 0.92277 0.92510 0.92705 0.91360 0.92476 0.92089 0.92352 0.91139 0.90323 0.83455 0.83924 0.75327 0.91664 0.90802 0.90807 0.76346 0.88254 0.89029 0.86276 0.90906 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.09 -0.59 2.79 -90.62 -0.25 -0.84 16 3 C -0.15 -0.94 8.95 37.16 0.33 -0.60 16 4 C -0.15 -1.17 4.31 -26.73 -0.12 -1.28 16 5 C 0.08 0.66 3.07 -68.87 -0.21 0.45 16 6 H 0.11 0.80 6.34 -51.93 -0.33 0.47 16 7 N -0.83 -6.83 8.93 -5.65 -0.05 -6.88 16 8 C 0.52 6.27 7.04 -10.99 -0.08 6.19 16 9 O -0.53 -8.00 15.91 5.56 0.09 -7.91 16 10 N -0.71 -8.37 4.95 -54.93 -0.27 -8.65 16 11 C 0.13 1.59 2.98 -69.08 -0.21 1.38 16 12 H 0.11 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.16 -1.68 9.39 37.16 0.35 -1.34 16 14 C 0.50 8.18 6.95 -10.98 -0.08 8.10 16 15 O -0.52 -10.17 13.58 5.56 0.08 -10.09 16 16 N -0.66 -11.12 5.19 -9.91 -0.05 -11.17 16 17 C 0.15 3.30 6.25 -83.76 -0.52 2.78 16 18 C -0.23 -5.19 8.66 -39.10 -0.34 -5.52 16 19 C -0.10 -2.27 10.02 -39.69 -0.40 -2.66 16 20 C -0.17 -4.29 8.69 -38.84 -0.34 -4.63 16 21 C 0.12 3.18 5.57 -106.85 -0.59 2.58 16 22 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 23 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 24 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 25 N -0.79 -20.40 10.94 55.55 0.61 -19.79 16 26 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 27 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 28 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 29 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 30 C -0.24 -5.73 9.70 -38.69 -0.38 -6.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.07 0.36 6.65 -51.93 -0.35 0.02 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.33 6.46 -51.93 -0.34 0.00 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.35 3.07 8.58 -39.29 -0.34 2.73 16 41 H 0.35 2.06 7.44 -39.30 -0.29 1.76 16 42 H 0.41 4.61 7.79 -40.82 -0.32 4.30 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.40 5.38 8.40 -40.82 -0.34 5.04 16 47 H 0.10 2.22 6.48 -52.49 -0.34 1.88 16 48 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 49 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 50 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 51 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 413.36 15.07 6.23 6.23 Total: -1.00 -31.18 413.36 -9.27 -40.46 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -7.96 Total: 17.17 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.91 Total: -12.72 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.23 Total: -46.49 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.18 -9.27 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.909 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds