Wall clock time and date at job start Wed Apr 1 2020 04:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46874 * 2 1 4 4 O 1.42901 * 109.46977 * 119.99089 * 2 1 3 5 5 C 1.35904 * 117.00369 * 275.10070 * 4 2 1 6 6 C 1.39142 * 120.47668 * 184.87008 * 5 4 2 7 7 C 1.38539 * 118.37607 * 179.71420 * 6 5 4 8 8 C 1.38260 * 119.21616 * 0.57945 * 7 6 5 9 9 N 1.31841 * 120.89151 * 359.68239 * 8 7 6 10 10 C 1.31843 * 121.77843 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.47176 * 239.99453 * 2 1 3 12 12 O 1.21280 * 119.99782 * 253.62415 * 11 2 1 13 13 N 1.34770 * 120.00329 * 73.35693 * 11 2 1 14 14 C 1.46934 * 120.62932 * 355.18637 * 13 11 2 15 15 C 1.53187 * 108.77661 * 126.36952 * 14 13 11 16 16 C 1.53044 * 109.31275 * 54.63779 * 15 14 13 17 17 C 1.53043 * 109.53368 * 298.63374 * 16 15 14 18 18 C 1.46921 * 120.63276 * 174.90990 * 13 11 2 19 19 H 1.08998 * 109.58708 * 113.84557 * 18 13 11 20 20 C 1.52995 * 109.58762 * 353.41377 * 18 13 11 21 21 N 1.46499 * 109.47252 * 181.48580 * 20 18 13 22 22 C 1.46502 * 120.00047 * 96.30414 * 21 20 18 23 23 C 1.36938 * 120.00247 * 276.30967 * 21 20 18 24 24 H 1.08003 * 119.99764 * 25.18871 * 23 21 20 25 25 C 1.38812 * 120.00033 * 205.18826 * 23 21 20 26 26 N 1.31623 * 120.00191 * 9.31555 * 25 23 21 27 27 Si 1.86796 * 119.99887 * 189.31126 * 25 23 21 28 28 H 1.48500 * 109.47403 * 5.00898 * 27 25 23 29 29 H 1.48500 * 109.47250 * 125.00518 * 27 25 23 30 30 H 1.48504 * 109.47305 * 245.00432 * 27 25 23 31 31 H 1.09002 * 109.47761 * 300.00255 * 1 2 3 32 32 H 1.08999 * 109.47502 * 60.00831 * 1 2 3 33 33 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 34 34 H 1.07994 * 120.80965 * 359.97438 * 6 5 4 35 35 H 1.07993 * 120.39082 * 180.30713 * 7 6 5 36 36 H 1.08004 * 119.55034 * 179.70253 * 8 7 6 37 37 H 1.07998 * 119.65981 * 180.02562 * 10 9 8 38 38 H 1.08999 * 109.58642 * 246.16016 * 14 13 11 39 39 H 1.09001 * 109.58407 * 6.57960 * 14 13 11 40 40 H 1.08996 * 109.49534 * 174.58530 * 15 14 13 41 41 H 1.09003 * 109.49602 * 294.65321 * 15 14 13 42 42 H 1.08993 * 109.46028 * 58.65143 * 16 15 14 43 43 H 1.08998 * 109.45675 * 178.62841 * 16 15 14 44 44 H 1.08999 * 109.49497 * 181.31688 * 17 16 15 45 45 H 1.09001 * 109.49889 * 301.37704 * 17 16 15 46 46 H 1.09003 * 109.47269 * 301.48721 * 20 18 13 47 47 H 1.08996 * 109.46863 * 61.48841 * 20 18 13 48 48 H 1.09005 * 109.46807 * 94.40947 * 22 21 20 49 49 H 1.08997 * 109.47259 * 214.40715 * 22 21 20 50 50 H 1.08996 * 109.47332 * 334.41722 * 22 21 20 51 51 H 0.96993 * 120.00052 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1105 0.0624 2.3047 6 6 2.6605 -0.4925 3.4561 7 6 2.7511 0.2987 4.5898 8 6 2.2847 1.5994 4.5440 9 7 1.7638 2.0932 3.4381 10 6 1.6647 1.3755 2.3366 11 6 2.0323 -0.7105 -1.2304 12 8 2.5137 -1.8197 -1.1360 13 7 1.9418 -0.1156 -2.4363 14 6 1.2619 1.1786 -2.5834 15 6 2.2119 2.1584 -3.2792 16 6 2.6926 1.5475 -4.5975 17 6 3.4574 0.2528 -4.3128 18 6 2.5264 -0.7459 -3.6277 19 1 1.7318 -1.0323 -4.3167 20 6 3.3221 -1.9855 -3.2140 21 7 3.9331 -2.5917 -4.3995 22 6 5.3215 -2.2804 -4.7485 23 6 3.2064 -3.4493 -5.1816 24 1 2.1286 -3.3822 -5.1993 25 6 3.8551 -4.4048 -5.9518 26 7 5.1456 -4.6111 -5.7952 27 14 2.8964 -5.3981 -7.2103 28 1 1.5004 -4.8963 -7.2777 29 1 3.5371 -5.2592 -8.5427 30 1 2.8896 -6.8284 -6.8110 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.0120 -1.5136 3.4646 35 1 3.1770 -0.0973 5.4997 36 1 2.3483 2.2195 5.4261 37 1 1.2324 1.8147 1.4497 38 1 0.3621 1.0523 -3.1854 39 1 0.9947 1.5648 -1.5998 40 1 1.6875 3.0923 -3.4809 41 1 3.0688 2.3541 -2.6345 42 1 1.8331 1.3296 -5.2314 43 1 3.3496 2.2528 -5.1063 44 1 3.8195 -0.1694 -5.2502 45 1 4.3033 0.4662 -3.6592 46 1 4.1028 -1.6978 -2.5098 47 1 2.6538 -2.7052 -2.7415 48 1 5.9807 -3.0405 -4.3291 49 1 5.4288 -2.2647 -5.8330 50 1 5.5880 -1.3045 -4.3427 51 1 5.5989 -5.2785 -6.3336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264742656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:49 Heat of formation + Delta-G solvation = -9.126131 kcal Electronic energy + Delta-G solvation = -31967.465101 eV Core-core repulsion = 27868.222583 eV Total energy + Delta-G solvation = -4099.242519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.17652 -41.30038 -39.40200 -38.26832 -37.35841 -34.67252 -33.74871 -33.46382 -32.46218 -31.48869 -31.04668 -28.46727 -27.73708 -26.31865 -25.32643 -24.71723 -24.18619 -23.57127 -22.36425 -21.62668 -20.18833 -19.49542 -18.78877 -18.13605 -17.69398 -17.26410 -17.17799 -16.79865 -16.51884 -16.05176 -15.55788 -15.52994 -15.49730 -15.36243 -14.88659 -14.75790 -14.50515 -14.38001 -14.25077 -14.12173 -13.96730 -13.90884 -13.51385 -13.14079 -13.06425 -13.00417 -12.80671 -12.75390 -12.54979 -12.48131 -12.29005 -12.07696 -11.96674 -11.86373 -11.73089 -11.56348 -11.42270 -10.71852 -10.67070 -10.50319 -10.21262 -9.58109 -9.48505 -8.71987 -7.82612 -5.34028 0.11314 0.25517 1.36688 1.43425 1.44704 1.53991 1.55565 2.33025 2.51755 2.80119 3.23251 3.31996 3.40797 3.65225 3.70618 3.74700 3.79421 3.92226 3.93653 3.97305 4.02046 4.08740 4.13342 4.35235 4.37283 4.42810 4.55473 4.58581 4.59817 4.61748 4.68540 4.81458 4.83166 4.96486 4.98766 5.04046 5.09160 5.13317 5.14195 5.19007 5.22045 5.28541 5.38671 5.48772 5.54152 5.60969 5.66012 5.71822 6.12146 6.32026 6.42346 6.93254 7.10282 7.18282 7.87037 8.33131 9.21231 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.002794 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.122949 B =10019.394667 C =10912.437805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 H 0.124 0.876 4 O -0.308 6.308 5 C 0.062 3.938 6 C -0.126 4.126 7 C -0.121 4.121 8 C 0.053 3.947 9 N -0.470 5.470 10 C 0.009 3.991 11 C 0.504 3.496 12 O -0.558 6.558 13 N -0.596 5.596 14 C 0.090 3.910 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.139 3.861 19 H 0.059 0.941 20 C 0.172 3.828 21 N -0.616 5.616 22 C 0.183 3.817 23 C -0.257 4.257 24 H 0.066 0.934 25 C -0.056 4.056 26 N -0.942 5.942 27 Si 0.972 3.028 28 H -0.265 1.265 29 H -0.287 1.287 30 H -0.294 1.294 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.142 0.858 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.177 0.823 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.026 0.974 47 H 0.043 0.957 48 H -0.006 1.006 49 H 0.021 0.979 50 H 0.025 0.975 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 20.921 16.502 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.141 0.859 4 O -0.220 6.220 5 C 0.015 3.985 6 C -0.152 4.152 7 C -0.140 4.140 8 C -0.105 4.105 9 N -0.179 5.179 10 C -0.148 4.148 11 C 0.292 3.708 12 O -0.435 6.435 13 N -0.331 5.331 14 C -0.030 4.030 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.152 4.152 18 C 0.034 3.966 19 H 0.077 0.923 20 C 0.046 3.954 21 N -0.341 5.341 22 C 0.038 3.962 23 C -0.387 4.387 24 H 0.084 0.916 25 C -0.251 4.251 26 N -0.589 5.589 27 Si 0.800 3.200 28 H -0.189 1.189 29 H -0.214 1.214 30 H -0.221 1.221 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.192 0.808 36 H 0.204 0.796 37 H 0.194 0.806 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.061 0.939 48 H 0.012 0.988 49 H 0.039 0.961 50 H 0.043 0.957 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.476 20.879 16.417 28.552 hybrid contribution 0.493 -2.175 -1.004 2.446 sum -9.983 18.704 15.413 26.212 Atomic orbital electron populations 1.22446 0.90201 1.04393 1.06043 1.22392 0.97421 0.96927 0.82055 0.85911 1.86223 1.81346 1.37998 1.16431 1.20391 0.97892 0.92675 0.87558 1.21315 1.00283 1.02289 0.91315 1.22384 0.98292 0.94540 0.98819 1.23247 0.96058 0.94428 0.96741 1.67587 1.13232 1.37425 0.99668 1.23176 1.02713 0.90161 0.98735 1.20728 0.78913 0.86126 0.85062 1.90837 1.45826 1.21101 1.85773 1.48250 1.55993 1.22736 1.06100 1.22353 0.95914 0.81154 1.03629 1.21935 0.99758 0.98926 0.96030 1.21530 1.00180 0.95343 0.98261 1.21708 0.97625 0.95931 0.99951 1.21747 0.95494 0.93627 0.85735 0.92263 1.21199 0.94966 0.93317 0.85916 1.44320 1.10848 1.51388 1.27507 1.20510 0.84759 0.93753 0.97177 1.19472 0.90806 1.09114 1.19335 0.91640 1.25914 0.97082 0.98757 1.03317 1.70253 1.09813 1.36155 1.42721 0.85135 0.78473 0.78026 0.78399 1.18886 1.21372 1.22074 0.88749 0.87199 0.92281 0.83965 0.80827 0.79559 0.80605 0.89126 0.86844 0.87153 0.91807 0.91449 0.90691 0.92384 0.93368 0.95593 0.93888 0.98811 0.96064 0.95665 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.81 71.98 0.63 -2.04 16 2 C 0.07 1.55 1.79 29.85 0.05 1.61 16 3 H 0.12 1.88 5.37 -2.39 -0.01 1.86 16 4 O -0.31 -8.48 9.38 -73.79 -0.69 -9.18 16 5 C 0.06 1.39 6.62 22.60 0.15 1.54 16 6 C -0.13 -2.48 10.13 22.56 0.23 -2.25 16 7 C -0.12 -1.66 10.11 22.35 0.23 -1.43 16 8 C 0.05 0.76 11.18 84.70 0.95 1.70 16 9 N -0.47 -8.83 10.36 -195.43 -2.02 -10.86 16 10 C 0.01 0.17 9.44 84.80 0.80 0.97 16 11 C 0.50 15.96 6.88 87.66 0.60 16.56 16 12 O -0.56 -24.51 12.10 15.64 0.19 -24.32 16 13 N -0.60 -16.45 2.98 -795.85 -2.37 -18.82 16 14 C 0.09 1.39 5.31 86.36 0.46 1.85 16 15 C -0.13 -1.86 6.08 30.67 0.19 -1.67 16 16 C -0.12 -2.43 5.89 30.62 0.18 -2.25 16 17 C -0.11 -3.62 4.12 30.53 0.13 -3.49 16 18 C 0.14 5.05 3.16 44.83 0.14 5.19 16 19 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 20 C 0.17 8.27 3.58 86.38 0.31 8.58 16 21 N -0.62 -33.75 2.51 -726.94 -1.82 -35.57 16 22 C 0.18 9.82 7.90 127.77 1.01 10.83 16 23 C -0.26 -15.03 9.64 84.03 0.81 -14.22 16 24 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 25 C -0.06 -3.33 5.17 84.86 0.44 -2.89 16 26 N -0.94 -59.01 10.65 21.65 0.23 -58.77 16 27 Si 0.97 47.09 29.56 68.60 2.03 49.12 16 28 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 30 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 31 H 0.09 1.09 6.95 -2.39 -0.02 1.08 16 32 H 0.11 1.10 6.02 -2.39 -0.01 1.08 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.18 2.30 5.46 -2.91 -0.02 2.29 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 0.99 4.68 -2.39 -0.01 0.98 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 2.19 7.00 -2.39 -0.02 2.17 16 45 H 0.05 1.59 7.94 -2.39 -0.02 1.57 16 46 H 0.03 1.30 7.14 -2.39 -0.02 1.29 16 47 H 0.04 2.35 6.16 -2.39 -0.01 2.33 16 48 H -0.01 -0.39 7.35 -2.38 -0.02 -0.40 16 49 H 0.02 1.18 7.34 -2.39 -0.02 1.16 16 50 H 0.02 1.17 6.94 -2.39 -0.02 1.15 16 51 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -82.61 390.31 3.77 -78.84 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.93 Total: 10.99 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.30 Total: 18.59 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -5.99 Total: -124.03 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.50 Total: -33.50 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -82.61 3.77 -78.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264742656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.711 kcal (2) G-P(sol) polarization free energy of solvation -82.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds