Wall clock time and date at job start Wed Apr 1 2020 04:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46874 * 2 1 4 4 O 1.42901 * 109.46977 * 119.99089 * 2 1 3 5 5 C 1.35904 * 117.00369 * 275.10070 * 4 2 1 6 6 C 1.39142 * 120.47668 * 184.87008 * 5 4 2 7 7 C 1.38539 * 118.37607 * 179.71420 * 6 5 4 8 8 C 1.38260 * 119.21616 * 0.57945 * 7 6 5 9 9 N 1.31841 * 120.89151 * 359.68239 * 8 7 6 10 10 C 1.31843 * 121.77843 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.47176 * 239.99453 * 2 1 3 12 12 O 1.21280 * 119.99782 * 253.62415 * 11 2 1 13 13 N 1.34770 * 120.00329 * 73.35693 * 11 2 1 14 14 C 1.46934 * 120.62932 * 355.18637 * 13 11 2 15 15 C 1.53187 * 108.77661 * 126.36952 * 14 13 11 16 16 C 1.53044 * 109.31275 * 54.63779 * 15 14 13 17 17 C 1.53043 * 109.53368 * 298.63374 * 16 15 14 18 18 C 1.46921 * 120.63276 * 174.90990 * 13 11 2 19 19 H 1.08998 * 109.58708 * 113.84557 * 18 13 11 20 20 C 1.52995 * 109.58762 * 353.41377 * 18 13 11 21 21 N 1.46499 * 109.47252 * 181.48580 * 20 18 13 22 22 C 1.46502 * 120.00047 * 96.30414 * 21 20 18 23 23 C 1.36938 * 120.00247 * 276.30967 * 21 20 18 24 24 H 1.08003 * 119.99764 * 25.18871 * 23 21 20 25 25 C 1.38812 * 120.00033 * 205.18826 * 23 21 20 26 26 N 1.31623 * 120.00191 * 9.31555 * 25 23 21 27 27 Si 1.86796 * 119.99887 * 189.31126 * 25 23 21 28 28 H 1.48500 * 109.47403 * 5.00898 * 27 25 23 29 29 H 1.48500 * 109.47250 * 125.00518 * 27 25 23 30 30 H 1.48504 * 109.47305 * 245.00432 * 27 25 23 31 31 H 1.09002 * 109.47761 * 300.00255 * 1 2 3 32 32 H 1.08999 * 109.47502 * 60.00831 * 1 2 3 33 33 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 34 34 H 1.07994 * 120.80965 * 359.97438 * 6 5 4 35 35 H 1.07993 * 120.39082 * 180.30713 * 7 6 5 36 36 H 1.08004 * 119.55034 * 179.70253 * 8 7 6 37 37 H 1.07998 * 119.65981 * 180.02562 * 10 9 8 38 38 H 1.08999 * 109.58642 * 246.16016 * 14 13 11 39 39 H 1.09001 * 109.58407 * 6.57960 * 14 13 11 40 40 H 1.08996 * 109.49534 * 174.58530 * 15 14 13 41 41 H 1.09003 * 109.49602 * 294.65321 * 15 14 13 42 42 H 1.08993 * 109.46028 * 58.65143 * 16 15 14 43 43 H 1.08998 * 109.45675 * 178.62841 * 16 15 14 44 44 H 1.08999 * 109.49497 * 181.31688 * 17 16 15 45 45 H 1.09001 * 109.49889 * 301.37704 * 17 16 15 46 46 H 1.09003 * 109.47269 * 301.48721 * 20 18 13 47 47 H 1.08996 * 109.46863 * 61.48841 * 20 18 13 48 48 H 1.09005 * 109.46807 * 94.40947 * 22 21 20 49 49 H 1.08997 * 109.47259 * 214.40715 * 22 21 20 50 50 H 1.08996 * 109.47332 * 334.41722 * 22 21 20 51 51 H 0.96993 * 120.00052 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1105 0.0624 2.3047 6 6 2.6605 -0.4925 3.4561 7 6 2.7511 0.2987 4.5898 8 6 2.2847 1.5994 4.5440 9 7 1.7638 2.0932 3.4381 10 6 1.6647 1.3755 2.3366 11 6 2.0323 -0.7105 -1.2304 12 8 2.5137 -1.8197 -1.1360 13 7 1.9418 -0.1156 -2.4363 14 6 1.2619 1.1786 -2.5834 15 6 2.2119 2.1584 -3.2792 16 6 2.6926 1.5475 -4.5975 17 6 3.4574 0.2528 -4.3128 18 6 2.5264 -0.7459 -3.6277 19 1 1.7318 -1.0323 -4.3167 20 6 3.3221 -1.9855 -3.2140 21 7 3.9331 -2.5917 -4.3995 22 6 5.3215 -2.2804 -4.7485 23 6 3.2064 -3.4493 -5.1816 24 1 2.1286 -3.3822 -5.1993 25 6 3.8551 -4.4048 -5.9518 26 7 5.1456 -4.6111 -5.7952 27 14 2.8964 -5.3981 -7.2103 28 1 1.5004 -4.8963 -7.2777 29 1 3.5371 -5.2592 -8.5427 30 1 2.8896 -6.8284 -6.8110 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.0120 -1.5136 3.4646 35 1 3.1770 -0.0973 5.4997 36 1 2.3483 2.2195 5.4261 37 1 1.2324 1.8147 1.4497 38 1 0.3621 1.0523 -3.1854 39 1 0.9947 1.5648 -1.5998 40 1 1.6875 3.0923 -3.4809 41 1 3.0688 2.3541 -2.6345 42 1 1.8331 1.3296 -5.2314 43 1 3.3496 2.2528 -5.1063 44 1 3.8195 -0.1694 -5.2502 45 1 4.3033 0.4662 -3.6592 46 1 4.1028 -1.6978 -2.5098 47 1 2.6538 -2.7052 -2.7415 48 1 5.9807 -3.0405 -4.3291 49 1 5.4288 -2.2647 -5.8330 50 1 5.5880 -1.3045 -4.3427 51 1 5.5989 -5.2785 -6.3336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264742656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:50 Heat of formation + Delta-G solvation = 12.611237 kcal Electronic energy + Delta-G solvation = -31966.522498 eV Core-core repulsion = 27868.222583 eV Total energy + Delta-G solvation = -4098.299916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.22193 -40.28101 -38.48149 -37.04968 -35.51743 -33.51380 -32.65235 -32.19545 -31.27508 -30.39317 -29.91256 -26.88195 -25.75798 -25.07533 -24.37291 -23.93165 -23.18192 -22.27189 -20.82521 -20.39418 -19.05985 -18.62514 -17.27064 -17.02383 -16.64454 -16.11077 -15.96089 -15.67601 -14.99898 -14.81542 -14.71775 -14.43716 -14.24520 -13.99728 -13.77108 -13.50895 -13.33993 -13.30735 -13.07712 -12.80089 -12.76419 -12.70362 -12.42882 -12.30456 -11.99723 -11.58691 -11.50215 -11.28261 -10.90032 -10.88582 -10.74228 -10.69005 -10.45384 -10.34886 -10.06660 -10.02028 -9.86137 -9.78134 -9.75599 -8.89326 -8.64876 -8.45679 -8.30697 -6.57619 -5.62170 -3.10136 0.79786 1.00043 2.38200 2.68878 3.32485 3.42162 3.49102 3.50121 3.50937 4.11401 4.19891 4.38209 4.47744 4.58192 4.59491 4.60241 4.69664 4.77490 4.85024 4.96478 5.04101 5.19173 5.23311 5.28110 5.32276 5.38061 5.42196 5.52241 5.66964 5.68510 5.78060 5.81134 5.82556 5.89310 5.93808 6.07150 6.08171 6.18998 6.32354 6.41283 6.58358 6.76956 6.87756 6.94679 6.97389 7.31406 7.50152 7.55551 7.63121 7.85249 7.89860 8.31417 8.54885 9.35816 9.99371 10.49632 11.42671 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.002794 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.122949 B =10019.394667 C =10912.437805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 H 0.094 0.906 4 O -0.275 6.275 5 C 0.086 3.914 6 C -0.107 4.107 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.450 5.450 10 C 0.010 3.990 11 C 0.514 3.486 12 O -0.494 6.494 13 N -0.600 5.600 14 C 0.100 3.900 15 C -0.134 4.134 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.125 3.875 19 H 0.072 0.928 20 C 0.160 3.840 21 N -0.601 5.601 22 C 0.163 3.837 23 C -0.249 4.249 24 H 0.065 0.935 25 C 0.001 3.999 26 N -0.908 5.908 27 Si 0.902 3.098 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.028 0.972 49 H 0.039 0.961 50 H -0.004 1.004 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 17.425 15.512 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.003 3.997 3 H 0.111 0.889 4 O -0.186 6.186 5 C 0.038 3.962 6 C -0.134 4.134 7 C -0.150 4.150 8 C -0.104 4.104 9 N -0.159 5.159 10 C -0.147 4.147 11 C 0.299 3.701 12 O -0.367 6.367 13 N -0.336 5.336 14 C -0.023 4.023 15 C -0.173 4.173 16 C -0.158 4.158 17 C -0.159 4.159 18 C 0.021 3.979 19 H 0.090 0.910 20 C 0.032 3.968 21 N -0.325 5.325 22 C 0.018 3.982 23 C -0.379 4.379 24 H 0.083 0.917 25 C -0.197 4.197 26 N -0.554 5.554 27 Si 0.732 3.268 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.014 0.986 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.215 17.303 15.408 24.582 hybrid contribution -0.219 -1.108 -0.861 1.420 sum -8.435 16.195 14.547 23.346 Atomic orbital electron populations 1.22433 0.92514 1.04993 1.03827 1.22379 0.95955 0.96818 0.84540 0.88888 1.86266 1.80472 1.36481 1.15387 1.20170 0.96286 0.91893 0.87887 1.21033 0.99931 1.01811 0.90575 1.22045 0.99381 0.94990 0.98561 1.22660 0.97447 0.93919 0.96358 1.67520 1.12360 1.37012 0.99029 1.22948 1.02989 0.90817 0.97986 1.19852 0.80020 0.86627 0.83576 1.90864 1.42888 1.18185 1.84726 1.48232 1.56447 1.21277 1.07667 1.21893 0.95691 0.83736 1.01019 1.21926 0.99551 0.97870 0.97922 1.21556 1.00359 0.97619 0.96305 1.21843 0.97809 0.94208 1.02042 1.22386 0.96104 0.94899 0.84501 0.91048 1.21369 0.95848 0.91964 0.87582 1.44101 1.10702 1.50877 1.26783 1.20826 0.85309 0.93463 0.98614 1.19185 0.90517 1.08916 1.19266 0.91677 1.25080 0.96054 0.97466 1.01077 1.70068 1.08260 1.35404 1.41654 0.86224 0.79198 0.80177 0.81166 1.20432 1.21781 1.21749 0.90849 0.89706 0.90180 0.83667 0.83990 0.82546 0.82518 0.90925 0.90359 0.91022 0.91656 0.91902 0.92053 0.89377 0.92500 0.93928 0.90685 0.95390 0.94237 0.98568 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.81 37.16 0.33 -1.27 16 2 C 0.06 0.73 1.79 -27.88 -0.05 0.68 16 3 H 0.09 0.85 5.37 -51.93 -0.28 0.58 16 4 O -0.28 -3.75 9.38 -38.97 -0.37 -4.11 16 5 C 0.09 0.99 6.62 -39.07 -0.26 0.73 16 6 C -0.11 -1.08 10.13 -39.13 -0.40 -1.48 16 7 C -0.13 -1.03 10.11 -39.46 -0.40 -1.43 16 8 C 0.05 0.46 11.18 -17.54 -0.20 0.27 16 9 N -0.45 -4.82 10.36 -13.12 -0.14 -4.95 16 10 C 0.01 0.11 9.44 -17.37 -0.16 -0.06 16 11 C 0.51 8.03 6.88 -10.99 -0.08 7.96 16 12 O -0.49 -10.14 12.10 -13.97 -0.17 -10.31 16 13 N -0.60 -8.53 2.98 -165.48 -0.49 -9.03 16 14 C 0.10 0.96 5.31 -3.71 -0.02 0.94 16 15 C -0.13 -1.26 6.08 -26.61 -0.16 -1.43 16 16 C -0.12 -1.43 5.89 -26.69 -0.16 -1.59 16 17 C -0.12 -1.93 4.12 -26.83 -0.11 -2.04 16 18 C 0.13 2.23 3.16 -67.82 -0.21 2.01 16 19 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 20 C 0.16 3.62 3.58 -4.04 -0.01 3.60 16 21 N -0.60 -15.63 2.51 -181.12 -0.45 -16.08 16 22 C 0.16 4.14 7.90 59.85 0.47 4.61 16 23 C -0.25 -7.01 9.64 -15.06 -0.15 -7.16 16 24 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 25 C 0.00 0.03 5.17 -17.43 -0.09 -0.06 16 26 N -0.91 -27.32 10.65 55.49 0.59 -26.73 16 27 Si 0.90 22.37 29.56 -169.99 -5.03 17.34 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.07 0.54 6.95 -51.93 -0.36 0.18 16 32 H 0.08 0.59 6.02 -51.93 -0.31 0.28 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.16 1.30 5.46 -52.49 -0.29 1.01 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.55 4.68 -51.93 -0.24 0.31 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.62 7.00 -51.93 -0.36 1.26 16 45 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 46 H 0.04 1.00 7.14 -51.93 -0.37 0.63 16 47 H 0.08 1.89 6.16 -51.93 -0.32 1.57 16 48 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 49 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 50 H 0.00 -0.09 6.94 -51.93 -0.36 -0.45 16 51 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -34.65 390.31 -9.67 -44.32 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.85 Total: -0.62 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.65 Total: 4.30 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.49 Total: -56.80 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.53 Total: -14.42 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.65 -9.67 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264742656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.927 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds