Wall clock time and date at job start Wed Apr 1 2020 05:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99812 * 2 1 4 4 O 1.42891 * 109.47141 * 134.99817 * 3 2 1 5 5 C 1.42902 * 114.00055 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47378 * 29.99634 * 5 4 3 7 7 C 1.53011 * 109.46877 * 269.99955 * 5 4 3 8 8 C 1.50700 * 109.47192 * 150.00131 * 5 4 3 9 9 O 1.21273 * 120.00144 * 4.99484 * 8 5 4 10 10 N 1.34784 * 119.99568 * 184.99972 * 8 5 4 11 11 C 1.46498 * 119.99802 * 179.97438 * 10 8 5 12 12 C 1.52992 * 109.47284 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47267 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.47169 * 180.02562 * 13 12 11 15 15 C 1.36940 * 119.99851 * 269.99907 * 14 13 12 16 16 H 1.07998 * 119.99943 * 323.20923 * 15 14 13 17 17 C 1.38811 * 120.00078 * 143.20528 * 15 14 13 18 18 N 1.31624 * 120.00078 * 156.79156 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 336.80153 * 17 15 14 20 20 H 1.48500 * 109.47060 * 95.40229 * 19 17 15 21 21 H 1.48499 * 109.46989 * 215.39973 * 19 17 15 22 22 H 1.48497 * 109.46978 * 335.40323 * 19 17 15 23 23 C 1.46498 * 120.00340 * 89.99761 * 14 13 12 24 24 C 1.50697 * 109.46810 * 88.79275 * 23 14 13 25 25 C 1.38672 * 120.42050 * 265.94531 * 24 23 14 26 26 C 1.38638 * 118.42024 * 180.24658 * 25 24 23 27 27 C 1.38228 * 119.15700 * 359.74878 * 26 25 24 28 28 N 1.31854 * 120.76570 * 0.02562 * 27 26 25 29 29 C 1.31876 * 121.72804 * 359.97438 * 28 27 26 30 30 H 1.07994 * 120.00562 * 0.02562 * 1 2 3 31 31 H 1.08011 * 119.99783 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.00122 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47123 * 14.99278 * 3 2 1 34 34 H 1.09004 * 109.46453 * 255.00036 * 3 2 1 35 35 H 1.09000 * 109.46855 * 300.00000 * 7 5 4 36 36 H 1.08993 * 109.46949 * 59.99720 * 7 5 4 37 37 H 1.09003 * 109.46951 * 179.97438 * 7 5 4 38 38 H 0.97004 * 120.00010 * 359.97438 * 10 8 5 39 39 H 1.09001 * 109.47096 * 59.99854 * 11 10 8 40 40 H 1.09007 * 109.47118 * 300.00443 * 11 10 8 41 41 H 1.09001 * 109.47337 * 59.99801 * 12 11 10 42 42 H 1.09007 * 109.47241 * 300.00167 * 12 11 10 43 43 H 1.09002 * 109.47168 * 60.00161 * 13 12 11 44 44 H 1.08998 * 109.47172 * 299.99919 * 13 12 11 45 45 H 0.96993 * 119.99847 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.46639 * 328.79627 * 23 14 13 47 47 H 1.08990 * 109.47156 * 208.79744 * 23 14 13 48 48 H 1.07994 * 120.79241 * 359.97011 * 25 24 23 49 49 H 1.07993 * 120.42078 * 179.73014 * 26 25 24 50 50 H 1.08000 * 119.61198 * 180.02562 * 27 26 25 51 51 H 1.08005 * 119.62113 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9083 2.4350 1.0320 6 1 3.2844 3.2948 0.7879 7 6 5.0705 2.3503 0.0405 8 6 4.4505 2.5883 2.4297 9 8 4.2694 1.7135 3.2498 10 7 5.1368 3.6979 2.7683 11 6 5.6635 3.8473 4.1271 12 6 6.3949 5.1857 4.2463 13 6 6.9455 5.3414 5.6653 14 7 7.6454 6.6234 5.7796 15 6 8.9833 6.7005 5.4981 16 1 9.6394 5.8857 5.7663 17 6 9.4962 7.8260 4.8680 18 7 10.7710 8.1280 4.9952 19 14 8.3772 8.9122 3.8397 20 1 7.8890 10.0443 4.6676 21 1 9.1332 9.4402 2.6757 22 1 7.2200 8.1157 3.3585 23 6 6.9140 7.8228 6.1951 24 6 6.9403 7.9318 7.6979 25 6 5.9003 7.4177 8.4575 26 6 5.9646 7.5454 9.8365 27 6 7.0580 8.1717 10.4046 28 7 8.0312 8.6448 9.6510 29 6 8.0034 8.5412 8.3367 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1160 0.2658 34 1 2.4754 1.4867 -0.9927 35 1 5.6944 1.4905 0.2845 36 1 4.6783 2.2394 -0.9704 37 1 5.6665 3.2610 0.1007 38 1 5.2819 4.3975 2.1122 39 1 6.3570 3.0336 4.3394 40 1 4.8403 3.8185 4.8411 41 1 5.7010 5.9991 4.0341 42 1 7.2181 5.2148 3.5323 43 1 7.6395 4.5280 5.8770 44 1 6.1227 5.3122 6.3796 45 1 11.1293 8.9146 4.5552 46 1 5.8810 7.7548 5.8538 47 1 7.3836 8.7041 5.7585 48 1 5.0581 6.9334 7.9859 49 1 5.1704 7.1606 10.4589 50 1 7.1159 8.2748 11.4781 51 1 8.8189 8.9412 7.7523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230931736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:39 Heat of formation + Delta-G solvation = -4.649231 kcal Electronic energy + Delta-G solvation = -29691.801030 eV Core-core repulsion = 25592.752644 eV Total energy + Delta-G solvation = -4099.048386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.06850 -39.62046 -38.12620 -36.70163 -35.05679 -34.39702 -32.54222 -32.31038 -31.51401 -31.18241 -29.80662 -26.64080 -26.28085 -25.73844 -24.06291 -22.96578 -22.36078 -21.69341 -20.80673 -20.40888 -19.81558 -17.46241 -17.36838 -17.10170 -16.49279 -16.09164 -16.00772 -15.81054 -15.48784 -15.24878 -14.99122 -14.55669 -14.38182 -14.17042 -13.78568 -13.36520 -13.31922 -13.16826 -13.12018 -12.83346 -12.63331 -12.60477 -12.59080 -12.55157 -11.91957 -11.84197 -11.66964 -11.45257 -11.31489 -11.27013 -11.00358 -10.69002 -10.37959 -10.18669 -10.08321 -9.93382 -9.77603 -9.49917 -9.31958 -9.04901 -8.95686 -8.66398 -8.42376 -7.06650 -6.13852 -3.54881 1.64076 1.75346 1.77646 2.55166 2.79681 3.17928 3.33979 3.36701 3.70750 4.28196 4.37293 4.41887 4.57313 4.60531 4.75357 4.75553 4.87813 4.93231 4.96503 5.10812 5.11207 5.19803 5.24929 5.34635 5.35159 5.40138 5.47762 5.50336 5.55811 5.59837 5.72352 5.78173 5.85041 5.91994 6.01010 6.17860 6.19749 6.23304 6.24615 6.33149 6.40252 6.46163 6.55538 6.61029 6.75040 6.79922 6.86284 7.27047 7.46177 7.87770 8.17514 8.24692 8.51552 8.80370 9.54165 9.92827 11.00776 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.002139 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.955145 B =13084.671432 C =14596.424988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.070 3.930 6 H 0.085 0.915 7 C -0.171 4.171 8 C 0.511 3.489 9 O -0.522 6.522 10 N -0.725 5.725 11 C 0.122 3.878 12 C -0.152 4.152 13 C 0.156 3.844 14 N -0.593 5.593 15 C -0.270 4.270 16 H 0.080 0.920 17 C 0.039 3.961 18 N -0.889 5.889 19 Si 0.870 3.130 20 H -0.284 1.284 21 H -0.300 1.300 22 H -0.267 1.267 23 C 0.171 3.829 24 C -0.130 4.130 25 C -0.079 4.079 26 C -0.182 4.182 27 C 0.076 3.924 28 N -0.490 5.490 29 C 0.124 3.876 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.265 0.735 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.124 0.876 49 H 0.124 0.876 50 H 0.144 0.856 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 -7.296 -7.881 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.009 3.991 6 H 0.103 0.897 7 C -0.229 4.229 8 C 0.295 3.705 9 O -0.397 6.397 10 N -0.378 5.378 11 C -0.002 4.002 12 C -0.192 4.192 13 C 0.029 3.971 14 N -0.313 5.313 15 C -0.398 4.398 16 H 0.098 0.902 17 C -0.162 4.162 18 N -0.528 5.528 19 Si 0.699 3.301 20 H -0.212 1.212 21 H -0.228 1.228 22 H -0.191 1.191 23 C 0.045 3.955 24 C -0.135 4.135 25 C -0.106 4.106 26 C -0.202 4.202 27 C -0.081 4.081 28 N -0.198 5.198 29 C -0.034 4.034 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.142 0.858 50 H 0.162 0.838 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.730 -7.610 -6.823 19.605 hybrid contribution -1.204 0.803 -1.541 2.114 sum -17.934 -6.807 -8.363 20.926 Atomic orbital electron populations 1.23841 0.95524 1.02324 1.00059 1.22710 0.95623 0.98148 1.00203 1.21666 0.88719 0.96217 0.92527 1.88086 1.44125 1.34654 1.60242 1.21918 0.94036 0.89550 0.93616 0.89699 1.22245 0.97932 1.03901 0.98819 1.20321 0.78768 0.82232 0.89160 1.90721 1.56957 1.40491 1.51508 1.46067 1.56301 1.20649 1.14807 1.21463 0.97826 0.99014 0.81882 1.22497 0.99948 0.94131 1.02660 1.20790 0.95103 0.89119 0.92056 1.44108 1.07395 1.03728 1.76033 1.18773 0.81521 1.05736 1.33800 0.90208 1.25457 0.95129 0.97943 0.97704 1.69885 1.13491 1.26567 1.42897 0.87063 0.81409 0.80521 0.81065 1.21212 1.22784 1.19116 1.20221 0.95921 0.91882 0.87459 1.21912 0.94613 0.96934 1.00083 1.21412 0.98152 0.97463 0.93598 1.21976 1.00129 1.02476 0.95666 1.22578 0.90278 0.95618 0.99630 1.67687 1.27050 1.17932 1.07144 1.22794 0.96608 0.94342 0.89624 0.88431 0.87699 0.86417 0.92642 0.92100 0.90884 0.91267 0.90649 0.76594 0.91382 0.91827 0.92315 0.90682 0.92456 0.93978 0.92459 0.93100 0.91620 0.85818 0.85817 0.83819 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 14.31 29.01 0.42 -0.80 16 2 C -0.15 -1.21 9.89 -36.03 -0.36 -1.57 16 3 C 0.08 0.71 6.16 36.01 0.22 0.93 16 4 O -0.35 -4.21 9.51 -55.09 -0.52 -4.73 16 5 C 0.07 0.71 3.13 -27.88 -0.09 0.62 16 6 H 0.09 0.63 7.79 -51.93 -0.40 0.22 16 7 C -0.17 -1.38 9.48 37.16 0.35 -1.02 16 8 C 0.51 6.86 7.18 -10.98 -0.08 6.78 16 9 O -0.52 -9.41 16.51 -14.30 -0.24 -9.65 16 10 N -0.72 -8.58 5.52 -60.30 -0.33 -8.91 16 11 C 0.12 1.64 5.67 -4.05 -0.02 1.61 16 12 C -0.15 -2.28 5.65 -26.73 -0.15 -2.43 16 13 C 0.16 2.70 5.67 -4.04 -0.02 2.68 16 14 N -0.59 -12.43 2.07 -174.61 -0.36 -12.79 16 15 C -0.27 -6.82 9.91 -15.06 -0.15 -6.97 16 16 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 17 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 18 N -0.89 -25.26 13.97 55.49 0.78 -24.48 16 19 Si 0.87 19.99 25.07 -169.99 -4.26 15.73 16 20 H -0.28 -6.42 6.66 56.52 0.38 -6.05 16 21 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C 0.17 3.35 4.63 -5.20 -0.02 3.32 16 24 C -0.13 -2.45 5.48 -104.48 -0.57 -3.02 16 25 C -0.08 -1.25 9.85 -39.27 -0.39 -1.64 16 26 C -0.18 -2.62 10.11 -39.44 -0.40 -3.02 16 27 C 0.08 1.21 11.18 -17.55 -0.20 1.01 16 28 N -0.49 -9.46 10.36 -13.25 -0.14 -9.60 16 29 C 0.12 2.53 10.88 -17.55 -0.19 2.34 16 30 H 0.10 0.56 7.90 -52.49 -0.41 0.15 16 31 H 0.10 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.06 0.40 7.80 -51.93 -0.41 0.00 16 34 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 38 H 0.40 3.74 8.26 -40.82 -0.34 3.40 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 44 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.05 0.87 8.01 -51.93 -0.42 0.45 16 47 H 0.07 1.42 3.26 -51.93 -0.17 1.25 16 48 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 49 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 50 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 51 H 0.16 3.50 8.06 -52.48 -0.42 3.08 16 LS Contribution 426.58 15.07 6.43 6.43 Total: -1.00 -32.61 426.58 -8.84 -41.45 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.45 Total: 6.77 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.74 Total: -0.23 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.06 Total: -55.78 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.76 Total: -14.38 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.26 Total: 15.73 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -32.61 -8.84 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230931736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.803 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds