Wall clock time and date at job start Wed Apr 1 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42898 * 109.47113 * 239.99870 * 2 1 3 5 5 C 1.42899 * 114.00025 * 90.00268 * 4 2 1 6 6 C 1.50698 * 109.47148 * 179.97438 * 5 4 2 7 7 C 1.38656 * 120.79103 * 269.71808 * 6 5 4 8 8 C 1.38207 * 119.16257 * 179.75677 * 7 6 5 9 9 N 1.31872 * 120.76102 * 0.52990 * 8 7 6 10 10 C 1.31870 * 121.72642 * 359.74286 * 9 8 7 11 11 C 1.38206 * 120.76638 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.21282 * 120.00069 * 114.99802 * 12 2 1 14 14 N 1.34770 * 119.99967 * 295.00335 * 12 2 1 15 15 C 1.46504 * 120.00306 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.46568 * 34.99585 * 15 14 12 17 17 C 1.53001 * 109.47073 * 274.99911 * 15 14 12 18 18 C 1.52997 * 109.47247 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47029 * 59.99741 * 18 17 15 20 20 C 1.52998 * 109.47647 * 300.00062 * 19 18 17 21 21 C 1.52997 * 109.46957 * 59.99894 * 20 19 18 22 22 H 1.08996 * 109.47135 * 60.00241 * 21 20 19 23 23 N 1.46505 * 109.47313 * 180.02562 * 21 20 19 24 24 C 1.36934 * 119.99500 * 275.00110 * 23 21 20 25 25 H 1.08001 * 120.00131 * 0.02562 * 24 23 21 26 26 C 1.38814 * 119.99875 * 179.97438 * 24 23 21 27 27 N 1.31620 * 120.00060 * 180.02562 * 26 24 23 28 28 Si 1.86801 * 119.99936 * 359.97438 * 26 24 23 29 29 H 1.48502 * 109.47027 * 89.99932 * 28 26 24 30 30 H 1.48500 * 109.47253 * 210.00115 * 28 26 24 31 31 H 1.48502 * 109.47065 * 330.00506 * 28 26 24 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 35 35 H 1.09000 * 109.47064 * 299.99806 * 5 4 2 36 36 H 1.09007 * 109.47276 * 60.00167 * 5 4 2 37 37 H 1.08000 * 120.41844 * 0.02562 * 7 6 5 38 38 H 1.07994 * 119.61574 * 180.25454 * 8 7 6 39 39 H 1.08004 * 119.61607 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.41693 * 180.02562 * 11 10 9 41 41 H 0.97005 * 120.00514 * 0.02562 * 14 12 2 42 42 H 1.09006 * 109.47070 * 299.99962 * 17 15 14 43 43 H 1.09004 * 109.46818 * 59.99136 * 17 15 14 44 44 H 1.09004 * 109.47044 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.46641 * 299.99826 * 18 17 15 46 46 H 1.08998 * 109.47340 * 60.00513 * 19 18 17 47 47 H 1.09000 * 109.47020 * 180.02562 * 19 18 17 48 48 H 1.08996 * 109.47438 * 180.02562 * 20 19 18 49 49 H 1.09009 * 109.46636 * 300.00587 * 20 19 18 50 50 H 0.96997 * 120.00033 * 94.99655 * 23 21 20 51 51 H 0.97005 * 119.99526 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7015 -0.6283 -3.4609 7 6 4.0606 -0.8066 -3.6697 8 6 4.4831 -1.5611 -4.7478 9 7 3.6108 -2.0991 -5.5778 10 6 2.3114 -1.9458 -5.4133 11 6 1.8148 -1.2092 -4.3546 12 6 2.0323 -0.7104 1.2305 13 8 2.6529 -1.7467 1.1216 14 7 1.7918 -0.1942 2.4520 15 6 2.2806 -0.8845 3.6482 16 1 3.2409 -1.3520 3.4309 17 6 1.2733 -1.9581 4.0649 18 6 1.7840 -2.6794 5.3138 19 6 1.9541 -1.6707 6.4515 20 6 2.9615 -0.5971 6.0349 21 6 2.4508 0.1242 4.7860 22 1 1.4906 0.5918 5.0036 23 7 3.4156 1.1519 4.3867 24 6 3.3706 2.3936 4.9621 25 1 2.6241 2.6153 5.7106 26 6 4.2850 3.3672 4.5843 27 7 4.2421 4.5607 5.1377 28 14 5.5774 2.9832 3.2913 29 1 5.0445 3.3141 1.9453 30 1 6.7955 3.7910 3.5538 31 1 5.9194 1.5392 3.3469 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.2539 0.6546 -2.5588 36 1 2.9321 0.9513 -2.0450 37 1 4.7799 -0.3651 -2.9959 38 1 5.5398 -1.7082 -4.9149 39 1 1.6273 -2.4012 -6.1141 40 1 0.7495 -1.0877 -4.2251 41 1 1.2951 0.6344 2.5392 42 1 0.3128 -1.4905 4.2821 43 1 1.1523 -2.6769 3.2544 44 1 1.0665 -3.4446 5.6103 45 1 2.7442 -3.1470 5.0960 46 1 0.9939 -1.2031 6.6692 47 1 2.3184 -2.1845 7.3411 48 1 3.0830 0.1212 6.8456 49 1 3.9217 -1.0648 5.8172 50 1 4.0862 0.9526 3.7149 51 1 4.8809 5.2411 4.8733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228675241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:15 Heat of formation + Delta-G solvation = -46.041247 kcal Electronic energy + Delta-G solvation = -30894.522600 eV Core-core repulsion = 26793.679321 eV Total energy + Delta-G solvation = -4100.843278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.48645 -40.05091 -38.54006 -37.35826 -34.23186 -33.97389 -33.64540 -31.54136 -31.47443 -31.32087 -29.31613 -28.09372 -27.15679 -24.45157 -23.73069 -23.51841 -22.31150 -22.04800 -21.03488 -20.19962 -19.62822 -17.98512 -17.55285 -17.10593 -16.75122 -16.53404 -15.86789 -15.77961 -15.38759 -15.10287 -14.68061 -14.34041 -14.23075 -14.05676 -13.88636 -13.65749 -13.55949 -13.31516 -13.16136 -13.00857 -12.72694 -12.60163 -12.33512 -12.28042 -12.15070 -11.81336 -11.47489 -11.41869 -11.07087 -10.96492 -10.90788 -10.64135 -10.40633 -10.17745 -10.16578 -10.00663 -9.83523 -9.76079 -9.66909 -9.41442 -9.39102 -9.00658 -8.75444 -7.36529 -5.85934 -3.21810 0.85533 0.87978 2.76258 2.88527 3.29029 3.36398 3.39284 3.52323 3.87535 4.20124 4.40159 4.42889 4.50927 4.65833 4.77003 4.77199 4.85191 4.86070 4.93409 5.01982 5.02712 5.09353 5.20689 5.34315 5.36049 5.39021 5.42218 5.48592 5.51473 5.54984 5.63672 5.67648 5.73342 5.82587 5.86653 5.87575 6.01061 6.03557 6.20418 6.33154 6.35218 6.38786 6.41224 6.42841 6.69941 6.76897 6.79958 6.95752 7.68996 7.73210 7.89442 8.32943 8.41078 9.10993 9.83867 10.03589 11.32084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002939 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.318788 B = 9523.583913 C =11252.039232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 H 0.090 0.910 4 O -0.349 6.349 5 C 0.096 3.904 6 C -0.041 4.041 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.094 3.906 11 C -0.152 4.152 12 C 0.514 3.486 13 O -0.527 6.527 14 N -0.709 5.709 15 C 0.139 3.861 16 H 0.083 0.917 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.133 4.133 21 C 0.178 3.822 22 H 0.060 0.940 23 N -0.747 5.747 24 C -0.243 4.243 25 H 0.091 0.909 26 C 0.008 3.992 27 N -0.932 5.932 28 Si 0.880 3.120 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.277 1.277 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.404 0.596 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.056 0.944 50 H 0.361 0.639 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 -10.989 -13.737 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 H 0.108 0.892 4 O -0.267 6.267 5 C 0.019 3.981 6 C -0.050 4.050 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.193 5.193 10 C -0.063 4.063 11 C -0.172 4.172 12 C 0.299 3.701 13 O -0.403 6.403 14 N -0.360 5.360 15 C 0.034 3.966 16 H 0.101 0.899 17 C -0.162 4.162 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.174 4.174 21 C 0.068 3.932 22 H 0.078 0.922 23 N -0.389 5.389 24 C -0.373 4.373 25 H 0.109 0.891 26 C -0.188 4.188 27 N -0.579 5.579 28 Si 0.711 3.289 29 H -0.213 1.213 30 H -0.217 1.217 31 H -0.203 1.203 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.154 0.846 41 H 0.239 0.761 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.194 0.806 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.263 -12.189 -14.400 20.597 hybrid contribution 0.498 1.125 -0.056 1.231 sum -7.764 -11.064 -14.456 19.791 Atomic orbital electron populations 1.22216 0.93397 1.03694 1.03294 1.21971 0.95196 0.96720 0.85497 0.89224 1.88102 1.86668 1.33460 1.18454 1.21437 1.00247 0.91730 0.84646 1.19976 0.93682 0.96593 0.94712 1.22158 0.95971 0.99697 0.99052 1.22785 0.99740 0.93047 0.90470 1.67667 1.03384 1.19680 1.28554 1.22764 0.91990 0.95476 0.96084 1.22075 1.00970 0.98312 0.95821 1.20209 0.80008 0.85597 0.84305 1.90702 1.39752 1.23361 1.86491 1.45899 1.57459 1.27658 1.05013 1.21361 0.97721 0.93076 0.84436 0.89870 1.21861 0.98795 0.97763 0.97808 1.21483 1.01126 0.97754 0.94909 1.21575 0.99965 0.96826 0.97387 1.22184 0.98169 0.97314 0.99738 1.20446 0.93963 0.88066 0.90699 0.92164 1.42801 1.36723 1.10721 1.48651 1.19038 1.13796 0.86320 1.18124 0.89103 1.24641 0.98884 0.95746 0.99544 1.69695 1.38986 1.03653 1.45602 0.86624 0.82498 0.77540 0.82287 1.21269 1.21708 1.20336 0.91360 0.91136 0.90521 0.91633 0.91570 0.84459 0.82494 0.82597 0.84617 0.76068 0.91784 0.91850 0.92226 0.92010 0.92151 0.92492 0.91065 0.92557 0.80570 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.07 0.83 3.13 -27.88 -0.09 0.74 16 3 H 0.09 0.99 7.79 -51.93 -0.40 0.58 16 4 O -0.35 -4.73 9.51 -55.09 -0.52 -5.25 16 5 C 0.10 0.98 5.92 36.00 0.21 1.19 16 6 C -0.04 -0.44 5.55 -104.32 -0.58 -1.02 16 7 C -0.15 -1.57 9.82 -39.44 -0.39 -1.96 16 8 C 0.10 0.99 11.18 -17.55 -0.20 0.80 16 9 N -0.48 -5.48 10.36 -13.25 -0.14 -5.61 16 10 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 11 C -0.15 -1.41 9.82 -39.44 -0.39 -1.80 16 12 C 0.51 8.06 7.14 -10.99 -0.08 7.98 16 13 O -0.53 -10.34 16.17 -14.30 -0.23 -10.57 16 14 N -0.71 -10.38 4.87 -53.80 -0.26 -10.64 16 15 C 0.14 2.17 1.97 -67.93 -0.13 2.03 16 16 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 17 C -0.12 -1.62 5.49 -26.73 -0.15 -1.77 16 18 C -0.11 -1.40 5.92 -26.74 -0.16 -1.56 16 19 C -0.12 -1.53 5.92 -26.74 -0.16 -1.69 16 20 C -0.13 -2.17 5.50 -26.73 -0.15 -2.31 16 21 C 0.18 3.10 2.29 -67.93 -0.16 2.95 16 22 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 23 N -0.75 -16.29 4.76 -53.42 -0.25 -16.55 16 24 C -0.24 -6.35 10.41 -15.06 -0.16 -6.51 16 25 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 26 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 27 N -0.93 -28.09 13.97 55.49 0.78 -27.32 16 28 Si 0.88 21.56 27.73 -169.99 -4.71 16.84 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 31 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 32 H 0.07 0.50 7.87 -51.93 -0.41 0.10 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 35 H 0.07 0.51 7.83 -51.93 -0.41 0.11 16 36 H 0.07 0.64 8.04 -51.92 -0.42 0.22 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.40 5.38 8.39 -40.82 -0.34 5.03 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 50 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 415.39 15.07 6.26 6.26 Total: -1.00 -34.02 415.39 -10.11 -44.13 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -8.52 Total: 12.02 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.50 Total: -3.30 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.12 Total: -60.12 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.76 Total: -15.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.02 -10.11 -44.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228675241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.915 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds