Wall clock time and date at job start Wed Apr 1 2020 05:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99812 * 2 1 4 4 O 1.42891 * 109.47141 * 134.99817 * 3 2 1 5 5 C 1.42902 * 114.00055 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47378 * 29.99634 * 5 4 3 7 7 C 1.53011 * 109.46877 * 269.99955 * 5 4 3 8 8 C 1.50700 * 109.47192 * 150.00131 * 5 4 3 9 9 O 1.21273 * 120.00144 * 4.99484 * 8 5 4 10 10 N 1.34784 * 119.99568 * 184.99972 * 8 5 4 11 11 C 1.46498 * 119.99802 * 179.97438 * 10 8 5 12 12 C 1.52992 * 109.47284 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47267 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.47169 * 180.02562 * 13 12 11 15 15 C 1.36940 * 119.99851 * 269.99907 * 14 13 12 16 16 H 1.07998 * 119.99943 * 323.20923 * 15 14 13 17 17 C 1.38811 * 120.00078 * 143.20528 * 15 14 13 18 18 N 1.31624 * 120.00078 * 156.79156 * 17 15 14 19 19 Si 1.86803 * 120.00018 * 336.80153 * 17 15 14 20 20 H 1.48500 * 109.47060 * 95.40229 * 19 17 15 21 21 H 1.48499 * 109.46989 * 215.39973 * 19 17 15 22 22 H 1.48497 * 109.46978 * 335.40323 * 19 17 15 23 23 C 1.46498 * 120.00340 * 89.99761 * 14 13 12 24 24 C 1.50697 * 109.46810 * 88.79275 * 23 14 13 25 25 C 1.38672 * 120.42050 * 265.94531 * 24 23 14 26 26 C 1.38638 * 118.42024 * 180.24658 * 25 24 23 27 27 C 1.38228 * 119.15700 * 359.74878 * 26 25 24 28 28 N 1.31854 * 120.76570 * 0.02562 * 27 26 25 29 29 C 1.31876 * 121.72804 * 359.97438 * 28 27 26 30 30 H 1.07994 * 120.00562 * 0.02562 * 1 2 3 31 31 H 1.08011 * 119.99783 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.00122 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47123 * 14.99278 * 3 2 1 34 34 H 1.09004 * 109.46453 * 255.00036 * 3 2 1 35 35 H 1.09000 * 109.46855 * 300.00000 * 7 5 4 36 36 H 1.08993 * 109.46949 * 59.99720 * 7 5 4 37 37 H 1.09003 * 109.46951 * 179.97438 * 7 5 4 38 38 H 0.97004 * 120.00010 * 359.97438 * 10 8 5 39 39 H 1.09001 * 109.47096 * 59.99854 * 11 10 8 40 40 H 1.09007 * 109.47118 * 300.00443 * 11 10 8 41 41 H 1.09001 * 109.47337 * 59.99801 * 12 11 10 42 42 H 1.09007 * 109.47241 * 300.00167 * 12 11 10 43 43 H 1.09002 * 109.47168 * 60.00161 * 13 12 11 44 44 H 1.08998 * 109.47172 * 299.99919 * 13 12 11 45 45 H 0.96993 * 119.99847 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.46639 * 328.79627 * 23 14 13 47 47 H 1.08990 * 109.47156 * 208.79744 * 23 14 13 48 48 H 1.07994 * 120.79241 * 359.97011 * 25 24 23 49 49 H 1.07993 * 120.42078 * 179.73014 * 26 25 24 50 50 H 1.08000 * 119.61198 * 180.02562 * 27 26 25 51 51 H 1.08005 * 119.62113 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9083 2.4350 1.0320 6 1 3.2844 3.2948 0.7879 7 6 5.0705 2.3503 0.0405 8 6 4.4505 2.5883 2.4297 9 8 4.2694 1.7135 3.2498 10 7 5.1368 3.6979 2.7683 11 6 5.6635 3.8473 4.1271 12 6 6.3949 5.1857 4.2463 13 6 6.9455 5.3414 5.6653 14 7 7.6454 6.6234 5.7796 15 6 8.9833 6.7005 5.4981 16 1 9.6394 5.8857 5.7663 17 6 9.4962 7.8260 4.8680 18 7 10.7710 8.1280 4.9952 19 14 8.3772 8.9122 3.8397 20 1 7.8890 10.0443 4.6676 21 1 9.1332 9.4402 2.6757 22 1 7.2200 8.1157 3.3585 23 6 6.9140 7.8228 6.1951 24 6 6.9403 7.9318 7.6979 25 6 5.9003 7.4177 8.4575 26 6 5.9646 7.5454 9.8365 27 6 7.0580 8.1717 10.4046 28 7 8.0312 8.6448 9.6510 29 6 8.0034 8.5412 8.3367 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1160 0.2658 34 1 2.4754 1.4867 -0.9927 35 1 5.6944 1.4905 0.2845 36 1 4.6783 2.2394 -0.9704 37 1 5.6665 3.2610 0.1007 38 1 5.2819 4.3975 2.1122 39 1 6.3570 3.0336 4.3394 40 1 4.8403 3.8185 4.8411 41 1 5.7010 5.9991 4.0341 42 1 7.2181 5.2148 3.5323 43 1 7.6395 4.5280 5.8770 44 1 6.1227 5.3122 6.3796 45 1 11.1293 8.9146 4.5552 46 1 5.8810 7.7548 5.8538 47 1 7.3836 8.7041 5.7585 48 1 5.0581 6.9334 7.9859 49 1 5.1704 7.1606 10.4589 50 1 7.1159 8.2748 11.4781 51 1 8.8189 8.9412 7.7523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230931736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:38 Heat of formation + Delta-G solvation = -25.710652 kcal Electronic energy + Delta-G solvation = -29692.714322 eV Core-core repulsion = 25592.752644 eV Total energy + Delta-G solvation = -4099.961678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05719 -40.96048 -38.95813 -38.19880 -36.28781 -35.00458 -34.07806 -33.75802 -32.81333 -32.24919 -31.10083 -27.68967 -27.39565 -27.11767 -25.08590 -24.30726 -23.69266 -22.99617 -21.96750 -21.32683 -20.77540 -18.93512 -18.30801 -18.15054 -17.82050 -17.53309 -16.92244 -16.83915 -16.75390 -16.49192 -16.01536 -15.90950 -15.56570 -15.24371 -14.92273 -14.82320 -14.62030 -14.31744 -14.28666 -13.99845 -13.85388 -13.76283 -13.47823 -13.36227 -13.19707 -13.11154 -12.86632 -12.73351 -12.53542 -12.48327 -12.25069 -11.90192 -11.85214 -11.59873 -11.49739 -11.10581 -10.76972 -10.68101 -10.57855 -10.29929 -10.20611 -10.11255 -9.80321 -8.82843 -8.16888 -5.55054 0.31213 0.48384 1.19805 1.34652 1.44021 1.54818 1.55112 1.93456 2.44360 2.87612 2.98398 3.16613 3.43997 3.65150 3.67134 3.89260 3.96019 4.01023 4.08080 4.11498 4.15538 4.20413 4.20602 4.25726 4.28458 4.40312 4.48447 4.57689 4.58831 4.64198 4.68168 4.74306 4.78339 4.85636 4.91526 4.96408 4.98200 4.99646 5.18096 5.29102 5.30265 5.38256 5.49347 5.51304 5.65391 5.70127 5.91597 5.97864 6.09575 6.21129 6.54757 6.97404 7.16586 7.20502 7.62917 8.03329 9.02381 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.002139 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.955145 B =13084.671432 C =14596.424988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C 0.081 3.919 4 O -0.387 6.387 5 C 0.073 3.927 6 H 0.119 0.881 7 C -0.167 4.167 8 C 0.507 3.493 9 O -0.576 6.576 10 N -0.713 5.713 11 C 0.131 3.869 12 C -0.134 4.134 13 C 0.152 3.848 14 N -0.601 5.601 15 C -0.251 4.251 16 H 0.033 0.967 17 C -0.016 4.016 18 N -0.945 5.945 19 Si 0.935 3.065 20 H -0.281 1.281 21 H -0.314 1.314 22 H -0.235 1.235 23 C 0.170 3.830 24 C -0.145 4.145 25 C -0.073 4.073 26 C -0.165 4.165 27 C 0.071 3.929 28 N -0.521 5.521 29 C 0.092 3.908 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.261 0.739 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.160 0.840 49 H 0.171 0.829 50 H 0.178 0.822 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.209 -7.199 -8.229 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.006 3.994 4 O -0.306 6.306 5 C 0.012 3.988 6 H 0.137 0.863 7 C -0.225 4.225 8 C 0.293 3.707 9 O -0.455 6.455 10 N -0.367 5.367 11 C 0.007 3.993 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.322 5.322 15 C -0.381 4.381 16 H 0.051 0.949 17 C -0.213 4.213 18 N -0.589 5.589 19 Si 0.764 3.236 20 H -0.209 1.209 21 H -0.243 1.243 22 H -0.158 1.158 23 C 0.045 3.955 24 C -0.150 4.150 25 C -0.100 4.100 26 C -0.184 4.184 27 C -0.087 4.087 28 N -0.230 5.230 29 C -0.064 4.064 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.252 0.748 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.177 0.823 49 H 0.189 0.811 50 H 0.195 0.805 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.451 -7.504 -7.199 23.838 hybrid contribution 0.191 0.680 -1.213 1.404 sum -21.260 -6.825 -8.412 23.860 Atomic orbital electron populations 1.24057 0.95104 1.03448 0.98006 1.22793 0.96299 0.98083 1.02168 1.21857 0.88240 0.96578 0.92761 1.88050 1.45251 1.35764 1.61539 1.22015 0.94997 0.90367 0.91406 0.86338 1.22246 0.97160 1.03714 0.99347 1.21033 0.77966 0.81447 0.90214 1.90694 1.59119 1.42298 1.53344 1.45927 1.55435 1.20824 1.14494 1.21218 0.97522 0.97489 0.83067 1.22222 0.99568 0.95389 1.00284 1.20889 0.95279 0.86766 0.94367 1.44135 1.06010 1.05473 1.76591 1.18498 0.83306 1.03949 1.32363 0.94938 1.26039 0.96279 0.99864 0.99091 1.70036 1.15981 1.27827 1.45031 0.85998 0.80107 0.79046 0.78496 1.20888 1.24315 1.15801 1.20257 0.97076 0.90024 0.88137 1.21808 0.95358 0.98037 0.99754 1.21805 0.97786 0.96174 0.94190 1.22466 1.00223 1.00166 0.95591 1.23266 0.89806 0.94575 1.01007 1.67596 1.29169 1.19383 1.06847 1.22378 0.96911 0.96789 0.90361 0.87208 0.86682 0.87336 0.91403 0.90239 0.92970 0.89097 0.89181 0.74814 0.92957 0.91263 0.90787 0.92493 0.94226 0.91171 0.92958 0.89349 0.94046 0.82273 0.81129 0.80451 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 14.31 67.78 0.97 -0.98 16 2 C -0.18 -2.66 9.89 25.65 0.25 -2.40 16 3 C 0.08 1.19 6.16 71.24 0.44 1.63 16 4 O -0.39 -8.72 9.51 -129.99 -1.24 -9.96 16 5 C 0.07 1.30 3.13 29.85 0.09 1.39 16 6 H 0.12 1.28 7.79 -2.39 -0.02 1.26 16 7 C -0.17 -2.30 9.48 71.99 0.68 -1.62 16 8 C 0.51 12.87 7.18 87.66 0.63 13.50 16 9 O -0.58 -20.65 16.51 15.98 0.26 -20.39 16 10 N -0.71 -15.25 5.52 -463.06 -2.55 -17.81 16 11 C 0.13 3.29 5.67 86.38 0.49 3.78 16 12 C -0.13 -3.71 5.65 30.59 0.17 -3.54 16 13 C 0.15 5.05 5.67 86.38 0.49 5.54 16 14 N -0.60 -24.93 2.07 -706.36 -1.46 -26.40 16 15 C -0.25 -13.26 9.91 84.03 0.83 -12.43 16 16 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 17 C -0.02 -0.87 5.29 84.86 0.45 -0.42 16 18 N -0.95 -57.24 13.97 21.65 0.30 -56.94 16 19 Si 0.94 42.15 25.07 68.60 1.72 43.87 16 20 H -0.28 -12.41 6.66 99.48 0.66 -11.75 16 21 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 22 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 23 C 0.17 6.37 4.63 85.63 0.40 6.76 16 24 C -0.14 -5.24 5.48 -19.77 -0.11 -5.35 16 25 C -0.07 -1.99 9.85 22.47 0.22 -1.77 16 26 C -0.17 -3.96 10.11 22.36 0.23 -3.73 16 27 C 0.07 2.05 11.18 84.69 0.95 2.99 16 28 N -0.52 -20.17 10.36 -195.84 -2.03 -22.20 16 29 C 0.09 3.87 10.88 84.67 0.92 4.80 16 30 H 0.11 0.97 7.90 -2.91 -0.02 0.95 16 31 H 0.11 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.11 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.07 0.79 7.80 -2.39 -0.02 0.77 16 34 H 0.08 0.82 7.87 -2.39 -0.02 0.80 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.87 7.87 -2.39 -0.02 0.85 16 37 H 0.09 0.96 7.92 -2.39 -0.02 0.94 16 38 H 0.41 6.41 8.26 -92.71 -0.77 5.65 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 44 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 45 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.09 2.62 8.01 -2.39 -0.02 2.60 16 47 H 0.04 1.76 3.26 -2.39 -0.01 1.75 16 48 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 49 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 50 H 0.18 3.77 8.06 -2.91 -0.02 3.74 16 51 H 0.12 5.71 8.06 -2.91 -0.02 5.68 16 Total: -1.00 -78.39 426.58 3.20 -75.18 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.10 Total: 26.47 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 8.11 Total: 8.15 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -5.75 Total: -123.33 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.97 Total: -30.34 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.72 Total: 43.87 kcal Total: -78.39 3.20 -75.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230931736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.473 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds