Wall clock time and date at job start Wed Apr 1 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50701 * 119.99804 * 2 1 4 4 O 1.42898 * 109.47227 * 134.99696 * 3 2 1 5 5 C 1.42898 * 114.00373 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46925 * 330.00308 * 5 4 3 7 7 C 1.52996 * 109.47218 * 89.99966 * 5 4 3 8 8 C 1.50700 * 109.47180 * 210.00360 * 5 4 3 9 9 O 1.21273 * 120.00144 * 354.99359 * 8 5 4 10 10 N 1.34784 * 119.99568 * 174.99847 * 8 5 4 11 11 C 1.46498 * 119.99802 * 179.97438 * 10 8 5 12 12 C 1.52992 * 109.47284 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47267 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.47169 * 180.02562 * 13 12 11 15 15 C 1.36940 * 119.99851 * 269.99907 * 14 13 12 16 16 H 1.07998 * 119.99943 * 323.20923 * 15 14 13 17 17 C 1.38811 * 120.00078 * 143.20528 * 15 14 13 18 18 N 1.31624 * 120.00078 * 156.79156 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 336.80153 * 17 15 14 20 20 H 1.48500 * 109.47060 * 95.40229 * 19 17 15 21 21 H 1.48499 * 109.46989 * 215.39973 * 19 17 15 22 22 H 1.48497 * 109.46978 * 335.40323 * 19 17 15 23 23 C 1.46498 * 120.00340 * 89.99761 * 14 13 12 24 24 C 1.50697 * 109.46810 * 88.79275 * 23 14 13 25 25 C 1.38672 * 120.42050 * 265.94531 * 24 23 14 26 26 C 1.38638 * 118.42024 * 180.24658 * 25 24 23 27 27 C 1.38228 * 119.15700 * 359.74878 * 26 25 24 28 28 N 1.31854 * 120.76570 * 0.02562 * 27 26 25 29 29 C 1.31876 * 121.72804 * 359.97438 * 28 27 26 30 30 H 1.08000 * 119.99732 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00150 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00150 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47100 * 14.99878 * 3 2 1 34 34 H 1.09004 * 109.46859 * 254.99981 * 3 2 1 35 35 H 1.09003 * 109.47041 * 300.00096 * 7 5 4 36 36 H 1.08993 * 109.47184 * 60.00076 * 7 5 4 37 37 H 1.08999 * 109.47198 * 180.02562 * 7 5 4 38 38 H 0.97004 * 120.00010 * 359.97438 * 10 8 5 39 39 H 1.09001 * 109.47096 * 59.99854 * 11 10 8 40 40 H 1.09007 * 109.47118 * 300.00443 * 11 10 8 41 41 H 1.09001 * 109.47337 * 59.99801 * 12 11 10 42 42 H 1.09007 * 109.47241 * 300.00167 * 12 11 10 43 43 H 1.09002 * 109.47168 * 60.00161 * 13 12 11 44 44 H 1.08998 * 109.47172 * 299.99919 * 13 12 11 45 45 H 0.96993 * 119.99847 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.46639 * 328.79627 * 23 14 13 47 47 H 1.08990 * 109.47156 * 208.79744 * 23 14 13 48 48 H 1.07994 * 120.79241 * 359.97011 * 25 24 23 49 49 H 1.07993 * 120.42078 * 179.73014 * 26 25 24 50 50 H 1.08000 * 119.61198 * 180.02562 * 27 26 25 51 51 H 1.08005 * 119.62113 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4350 1.0321 6 1 3.9137 2.9311 0.0615 7 6 3.3042 3.3716 2.0802 8 6 5.3206 2.0854 1.4253 9 8 5.6060 0.9408 1.7067 10 7 6.2664 3.0449 1.4642 11 6 7.6391 2.7052 1.8469 12 6 8.5053 3.9657 1.8113 13 6 9.9390 3.6108 2.2104 14 7 10.7683 4.8181 2.1768 15 6 11.4196 5.1696 1.0247 16 1 11.8372 4.4054 0.3858 17 6 11.5431 6.5079 0.6778 18 7 12.5107 6.8926 -0.1273 19 14 10.3361 7.7632 1.3539 20 1 10.9109 8.3995 2.5663 21 1 10.0752 8.8026 0.3259 22 1 9.0629 7.0854 1.7069 23 6 10.9009 5.6493 3.3759 24 6 12.0559 5.1523 4.2064 25 6 11.8421 4.2509 5.2383 26 6 12.9338 3.8250 5.9792 27 6 14.1908 4.3056 5.6635 28 7 14.3573 5.1588 4.6721 29 6 13.3421 5.5854 3.9464 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4868 -0.9927 35 1 2.2827 3.6244 1.7958 36 1 3.2988 2.8755 3.0507 37 1 3.9002 4.2822 2.1405 38 1 6.0381 3.9603 1.2387 39 1 8.0391 1.9691 1.1495 40 1 7.6431 2.2903 2.8549 41 1 8.1051 4.7015 2.5089 42 1 8.5012 4.3810 0.8034 43 1 10.3390 2.8754 1.5124 44 1 9.9434 3.1954 3.2181 45 1 12.5971 7.8279 -0.3694 46 1 9.9824 5.5931 3.9602 47 1 11.0824 6.6833 3.0829 48 1 10.8483 3.8926 5.4624 49 1 12.8037 3.1269 6.7928 50 1 15.0464 3.9784 6.2355 51 1 13.5174 6.2849 3.1424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230931735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:35 Heat of formation + Delta-G solvation = -25.727474 kcal Electronic energy + Delta-G solvation = -29677.970038 eV Core-core repulsion = 25578.007631 eV Total energy + Delta-G solvation = -4099.962407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05820 -40.96026 -38.95976 -38.19888 -36.28898 -35.00239 -34.07848 -33.75919 -32.81443 -32.25278 -31.10306 -27.68845 -27.38276 -27.10937 -25.10025 -24.30671 -23.69397 -22.99645 -21.96672 -21.31351 -20.78788 -18.93454 -18.30086 -18.15648 -17.81787 -17.52755 -17.09453 -16.85533 -16.54930 -16.40744 -16.01680 -15.95637 -15.63734 -15.23160 -14.95397 -14.82573 -14.52325 -14.32982 -14.29238 -14.18001 -13.85172 -13.74537 -13.46287 -13.37999 -13.13988 -13.01049 -12.85107 -12.73888 -12.52850 -12.48678 -12.25186 -11.90201 -11.85349 -11.59813 -11.49835 -11.23818 -10.68534 -10.62587 -10.57815 -10.29874 -10.26141 -10.11369 -9.80254 -8.82824 -8.16959 -5.55099 0.31284 0.48456 1.19131 1.34688 1.44010 1.54945 1.55107 1.93705 2.44327 2.87618 2.97738 3.16559 3.43971 3.65000 3.67170 3.89312 3.99021 4.01159 4.08144 4.09206 4.14364 4.20468 4.21263 4.25894 4.28488 4.40662 4.48507 4.56580 4.58907 4.64129 4.69684 4.74583 4.79446 4.85714 4.91585 4.96453 4.98960 4.99708 5.18457 5.29201 5.30204 5.38141 5.49300 5.51359 5.65492 5.69499 5.91598 5.97861 6.09273 6.21033 6.54576 6.97365 7.16621 7.20285 7.62882 8.03329 9.02298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002080 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.894331 B =13458.548579 C =14750.695426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.081 3.919 4 O -0.387 6.387 5 C 0.071 3.929 6 H 0.114 0.886 7 C -0.164 4.164 8 C 0.507 3.493 9 O -0.576 6.576 10 N -0.713 5.713 11 C 0.131 3.869 12 C -0.134 4.134 13 C 0.152 3.848 14 N -0.601 5.601 15 C -0.251 4.251 16 H 0.033 0.967 17 C -0.016 4.016 18 N -0.945 5.945 19 Si 0.935 3.065 20 H -0.281 1.281 21 H -0.314 1.314 22 H -0.235 1.235 23 C 0.170 3.830 24 C -0.145 4.145 25 C -0.073 4.073 26 C -0.165 4.165 27 C 0.071 3.929 28 N -0.521 5.521 29 C 0.092 3.908 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.261 0.739 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.160 0.840 49 H 0.171 0.829 50 H 0.178 0.822 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.727 -6.214 8.180 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.196 4.196 3 C 0.006 3.994 4 O -0.306 6.306 5 C 0.010 3.990 6 H 0.132 0.868 7 C -0.222 4.222 8 C 0.293 3.707 9 O -0.455 6.455 10 N -0.367 5.367 11 C 0.007 3.993 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.322 5.322 15 C -0.381 4.381 16 H 0.051 0.949 17 C -0.213 4.213 18 N -0.589 5.589 19 Si 0.764 3.236 20 H -0.209 1.209 21 H -0.243 1.243 22 H -0.158 1.158 23 C 0.045 3.955 24 C -0.149 4.149 25 C -0.099 4.099 26 C -0.184 4.184 27 C -0.087 4.087 28 N -0.230 5.230 29 C -0.064 4.064 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.177 0.823 49 H 0.189 0.811 50 H 0.195 0.805 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.591 -6.781 8.183 23.172 hybrid contribution -0.512 1.059 -0.673 1.356 sum -21.103 -5.722 7.510 23.119 Atomic orbital electron populations 1.24060 0.94832 1.03585 0.97544 1.22767 0.96379 0.97905 1.02595 1.21853 0.88611 0.96847 0.92102 1.88044 1.44942 1.36454 1.61150 1.22038 0.87462 0.87284 1.02217 0.86808 1.22223 1.03115 0.98692 0.98138 1.21034 0.87772 0.84917 0.76928 1.90692 1.82849 1.22121 1.49812 1.45928 1.09233 1.12170 1.69346 1.21218 0.80307 0.97422 1.00347 1.22221 0.96280 0.96450 1.02505 1.20890 0.88596 0.87853 0.99971 1.44132 1.53632 1.28239 1.06186 1.18498 1.28441 0.91250 0.99926 0.94938 1.26040 0.98265 0.99463 0.97517 1.70037 1.31430 1.16837 1.40573 0.85998 0.82676 0.78748 0.76226 1.20888 1.24325 1.15787 1.20257 0.94384 0.93937 0.86919 1.21806 0.97329 0.98962 0.96845 1.21805 1.01068 0.94154 0.92920 1.22465 0.92851 1.01462 1.01659 1.23265 0.98534 0.93114 0.93744 1.67596 1.35532 1.12857 1.07026 1.22378 0.89301 0.98281 0.96479 0.86728 0.86779 0.87942 0.90339 0.91452 0.89252 0.92615 0.88955 0.74812 0.92934 0.91288 0.90763 0.92516 0.94222 0.91172 0.92960 0.89346 0.94045 0.82281 0.81134 0.80453 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 14.31 67.77 0.97 -0.81 16 2 C -0.18 -2.79 9.89 25.64 0.25 -2.54 16 3 C 0.08 1.24 6.16 71.24 0.44 1.68 16 4 O -0.39 -8.83 9.51 -129.99 -1.24 -10.06 16 5 C 0.07 1.27 3.13 29.85 0.09 1.36 16 6 H 0.11 1.37 7.79 -2.38 -0.02 1.35 16 7 C -0.16 -2.03 9.48 71.98 0.68 -1.35 16 8 C 0.51 12.91 7.18 87.66 0.63 13.54 16 9 O -0.58 -20.66 16.51 15.98 0.26 -20.40 16 10 N -0.71 -15.28 5.52 -463.06 -2.55 -17.83 16 11 C 0.13 3.29 5.67 86.38 0.49 3.78 16 12 C -0.13 -3.71 5.65 30.59 0.17 -3.54 16 13 C 0.15 5.04 5.67 86.38 0.49 5.53 16 14 N -0.60 -24.91 2.07 -706.36 -1.46 -26.38 16 15 C -0.25 -13.26 9.91 84.03 0.83 -12.42 16 16 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 17 C -0.02 -0.88 5.29 84.86 0.45 -0.43 16 18 N -0.95 -57.23 13.97 21.65 0.30 -56.93 16 19 Si 0.94 42.15 25.07 68.60 1.72 43.87 16 20 H -0.28 -12.42 6.66 99.48 0.66 -11.76 16 21 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 23 C 0.17 6.37 4.63 85.63 0.40 6.76 16 24 C -0.14 -5.24 5.48 -19.77 -0.11 -5.35 16 25 C -0.07 -1.99 9.85 22.47 0.22 -1.77 16 26 C -0.17 -3.96 10.11 22.36 0.23 -3.74 16 27 C 0.07 2.05 11.18 84.69 0.95 3.00 16 28 N -0.52 -20.19 10.36 -195.84 -2.03 -22.22 16 29 C 0.09 3.88 10.88 84.67 0.92 4.80 16 30 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.11 0.85 7.90 -2.91 -0.02 0.83 16 32 H 0.10 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.08 0.80 7.59 -2.39 -0.02 0.78 16 34 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 35 H 0.09 0.76 7.87 -2.39 -0.02 0.74 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.80 7.93 -2.39 -0.02 0.78 16 38 H 0.42 6.42 8.26 -92.71 -0.77 5.66 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 44 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.09 2.62 8.01 -2.39 -0.02 2.61 16 47 H 0.04 1.76 3.26 -2.39 -0.01 1.75 16 48 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 49 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 50 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 51 H 0.12 5.71 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -78.36 426.58 3.20 -75.16 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.10 Total: 26.27 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 8.11 Total: 8.51 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.75 Total: -123.36 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.97 Total: -30.46 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.72 Total: 43.87 kcal Total: -78.36 3.20 -75.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230931735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.434 kcal (2) G-P(sol) polarization free energy of solvation -78.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds