Wall clock time and date at job start Wed Apr 1 2020 04:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.53000 * 109.47048 * 120.00118 * 2 1 3 5 5 C 1.52999 * 109.46697 * 174.99890 * 4 2 1 6 6 H 1.09002 * 109.47002 * 55.00229 * 5 4 2 7 7 N 1.46900 * 109.47341 * 295.00329 * 5 4 2 8 8 C 1.50698 * 109.47068 * 174.99929 * 5 4 2 9 9 O 1.21282 * 120.00250 * 100.00364 * 8 5 4 10 10 N 1.34780 * 120.00441 * 280.00439 * 8 5 4 11 11 C 1.46493 * 120.00329 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47517 * 324.99741 * 11 10 8 13 13 C 1.53008 * 109.47266 * 84.99837 * 11 10 8 14 14 C 1.50706 * 109.47199 * 204.99767 * 11 10 8 15 15 O 1.21280 * 119.99771 * 359.97438 * 14 11 10 16 16 N 1.34774 * 119.99734 * 179.97438 * 14 11 10 17 17 C 1.39938 * 119.99651 * 174.88894 * 16 14 11 18 18 C 1.39290 * 119.94837 * 325.53183 * 17 16 14 19 19 C 1.38490 * 120.42944 * 179.75893 * 18 17 16 20 20 C 1.37682 * 120.32042 * 0.51938 * 19 18 17 21 21 C 1.40743 * 119.88266 * 359.73698 * 20 19 18 22 22 C 1.41412 * 120.20665 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99484 * 205.16693 * 22 21 20 24 24 C 1.39931 * 120.00286 * 25.17040 * 22 21 20 25 25 N 1.30829 * 119.99698 * 16.80523 * 24 22 21 26 26 Si 1.86804 * 120.00095 * 196.80901 * 24 22 21 27 27 H 1.48501 * 109.46980 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47129 * 119.99451 * 26 24 22 29 29 H 1.48495 * 109.46969 * 239.99752 * 26 24 22 30 30 C 1.38239 * 119.94770 * 145.80806 * 17 16 14 31 31 H 1.09007 * 109.47322 * 299.99670 * 1 2 3 32 32 H 1.09003 * 109.47705 * 59.99786 * 1 2 3 33 33 H 1.09008 * 109.47154 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46856 * 240.00310 * 2 1 3 35 35 H 1.09000 * 109.47313 * 300.00086 * 3 2 1 36 36 H 1.09002 * 109.47102 * 60.00460 * 3 2 1 37 37 H 1.09002 * 109.47497 * 179.97438 * 3 2 1 38 38 H 1.09003 * 109.47195 * 55.00261 * 4 2 1 39 39 H 1.08992 * 109.47071 * 294.99835 * 4 2 1 40 40 H 1.00903 * 110.99736 * 299.99916 * 7 5 4 41 41 H 1.00894 * 111.00358 * 63.95317 * 7 5 4 42 42 H 0.97000 * 119.99515 * 359.97438 * 10 8 5 43 43 H 1.09004 * 109.46967 * 60.00088 * 13 11 10 44 44 H 1.08994 * 109.47159 * 179.97438 * 13 11 10 45 45 H 1.08999 * 109.46787 * 300.00094 * 13 11 10 46 46 H 0.96997 * 120.00394 * 354.89727 * 16 14 11 47 47 H 1.08001 * 119.78987 * 0.02562 * 18 17 16 48 48 H 1.07998 * 119.83919 * 180.25790 * 19 18 17 49 49 H 1.07999 * 120.05863 * 179.76674 * 20 19 18 50 50 H 0.97001 * 119.99483 * 180.02562 * 25 24 22 51 51 H 1.07998 * 120.15861 * 359.95332 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9953 0.1612 1.0526 7 7 3.9490 -1.6894 0.0593 8 6 4.0774 -1.4303 2.4721 9 8 4.3700 -2.6063 2.5182 10 7 4.2106 -0.6593 3.5695 11 6 4.7084 -1.2419 4.8180 12 1 4.3486 -2.2668 4.9096 13 6 6.2384 -1.2375 4.8086 14 6 4.2109 -0.4287 5.9853 15 8 3.5100 0.5422 5.7930 16 7 4.5449 -0.7805 7.2427 17 6 4.1735 0.0332 8.3189 18 6 4.1379 1.4170 8.1645 19 6 3.7669 2.2314 9.2214 20 6 3.4393 1.6819 10.4406 21 6 3.4759 0.2856 10.6129 22 6 3.1402 -0.2861 11.8620 23 1 3.5350 -1.2531 12.1368 24 6 2.2964 0.4009 12.7419 25 7 1.5615 1.3908 12.3043 26 14 2.2194 -0.0955 14.5411 27 1 3.1401 -1.2359 14.7798 28 1 2.6244 1.0541 15.3895 29 1 0.8323 -0.4996 14.8842 30 6 3.8480 -0.5374 9.5353 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4426 0.0005 38 1 1.6054 -1.7199 1.2951 39 1 1.7517 -0.1584 2.1369 40 1 3.5618 -2.6156 0.1614 41 1 3.6730 -1.2769 -0.8191 42 1 3.9770 0.2814 3.5326 43 1 6.5982 -0.2126 4.7171 44 1 6.6087 -1.6706 5.7377 45 1 6.5982 -1.8256 3.9644 46 1 5.0429 -1.5976 7.4017 47 1 4.3971 1.8576 7.2131 48 1 3.7386 3.3030 9.0899 49 1 3.1542 2.3212 11.2630 50 1 0.9768 1.8673 12.9143 51 1 3.8789 -1.6100 9.6570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218988636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:03 Heat of formation + Delta-G solvation = -92.403897 kcal Electronic energy + Delta-G solvation = -30118.947746 eV Core-core repulsion = 26016.094032 eV Total energy + Delta-G solvation = -4102.853714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78822 -40.78672 -39.11699 -38.14827 -36.33787 -36.04040 -34.92868 -34.32671 -32.12807 -31.78041 -29.83078 -28.88814 -28.06487 -27.20977 -26.18400 -24.89743 -23.05740 -22.70891 -21.42661 -21.18245 -20.77033 -19.52050 -19.11716 -18.03401 -17.45497 -17.23908 -16.85797 -16.59144 -16.54928 -16.14906 -15.98727 -15.67435 -15.42918 -15.06351 -14.91796 -14.81992 -14.54514 -14.48852 -14.13865 -13.85834 -13.58390 -13.48175 -13.41007 -13.31685 -13.01342 -13.00695 -12.89940 -12.76007 -12.70044 -12.59203 -12.23352 -11.96131 -11.93802 -11.68333 -11.59431 -11.47701 -11.15403 -11.03902 -10.88672 -10.70672 -10.27133 -9.69247 -9.42569 -8.79863 -8.61409 -6.36377 0.79635 0.96252 1.39822 1.46243 1.50420 1.55058 1.68645 1.73476 2.21118 2.33783 2.74702 3.43001 3.55864 3.67605 3.71426 3.79221 3.90852 3.94851 4.03966 4.11777 4.15548 4.41578 4.42225 4.60737 4.65583 4.67615 4.72371 4.74175 4.82298 4.92544 4.99209 5.01868 5.02214 5.04013 5.09771 5.13532 5.16885 5.25430 5.26231 5.33404 5.39180 5.45243 5.71493 5.81648 6.03021 6.07359 6.10211 6.25911 6.42977 6.53232 6.54399 6.68639 6.92348 6.95843 7.12297 7.15449 8.33957 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002011 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.177788 B =13921.104214 C =14676.143540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.142 4.142 5 C 0.085 3.915 6 H 0.121 0.879 7 N -0.831 5.831 8 C 0.522 3.478 9 O -0.565 6.565 10 N -0.708 5.708 11 C 0.136 3.864 12 H 0.115 0.885 13 C -0.151 4.151 14 C 0.507 3.493 15 O -0.552 6.552 16 N -0.651 5.651 17 C 0.163 3.837 18 C -0.233 4.233 19 C -0.098 4.098 20 C -0.194 4.194 21 C 0.093 3.907 22 C -0.495 4.495 23 H 0.080 0.920 24 C 0.033 3.967 25 N -0.827 5.827 26 Si 0.984 3.016 27 H -0.255 1.255 28 H -0.265 1.265 29 H -0.268 1.268 30 C -0.254 4.254 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.348 0.652 41 H 0.360 0.640 42 H 0.413 0.587 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.421 0.579 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.288 0.712 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -2.929 -21.439 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.211 4.211 4 C -0.182 4.182 5 C -0.030 4.030 6 H 0.138 0.862 7 N -0.365 5.365 8 C 0.309 3.691 9 O -0.443 6.443 10 N -0.362 5.362 11 C 0.027 3.973 12 H 0.133 0.867 13 C -0.210 4.210 14 C 0.295 3.705 15 O -0.429 6.429 16 N -0.297 5.297 17 C 0.070 3.930 18 C -0.254 4.254 19 C -0.117 4.117 20 C -0.214 4.214 21 C 0.090 3.910 22 C -0.525 4.525 23 H 0.098 0.902 24 C -0.182 4.182 25 N -0.453 5.453 26 Si 0.804 3.196 27 H -0.179 1.179 28 H -0.190 1.190 29 H -0.193 1.193 30 C -0.275 4.275 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.251 0.749 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.259 0.741 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.121 0.879 50 H 0.098 0.902 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.447 -2.817 -21.298 21.758 hybrid contribution -1.360 0.025 0.999 1.687 sum 2.087 -2.793 -20.299 20.596 Atomic orbital electron populations 1.21847 0.94898 1.01824 1.02112 1.21075 0.96061 0.96650 0.96975 1.21952 1.01529 0.95346 1.02299 1.22365 0.94217 1.01479 1.00115 1.21350 0.94515 0.98554 0.88584 0.86174 1.58556 1.67949 1.06217 1.03779 1.21051 0.76426 0.86177 0.85434 1.90666 1.51103 1.17501 1.85012 1.45784 1.66886 1.14490 1.09083 1.20690 0.96911 0.97772 0.81884 0.86695 1.22097 0.90754 1.03605 1.04519 1.21107 0.79501 0.85363 0.84554 1.90703 1.37612 1.29421 1.85201 1.43289 1.55760 1.26161 1.04458 1.17409 0.98797 0.89978 0.86814 1.20433 1.14017 0.91924 0.99062 1.20815 0.98987 0.98572 0.93281 1.21322 1.07430 0.95480 0.97177 1.17765 0.88599 0.92001 0.92619 1.19832 1.26705 1.05205 1.00711 0.90169 1.26794 0.92541 0.93652 1.05172 1.69901 1.18148 1.18790 1.38433 0.85135 0.79017 0.79477 0.75927 1.17881 1.18958 1.19326 1.20883 1.15297 0.98384 0.92966 0.93353 0.91530 0.92788 0.89901 0.91636 0.93109 0.91761 0.91963 0.91588 0.83753 0.82329 0.74927 0.91525 0.89158 0.90641 0.74138 0.87474 0.87233 0.87891 0.90174 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.09 -0.96 2.79 -10.79 -0.03 -0.99 16 3 C -0.15 -1.61 8.95 71.98 0.64 -0.96 16 4 C -0.14 -2.09 4.31 30.59 0.13 -1.96 16 5 C 0.09 1.34 3.07 44.17 0.14 1.48 16 6 H 0.12 1.56 6.34 -2.39 -0.02 1.55 16 7 N -0.83 -12.26 8.93 -171.80 -1.54 -13.79 16 8 C 0.52 11.85 7.04 87.66 0.62 12.46 16 9 O -0.56 -16.34 15.91 -3.04 -0.05 -16.39 16 10 N -0.71 -15.83 4.95 -446.08 -2.21 -18.04 16 11 C 0.14 3.21 2.98 44.25 0.13 3.34 16 12 H 0.12 2.72 7.58 -2.39 -0.02 2.71 16 13 C -0.15 -2.89 9.39 71.98 0.68 -2.21 16 14 C 0.51 15.80 6.95 87.66 0.61 16.41 16 15 O -0.55 -21.16 13.58 -3.03 -0.04 -21.20 16 16 N -0.65 -21.04 5.19 -303.65 -1.58 -22.62 16 17 C 0.16 7.03 6.25 38.10 0.24 7.27 16 18 C -0.23 -10.66 8.66 22.58 0.20 -10.46 16 19 C -0.10 -4.70 10.02 22.20 0.22 -4.48 16 20 C -0.19 -10.34 8.69 22.75 0.20 -10.14 16 21 C 0.09 4.99 5.57 -21.31 -0.12 4.87 16 22 C -0.50 -26.25 9.05 23.46 0.21 -26.04 16 23 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 24 C 0.03 1.66 5.16 85.25 0.44 2.10 16 25 N -0.83 -43.45 10.94 21.82 0.24 -43.21 16 26 Si 0.98 37.77 29.59 68.60 2.03 39.80 16 27 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 28 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 29 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 30 C -0.25 -12.04 9.70 22.85 0.22 -11.82 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.08 0.68 6.65 -2.39 -0.02 0.67 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.59 6.46 -2.39 -0.02 0.58 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.35 5.62 8.58 -89.69 -0.77 4.85 16 41 H 0.36 3.45 7.44 -89.70 -0.67 2.78 16 42 H 0.41 8.84 7.79 -92.71 -0.72 8.12 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.09 1.42 7.69 -2.39 -0.02 1.40 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.42 10.40 8.40 -92.71 -0.78 9.62 16 47 H 0.11 4.70 6.48 -2.91 -0.02 4.69 16 48 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 49 H 0.10 5.71 6.17 -2.91 -0.02 5.70 16 50 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 51 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -68.00 413.36 0.10 -67.90 By element: Atomic # 1 Polarization: 51.74 SS G_CDS: -1.95 Total: 49.79 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 5.19 Total: -22.23 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -5.08 Total: -97.66 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -68.00 0.10 -67.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.503 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds