Wall clock time and date at job start Wed Apr 1 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42898 * 109.47113 * 239.99870 * 2 1 3 5 5 C 1.42899 * 114.00025 * 90.00268 * 4 2 1 6 6 C 1.50698 * 109.47148 * 179.97438 * 5 4 2 7 7 C 1.38656 * 120.79103 * 269.71808 * 6 5 4 8 8 C 1.38207 * 119.16257 * 179.75677 * 7 6 5 9 9 N 1.31872 * 120.76102 * 0.52990 * 8 7 6 10 10 C 1.31870 * 121.72642 * 359.74286 * 9 8 7 11 11 C 1.38206 * 120.76638 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.21282 * 120.00069 * 114.99802 * 12 2 1 14 14 N 1.34770 * 119.99967 * 295.00335 * 12 2 1 15 15 C 1.46504 * 120.00306 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.46568 * 34.99585 * 15 14 12 17 17 C 1.53001 * 109.47073 * 274.99911 * 15 14 12 18 18 C 1.52997 * 109.47247 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47029 * 59.99741 * 18 17 15 20 20 C 1.52998 * 109.47647 * 300.00062 * 19 18 17 21 21 C 1.52997 * 109.46957 * 59.99894 * 20 19 18 22 22 H 1.08996 * 109.47135 * 60.00241 * 21 20 19 23 23 N 1.46505 * 109.47313 * 180.02562 * 21 20 19 24 24 C 1.36934 * 119.99500 * 275.00110 * 23 21 20 25 25 H 1.08001 * 120.00131 * 0.02562 * 24 23 21 26 26 C 1.38814 * 119.99875 * 179.97438 * 24 23 21 27 27 N 1.31620 * 120.00060 * 180.02562 * 26 24 23 28 28 Si 1.86801 * 119.99936 * 359.97438 * 26 24 23 29 29 H 1.48502 * 109.47027 * 89.99932 * 28 26 24 30 30 H 1.48500 * 109.47253 * 210.00115 * 28 26 24 31 31 H 1.48502 * 109.47065 * 330.00506 * 28 26 24 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 35 35 H 1.09000 * 109.47064 * 299.99806 * 5 4 2 36 36 H 1.09007 * 109.47276 * 60.00167 * 5 4 2 37 37 H 1.08000 * 120.41844 * 0.02562 * 7 6 5 38 38 H 1.07994 * 119.61574 * 180.25454 * 8 7 6 39 39 H 1.08004 * 119.61607 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.41693 * 180.02562 * 11 10 9 41 41 H 0.97005 * 120.00514 * 0.02562 * 14 12 2 42 42 H 1.09006 * 109.47070 * 299.99962 * 17 15 14 43 43 H 1.09004 * 109.46818 * 59.99136 * 17 15 14 44 44 H 1.09004 * 109.47044 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.46641 * 299.99826 * 18 17 15 46 46 H 1.08998 * 109.47340 * 60.00513 * 19 18 17 47 47 H 1.09000 * 109.47020 * 180.02562 * 19 18 17 48 48 H 1.08996 * 109.47438 * 180.02562 * 20 19 18 49 49 H 1.09009 * 109.46636 * 300.00587 * 20 19 18 50 50 H 0.96997 * 120.00033 * 94.99655 * 23 21 20 51 51 H 0.97005 * 119.99526 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7015 -0.6283 -3.4609 7 6 4.0606 -0.8066 -3.6697 8 6 4.4831 -1.5611 -4.7478 9 7 3.6108 -2.0991 -5.5778 10 6 2.3114 -1.9458 -5.4133 11 6 1.8148 -1.2092 -4.3546 12 6 2.0323 -0.7104 1.2305 13 8 2.6529 -1.7467 1.1216 14 7 1.7918 -0.1942 2.4520 15 6 2.2806 -0.8845 3.6482 16 1 3.2409 -1.3520 3.4309 17 6 1.2733 -1.9581 4.0649 18 6 1.7840 -2.6794 5.3138 19 6 1.9541 -1.6707 6.4515 20 6 2.9615 -0.5971 6.0349 21 6 2.4508 0.1242 4.7860 22 1 1.4906 0.5918 5.0036 23 7 3.4156 1.1519 4.3867 24 6 3.3706 2.3936 4.9621 25 1 2.6241 2.6153 5.7106 26 6 4.2850 3.3672 4.5843 27 7 4.2421 4.5607 5.1377 28 14 5.5774 2.9832 3.2913 29 1 5.0445 3.3141 1.9453 30 1 6.7955 3.7910 3.5538 31 1 5.9194 1.5392 3.3469 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.2539 0.6546 -2.5588 36 1 2.9321 0.9513 -2.0450 37 1 4.7799 -0.3651 -2.9959 38 1 5.5398 -1.7082 -4.9149 39 1 1.6273 -2.4012 -6.1141 40 1 0.7495 -1.0877 -4.2251 41 1 1.2951 0.6344 2.5392 42 1 0.3128 -1.4905 4.2821 43 1 1.1523 -2.6769 3.2544 44 1 1.0665 -3.4446 5.6103 45 1 2.7442 -3.1470 5.0960 46 1 0.9939 -1.2031 6.6692 47 1 2.3184 -2.1845 7.3411 48 1 3.0830 0.1212 6.8456 49 1 3.9217 -1.0648 5.8172 50 1 4.0862 0.9526 3.7149 51 1 4.8809 5.2411 4.8733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228675241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:14 Heat of formation + Delta-G solvation = -67.995605 kcal Electronic energy + Delta-G solvation = -30895.474612 eV Core-core repulsion = 26793.679321 eV Total energy + Delta-G solvation = -4101.795291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40001 -41.08033 -39.67421 -38.47804 -35.93984 -35.24358 -34.45365 -33.34313 -32.33941 -32.18865 -30.56498 -29.52709 -27.92318 -25.57461 -25.16522 -24.45515 -23.30495 -22.98621 -22.47356 -21.42157 -20.86116 -19.74671 -18.55788 -18.22772 -17.55497 -17.44731 -16.99367 -16.71293 -16.58753 -16.38193 -16.06480 -15.52403 -15.43083 -15.01906 -14.85898 -14.75515 -14.68793 -14.57953 -14.47496 -14.21686 -13.89689 -13.69597 -13.54332 -13.34762 -13.07885 -13.01715 -12.93604 -12.53506 -12.41601 -12.32472 -12.17693 -12.08516 -11.84016 -11.71678 -11.49283 -11.17607 -11.09625 -10.96802 -10.79790 -10.51521 -10.47971 -10.13070 -10.01996 -9.31355 -8.01865 -5.33719 0.09092 0.15592 1.32915 1.37196 1.42428 1.56751 1.86641 2.45628 2.67170 3.04650 3.29616 3.44456 3.53320 3.58404 3.71351 3.72608 3.78275 3.92189 4.04706 4.07343 4.10655 4.15719 4.18269 4.24334 4.34739 4.37826 4.40528 4.45894 4.56707 4.65310 4.66354 4.69613 4.78597 4.84327 4.93268 4.94534 4.99218 5.12069 5.18436 5.22063 5.27216 5.29603 5.30736 5.44869 5.51599 5.62466 5.71062 5.79567 5.94923 6.22209 6.56422 6.95552 7.06960 7.22240 7.83196 8.01387 9.19459 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002939 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.318788 B = 9523.583913 C =11252.039232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 H 0.103 0.897 4 O -0.376 6.376 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.165 4.165 8 C 0.085 3.915 9 N -0.508 5.508 10 C 0.086 3.914 11 C -0.151 4.151 12 C 0.510 3.490 13 O -0.573 6.573 14 N -0.703 5.703 15 C 0.146 3.854 16 H 0.057 0.943 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.130 4.130 21 C 0.177 3.823 22 H 0.065 0.935 23 N -0.749 5.749 24 C -0.214 4.214 25 H 0.067 0.933 26 C -0.054 4.054 27 N -0.980 5.980 28 Si 0.939 3.061 29 H -0.276 1.276 30 H -0.300 1.300 31 H -0.270 1.270 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.140 0.860 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.412 0.588 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.046 0.954 50 H 0.359 0.641 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -12.137 -14.689 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.121 0.879 4 O -0.295 6.295 5 C 0.018 3.982 6 C -0.067 4.067 7 C -0.185 4.185 8 C -0.071 4.071 9 N -0.218 5.218 10 C -0.070 4.070 11 C -0.171 4.171 12 C 0.296 3.704 13 O -0.452 6.452 14 N -0.355 5.355 15 C 0.041 3.959 16 H 0.076 0.924 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.171 4.171 21 C 0.068 3.932 22 H 0.083 0.917 23 N -0.391 5.391 24 C -0.345 4.345 25 H 0.085 0.915 26 C -0.246 4.246 27 N -0.631 5.631 28 Si 0.769 3.231 29 H -0.202 1.202 30 H -0.227 1.227 31 H -0.196 1.196 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.191 0.809 39 H 0.200 0.800 40 H 0.179 0.821 41 H 0.249 0.751 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.191 0.809 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.186 -13.370 -15.353 22.765 hybrid contribution 1.032 1.426 0.287 1.783 sum -9.155 -11.944 -15.065 21.294 Atomic orbital electron populations 1.22202 0.90749 1.03734 1.05147 1.22048 0.97059 0.96355 0.83707 0.87899 1.88063 1.87077 1.35007 1.19377 1.21607 1.01761 0.91321 0.83540 1.20226 0.93979 0.97167 0.95302 1.22327 0.96489 1.00202 0.99435 1.23096 1.00654 0.92959 0.90392 1.67700 1.04396 1.20471 1.29232 1.23276 0.91872 0.95245 0.96631 1.22368 1.02118 0.97448 0.95144 1.20909 0.79035 0.85131 0.85334 1.90676 1.41874 1.25514 1.87160 1.45885 1.57048 1.27796 1.04764 1.21199 0.97660 0.93008 0.84034 0.92435 1.21799 0.98693 0.96778 0.98073 1.21483 1.01527 0.97942 0.93967 1.21510 0.99263 0.95855 0.98194 1.22080 0.99005 0.97822 0.98183 1.20653 0.92961 0.87576 0.91975 0.91673 1.42832 1.37552 1.10322 1.48350 1.18991 1.11837 0.87535 1.16143 0.91469 1.25259 1.01412 0.95798 1.02160 1.69844 1.40405 1.04865 1.47968 0.85652 0.79752 0.77335 0.80377 1.20159 1.22732 1.19567 0.88926 0.91965 0.89255 0.88808 0.91432 0.84188 0.80859 0.79956 0.82113 0.75132 0.89982 0.92455 0.89559 0.92760 0.90987 0.90917 0.93251 0.93499 0.80892 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.07 1.58 3.13 29.85 0.09 1.67 16 3 H 0.10 2.04 7.79 -2.39 -0.02 2.02 16 4 O -0.38 -9.69 9.51 -129.99 -1.24 -10.93 16 5 C 0.09 1.74 5.92 71.24 0.42 2.17 16 6 C -0.06 -1.18 5.55 -19.67 -0.11 -1.28 16 7 C -0.16 -3.43 9.82 22.36 0.22 -3.22 16 8 C 0.09 1.73 11.18 84.68 0.95 2.68 16 9 N -0.51 -11.14 10.36 -195.84 -2.03 -13.17 16 10 C 0.09 1.51 11.18 84.68 0.95 2.46 16 11 C -0.15 -2.53 9.82 22.36 0.22 -2.31 16 12 C 0.51 15.51 7.14 87.66 0.63 16.14 16 13 O -0.57 -22.54 16.17 15.95 0.26 -22.28 16 14 N -0.70 -19.72 4.87 -442.53 -2.16 -21.88 16 15 C 0.15 4.42 1.97 44.99 0.09 4.50 16 16 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 17 C -0.11 -2.77 5.49 30.59 0.17 -2.60 16 18 C -0.11 -2.41 5.92 30.59 0.18 -2.23 16 19 C -0.11 -2.55 5.92 30.59 0.18 -2.37 16 20 C -0.13 -4.13 5.50 30.59 0.17 -3.97 16 21 C 0.18 5.99 2.29 44.99 0.10 6.09 16 22 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 23 N -0.75 -32.36 4.76 -322.94 -1.54 -33.89 16 24 C -0.21 -11.25 10.41 84.03 0.87 -10.37 16 25 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 26 C -0.05 -3.06 5.50 84.86 0.47 -2.60 16 27 N -0.98 -60.26 13.97 21.65 0.30 -59.96 16 28 Si 0.94 44.89 27.73 68.60 1.90 46.79 16 29 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 30 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 31 H -0.27 -12.39 6.52 99.48 0.65 -11.74 16 32 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.15 7.92 -2.39 -0.02 1.14 16 35 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 36 H 0.07 1.21 8.04 -2.38 -0.02 1.19 16 37 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.41 10.23 8.39 -92.70 -0.78 9.45 16 42 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.36 16.00 5.66 -92.71 -0.52 15.47 16 51 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -75.33 415.39 1.35 -73.97 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.43 Total: 38.41 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.28 Total: 2.93 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.42 Total: -128.90 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.98 Total: -33.21 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Total: -75.33 1.35 -73.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228675241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.978 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds