Wall clock time and date at job start Wed Apr 1 2020 04:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47295 * 2 1 4 4 O 1.42899 * 109.47026 * 119.99753 * 2 1 3 5 5 C 1.35912 * 117.00223 * 274.77710 * 4 2 1 6 6 C 1.39135 * 120.47115 * 3.72113 * 5 4 2 7 7 C 1.38536 * 118.37343 * 179.71400 * 6 5 4 8 8 C 1.38256 * 119.22227 * 0.58227 * 7 6 5 9 9 N 1.31847 * 120.88216 * 359.67907 * 8 7 6 10 10 C 1.31843 * 121.78433 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47222 * 239.99587 * 2 1 3 12 12 O 1.21285 * 120.00382 * 255.44067 * 11 2 1 13 13 N 1.34775 * 120.00176 * 75.43900 * 11 2 1 14 14 C 1.46927 * 120.62848 * 354.86835 * 13 11 2 15 15 C 1.53187 * 108.77634 * 233.60939 * 14 13 11 16 16 C 1.53034 * 109.31696 * 305.36532 * 15 14 13 17 17 C 1.53049 * 109.53722 * 61.36733 * 16 15 14 18 18 H 1.09000 * 109.49526 * 58.61468 * 17 16 15 19 19 C 1.52996 * 109.49852 * 178.68548 * 17 16 15 20 20 N 1.46499 * 109.46993 * 294.93245 * 19 17 16 21 21 C 1.46503 * 119.99949 * 269.99826 * 20 19 17 22 22 C 1.36937 * 119.99986 * 90.00384 * 20 19 17 23 23 H 1.08001 * 120.00159 * 334.21939 * 22 20 19 24 24 C 1.38805 * 120.00026 * 154.49927 * 22 20 19 25 25 N 1.31619 * 120.00134 * 349.71218 * 24 22 20 26 26 Si 1.86804 * 120.00192 * 169.71436 * 24 22 20 27 27 H 1.48499 * 109.46803 * 59.99867 * 26 24 22 28 28 H 1.48499 * 109.47140 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46916 * 299.99800 * 26 24 22 30 30 C 1.46928 * 120.60450 * 174.89499 * 13 11 2 31 31 H 1.08999 * 109.47249 * 185.96738 * 1 2 3 32 32 H 1.08997 * 109.47536 * 305.96851 * 1 2 3 33 33 H 1.09001 * 109.46915 * 65.96540 * 1 2 3 34 34 H 1.08007 * 120.81419 * 0.02562 * 6 5 4 35 35 H 1.08006 * 120.39003 * 180.30632 * 7 6 5 36 36 H 1.08002 * 119.55471 * 179.70100 * 8 7 6 37 37 H 1.07997 * 119.65472 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.58541 * 113.82623 * 14 13 11 39 39 H 1.08997 * 109.58682 * 353.39995 * 14 13 11 40 40 H 1.09007 * 109.49726 * 185.41057 * 15 14 13 41 41 H 1.09009 * 109.52405 * 65.33959 * 15 14 13 42 42 H 1.08995 * 109.45998 * 301.34576 * 16 15 14 43 43 H 1.08998 * 109.46481 * 181.38348 * 16 15 14 44 44 H 1.08996 * 109.46890 * 174.93193 * 19 17 16 45 45 H 1.09003 * 109.47200 * 54.93360 * 19 17 16 46 46 H 1.09000 * 109.47231 * 272.54557 * 21 20 19 47 47 H 1.09000 * 109.47127 * 32.55002 * 21 20 19 48 48 H 1.09005 * 109.46646 * 152.54866 * 21 20 19 49 49 H 0.97003 * 120.00191 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.62370 * 6.62140 * 30 13 11 51 51 H 1.09007 * 109.56282 * 246.18548 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1169 0.0638 2.3031 6 6 1.7031 1.3921 2.3253 7 6 1.8301 2.1015 3.5085 8 6 2.3708 1.4753 4.6162 9 7 2.7583 0.2163 4.5600 10 6 2.6492 -0.4952 3.4555 11 6 2.0323 -0.7105 -1.2304 12 8 2.4834 -1.8328 -1.1410 13 7 1.9803 -0.0988 -2.4302 14 6 1.3355 1.2135 -2.5741 15 6 0.2855 1.1277 -3.6862 16 6 0.9446 0.6077 -4.9657 17 6 1.5033 -0.7958 -4.7197 18 1 0.6964 -1.4591 -4.4081 19 6 2.1331 -1.3279 -6.0085 20 7 1.0928 -1.4995 -7.0256 21 6 0.3806 -2.7749 -7.1369 22 6 0.7863 -0.4679 -7.8723 23 1 0.9674 0.5524 -7.5681 24 6 0.2374 -0.7332 -9.1193 25 7 0.1979 -1.9687 -9.5716 26 14 -0.4452 0.6630 -10.1557 27 1 0.6346 1.6420 -10.4399 28 1 -0.9694 0.1198 -11.4345 29 1 -1.5428 1.3372 -9.4167 30 6 2.5670 -0.7325 -3.6189 31 1 -0.3634 -1.0221 0.1068 32 1 -0.3634 0.6036 0.8317 33 1 -0.3633 0.4186 -0.9386 34 1 1.2883 1.8572 1.4432 35 1 1.5146 3.1330 3.5636 36 1 2.4767 2.0248 5.5399 37 1 2.9780 -1.5239 3.4479 38 1 2.0839 1.9617 -2.8352 39 1 0.8528 1.4883 -1.6362 40 1 -0.1328 2.1176 -3.8688 41 1 -0.5103 0.4467 -3.3841 42 1 1.7559 1.2762 -5.2537 43 1 0.2050 0.5689 -5.7654 44 1 2.6096 -2.2879 -5.8105 45 1 2.8792 -0.6192 -6.3678 46 1 0.9345 -3.4442 -7.7952 47 1 0.2908 -3.2283 -6.1498 48 1 -0.6136 -2.6010 -7.5487 49 1 -0.1854 -2.1541 -10.4432 50 1 2.8965 -1.7414 -3.3709 51 1 3.4163 -0.1432 -3.9650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266466961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:14 Heat of formation + Delta-G solvation = -6.346337 kcal Electronic energy + Delta-G solvation = -31062.277771 eV Core-core repulsion = 26963.155793 eV Total energy + Delta-G solvation = -4099.121978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30848 -40.27312 -38.62009 -37.45323 -35.62010 -33.45800 -32.62668 -32.17888 -31.73183 -30.53583 -30.07618 -26.32225 -25.87119 -25.72359 -24.68601 -23.92713 -22.97144 -22.42487 -21.25808 -19.75523 -19.09460 -18.92501 -17.41891 -17.17158 -16.72920 -16.55611 -16.09448 -15.85050 -15.14593 -15.06896 -14.80658 -14.42767 -14.27089 -14.15757 -13.98578 -13.84750 -13.45656 -13.32891 -13.18901 -12.92377 -12.78730 -12.62509 -12.44712 -12.35967 -11.95603 -11.74851 -11.58015 -11.31810 -11.01507 -10.85241 -10.79497 -10.65041 -10.37000 -10.33132 -10.23214 -10.08016 -9.98529 -9.82798 -9.77139 -9.68773 -8.82164 -8.65736 -8.50792 -6.69279 -5.74894 -3.21756 0.72697 0.82650 2.19402 2.39810 3.16789 3.34879 3.40057 3.40224 3.41484 3.99882 4.13103 4.16991 4.32406 4.38803 4.46050 4.47252 4.66800 4.68074 4.80821 4.96815 5.03034 5.09019 5.15911 5.24538 5.30199 5.33796 5.41521 5.53829 5.59122 5.62733 5.63835 5.68269 5.83725 5.86748 5.93895 6.00050 6.06853 6.13995 6.30208 6.52073 6.56231 6.65249 6.79635 6.82563 6.95371 6.98087 7.26320 7.39627 7.57254 7.70598 7.79160 7.99474 8.41454 9.23424 9.86871 10.38325 11.31458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.002076 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.462851 B =13487.141123 C =14096.054606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.095 0.905 4 O -0.277 6.277 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.129 4.129 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.518 3.482 12 O -0.518 6.518 13 N -0.602 5.602 14 C 0.099 3.901 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.118 4.118 18 H 0.066 0.934 19 C 0.157 3.843 20 N -0.598 5.598 21 C 0.163 3.837 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.001 3.999 25 N -0.907 5.907 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.285 1.285 30 C 0.117 3.883 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.019 0.981 47 H -0.007 1.007 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.090 0.910 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 10.532 23.717 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.007 3.993 3 H 0.113 0.887 4 O -0.188 6.188 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.304 3.696 12 O -0.393 6.393 13 N -0.336 5.336 14 C -0.024 4.024 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.140 4.140 18 H 0.085 0.915 19 C 0.029 3.971 20 N -0.321 5.321 21 C 0.019 3.981 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.552 5.552 26 Si 0.732 3.268 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.211 1.211 30 C -0.004 4.004 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.011 0.989 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.788 9.228 24.267 26.024 hybrid contribution -0.973 1.504 -1.538 2.362 sum 0.814 10.732 22.729 25.148 Atomic orbital electron populations 1.22446 0.92260 1.05037 1.04115 1.22288 0.96127 0.96780 0.84113 0.88740 1.86264 1.80557 1.36439 1.15524 1.20285 0.96566 0.91126 0.88372 1.21784 1.03880 0.93891 1.00193 1.22013 0.98780 1.01211 0.92916 1.22697 0.97602 0.91167 0.98821 1.67758 1.14395 1.07558 1.25829 1.22284 0.98896 1.01049 0.85996 1.19894 0.79409 0.86473 0.83833 1.90742 1.45169 1.17967 1.85379 1.48056 1.57341 1.20429 1.07784 1.21975 0.96179 0.84295 0.99956 1.21973 0.97586 1.01757 0.96034 1.21619 1.01143 0.95436 0.96715 1.22229 0.97810 0.97670 0.96319 0.91542 1.20666 0.90855 0.97810 0.87763 1.43808 1.39516 1.12594 1.36143 1.20751 0.97160 0.86504 0.93723 1.19150 1.37773 0.87191 0.94190 0.91240 1.25112 1.01842 0.96201 0.96567 1.70044 1.48495 1.17791 1.18836 0.86382 0.78997 0.81636 0.79763 1.20957 1.21693 1.21117 1.21812 0.96015 0.99061 0.83559 0.90104 0.90778 0.89413 0.84160 0.84374 0.82459 0.81714 0.90997 0.90415 0.90964 0.91730 0.92637 0.88760 0.94514 0.93393 0.96259 0.98866 0.92948 0.93702 0.89211 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.80 37.16 0.33 -1.13 16 2 C 0.07 0.67 1.79 -27.89 -0.05 0.62 16 3 H 0.10 0.70 5.44 -51.93 -0.28 0.42 16 4 O -0.28 -3.29 9.39 -38.88 -0.37 -3.66 16 5 C 0.08 0.85 6.62 -39.08 -0.26 0.59 16 6 C -0.17 -1.29 8.43 -39.14 -0.33 -1.62 16 7 C -0.13 -0.83 10.11 -39.46 -0.40 -1.23 16 8 C 0.05 0.41 11.18 -17.54 -0.20 0.21 16 9 N -0.45 -4.53 10.35 -13.13 -0.14 -4.67 16 10 C 0.08 0.78 11.14 -17.37 -0.19 0.59 16 11 C 0.52 7.04 7.01 -10.99 -0.08 6.96 16 12 O -0.52 -9.26 15.99 -13.87 -0.22 -9.48 16 13 N -0.60 -7.44 2.97 -172.76 -0.51 -7.95 16 14 C 0.10 0.91 5.59 -3.71 -0.02 0.89 16 15 C -0.14 -1.50 6.08 -26.62 -0.16 -1.67 16 16 C -0.11 -1.68 4.42 -26.69 -0.12 -1.80 16 17 C -0.12 -1.91 2.54 -90.49 -0.23 -2.14 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.07 5.19 -4.04 -0.02 3.05 16 20 N -0.60 -14.39 2.79 -181.12 -0.51 -14.89 16 21 C 0.16 4.00 8.98 59.85 0.54 4.53 16 22 C -0.25 -6.54 8.24 -15.06 -0.12 -6.67 16 23 H 0.07 1.71 6.53 -52.49 -0.34 1.37 16 24 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 25 N -0.91 -26.06 10.76 55.49 0.60 -25.46 16 26 Si 0.90 21.14 29.57 -169.99 -5.03 16.12 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.12 1.66 5.73 -3.70 -0.02 1.64 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.46 7.03 -51.93 -0.37 0.09 16 33 H 0.09 0.63 6.07 -51.93 -0.31 0.31 16 34 H 0.14 0.76 5.59 -52.48 -0.29 0.46 16 35 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.51 4.41 -51.93 -0.23 0.28 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.74 5.89 -51.93 -0.31 1.44 16 44 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 45 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 46 H 0.02 0.51 7.73 -51.93 -0.40 0.10 16 47 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 48 H 0.05 1.38 6.92 -51.93 -0.36 1.02 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -32.82 396.38 -9.50 -42.32 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.88 Total: -1.09 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.43 Total: 2.79 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.56 Total: -52.97 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.59 Total: -13.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.82 -9.50 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.969 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds