Wall clock time and date at job start Wed Apr 1 2020 04:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47295 * 2 1 4 4 O 1.42899 * 109.47026 * 119.99753 * 2 1 3 5 5 C 1.35912 * 117.00223 * 274.77710 * 4 2 1 6 6 C 1.39135 * 120.47115 * 3.72113 * 5 4 2 7 7 C 1.38536 * 118.37343 * 179.71400 * 6 5 4 8 8 C 1.38256 * 119.22227 * 0.58227 * 7 6 5 9 9 N 1.31847 * 120.88216 * 359.67907 * 8 7 6 10 10 C 1.31843 * 121.78433 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47222 * 239.99587 * 2 1 3 12 12 O 1.21285 * 120.00382 * 255.44067 * 11 2 1 13 13 N 1.34775 * 120.00176 * 75.43900 * 11 2 1 14 14 C 1.46927 * 120.62848 * 354.86835 * 13 11 2 15 15 C 1.53187 * 108.77634 * 233.60939 * 14 13 11 16 16 C 1.53034 * 109.31696 * 305.36532 * 15 14 13 17 17 C 1.53049 * 109.53722 * 61.36733 * 16 15 14 18 18 H 1.09000 * 109.49526 * 58.61468 * 17 16 15 19 19 C 1.52996 * 109.49852 * 178.68548 * 17 16 15 20 20 N 1.46499 * 109.46993 * 294.93245 * 19 17 16 21 21 C 1.46503 * 119.99949 * 269.99826 * 20 19 17 22 22 C 1.36937 * 119.99986 * 90.00384 * 20 19 17 23 23 H 1.08001 * 120.00159 * 334.21939 * 22 20 19 24 24 C 1.38805 * 120.00026 * 154.49927 * 22 20 19 25 25 N 1.31619 * 120.00134 * 349.71218 * 24 22 20 26 26 Si 1.86804 * 120.00192 * 169.71436 * 24 22 20 27 27 H 1.48499 * 109.46803 * 59.99867 * 26 24 22 28 28 H 1.48499 * 109.47140 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46916 * 299.99800 * 26 24 22 30 30 C 1.46928 * 120.60450 * 174.89499 * 13 11 2 31 31 H 1.08999 * 109.47249 * 185.96738 * 1 2 3 32 32 H 1.08997 * 109.47536 * 305.96851 * 1 2 3 33 33 H 1.09001 * 109.46915 * 65.96540 * 1 2 3 34 34 H 1.08007 * 120.81419 * 0.02562 * 6 5 4 35 35 H 1.08006 * 120.39003 * 180.30632 * 7 6 5 36 36 H 1.08002 * 119.55471 * 179.70100 * 8 7 6 37 37 H 1.07997 * 119.65472 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.58541 * 113.82623 * 14 13 11 39 39 H 1.08997 * 109.58682 * 353.39995 * 14 13 11 40 40 H 1.09007 * 109.49726 * 185.41057 * 15 14 13 41 41 H 1.09009 * 109.52405 * 65.33959 * 15 14 13 42 42 H 1.08995 * 109.45998 * 301.34576 * 16 15 14 43 43 H 1.08998 * 109.46481 * 181.38348 * 16 15 14 44 44 H 1.08996 * 109.46890 * 174.93193 * 19 17 16 45 45 H 1.09003 * 109.47200 * 54.93360 * 19 17 16 46 46 H 1.09000 * 109.47231 * 272.54557 * 21 20 19 47 47 H 1.09000 * 109.47127 * 32.55002 * 21 20 19 48 48 H 1.09005 * 109.46646 * 152.54866 * 21 20 19 49 49 H 0.97003 * 120.00191 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.62370 * 6.62140 * 30 13 11 51 51 H 1.09007 * 109.56282 * 246.18548 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1169 0.0638 2.3031 6 6 1.7031 1.3921 2.3253 7 6 1.8301 2.1015 3.5085 8 6 2.3708 1.4753 4.6162 9 7 2.7583 0.2163 4.5600 10 6 2.6492 -0.4952 3.4555 11 6 2.0323 -0.7105 -1.2304 12 8 2.4834 -1.8328 -1.1410 13 7 1.9803 -0.0988 -2.4302 14 6 1.3355 1.2135 -2.5741 15 6 0.2855 1.1277 -3.6862 16 6 0.9446 0.6077 -4.9657 17 6 1.5033 -0.7958 -4.7197 18 1 0.6964 -1.4591 -4.4081 19 6 2.1331 -1.3279 -6.0085 20 7 1.0928 -1.4995 -7.0256 21 6 0.3806 -2.7749 -7.1369 22 6 0.7863 -0.4679 -7.8723 23 1 0.9674 0.5524 -7.5681 24 6 0.2374 -0.7332 -9.1193 25 7 0.1979 -1.9687 -9.5716 26 14 -0.4452 0.6630 -10.1557 27 1 0.6346 1.6420 -10.4399 28 1 -0.9694 0.1198 -11.4345 29 1 -1.5428 1.3372 -9.4167 30 6 2.5670 -0.7325 -3.6189 31 1 -0.3634 -1.0221 0.1068 32 1 -0.3634 0.6036 0.8317 33 1 -0.3633 0.4186 -0.9386 34 1 1.2883 1.8572 1.4432 35 1 1.5146 3.1330 3.5636 36 1 2.4767 2.0248 5.5399 37 1 2.9780 -1.5239 3.4479 38 1 2.0839 1.9617 -2.8352 39 1 0.8528 1.4883 -1.6362 40 1 -0.1328 2.1176 -3.8688 41 1 -0.5103 0.4467 -3.3841 42 1 1.7559 1.2762 -5.2537 43 1 0.2050 0.5689 -5.7654 44 1 2.6096 -2.2879 -5.8105 45 1 2.8792 -0.6192 -6.3678 46 1 0.9345 -3.4442 -7.7952 47 1 0.2908 -3.2283 -6.1498 48 1 -0.6136 -2.6010 -7.5487 49 1 -0.1854 -2.1541 -10.4432 50 1 2.8965 -1.7414 -3.3709 51 1 3.4163 -0.1432 -3.9650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266466961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:13 Heat of formation + Delta-G solvation = -25.873803 kcal Electronic energy + Delta-G solvation = -31063.124545 eV Core-core repulsion = 26963.155793 eV Total energy + Delta-G solvation = -4099.968752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07567 -41.14475 -39.48852 -38.62653 -37.21514 -34.73797 -33.32325 -33.12882 -32.98729 -31.81525 -30.95830 -28.03433 -27.42555 -26.92158 -25.43956 -24.60952 -24.01878 -23.46155 -22.67194 -21.11161 -20.11065 -19.61871 -18.63101 -18.21738 -17.82349 -17.44366 -17.08033 -16.86101 -16.60945 -16.02559 -15.79949 -15.52149 -15.32933 -15.17077 -14.96707 -14.91296 -14.75213 -14.49921 -14.40908 -13.94380 -13.80731 -13.75852 -13.32690 -13.25520 -13.14070 -12.90268 -12.70985 -12.63458 -12.58487 -12.33009 -12.30380 -12.16036 -11.97180 -11.88601 -11.65327 -11.42010 -11.15604 -10.89389 -10.70648 -10.57406 -10.55251 -9.71123 -9.47295 -8.68084 -7.79437 -5.28220 0.15167 0.24173 1.33469 1.43155 1.48987 1.50824 1.57074 2.34015 2.54233 2.80383 3.19942 3.36169 3.50742 3.57894 3.66630 3.75140 3.76473 3.84221 3.90328 3.99489 4.09805 4.15194 4.25927 4.31597 4.41130 4.44003 4.52379 4.54510 4.61146 4.72535 4.76753 4.80474 4.84097 4.87759 4.92233 5.00328 5.02139 5.08011 5.11283 5.21409 5.24450 5.36037 5.42666 5.50886 5.60101 5.63433 5.65107 5.74405 6.12139 6.31770 6.38973 6.97342 6.99243 7.18977 7.90269 8.38519 9.26347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.002076 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.462851 B =13487.141123 C =14096.054606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 H 0.130 0.870 4 O -0.307 6.307 5 C 0.067 3.933 6 C -0.166 4.166 7 C -0.118 4.118 8 C 0.047 3.953 9 N -0.474 5.474 10 C 0.051 3.949 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.599 5.599 14 C 0.096 3.904 15 C -0.129 4.129 16 C -0.109 4.109 17 C -0.102 4.102 18 H 0.042 0.958 19 C 0.155 3.845 20 N -0.613 5.613 21 C 0.179 3.821 22 C -0.246 4.246 23 H 0.083 0.917 24 C -0.062 4.062 25 N -0.946 5.946 26 Si 0.967 3.033 27 H -0.273 1.273 28 H -0.302 1.302 29 H -0.275 1.275 30 C 0.125 3.875 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.156 0.844 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.051 0.949 46 H -0.007 1.007 47 H 0.015 0.985 48 H 0.027 0.973 49 H 0.245 0.755 50 H 0.067 0.933 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 15.180 25.743 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.148 0.852 4 O -0.219 6.219 5 C 0.019 3.981 6 C -0.192 4.192 7 C -0.138 4.138 8 C -0.111 4.111 9 N -0.184 5.184 10 C -0.107 4.107 11 C 0.299 3.701 12 O -0.453 6.453 13 N -0.332 5.332 14 C -0.025 4.025 15 C -0.167 4.167 16 C -0.147 4.147 17 C -0.124 4.124 18 H 0.061 0.939 19 C 0.028 3.972 20 N -0.336 5.336 21 C 0.034 3.966 22 C -0.376 4.376 23 H 0.101 0.899 24 C -0.256 4.256 25 N -0.593 5.593 26 Si 0.796 3.204 27 H -0.199 1.199 28 H -0.229 1.229 29 H -0.201 1.201 30 C 0.002 3.998 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.187 0.813 35 H 0.195 0.805 36 H 0.201 0.799 37 H 0.173 0.827 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.011 0.989 47 H 0.033 0.967 48 H 0.046 0.954 49 H 0.054 0.946 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.234 13.924 26.331 29.811 hybrid contribution -0.748 0.076 -2.064 2.196 sum 0.486 14.000 24.267 28.020 Atomic orbital electron populations 1.22461 0.90630 1.04395 1.05909 1.22368 0.97095 0.97378 0.81907 0.85247 1.86226 1.81282 1.37924 1.16467 1.20359 0.97810 0.92351 0.87560 1.22134 1.02822 0.92587 1.01702 1.22434 0.96969 1.02674 0.91690 1.23287 0.96747 0.90465 1.00558 1.67743 1.15582 1.09062 1.25988 1.22254 1.00346 1.01232 0.86864 1.20672 0.78382 0.85964 0.85122 1.90717 1.47702 1.20559 1.86285 1.48120 1.56905 1.21341 1.06808 1.22275 0.96272 0.82832 1.01078 1.21916 0.97621 1.02743 0.94374 1.21518 1.00580 0.94609 0.97968 1.21903 0.97367 0.98114 0.94994 0.93924 1.20829 0.90142 0.98094 0.88150 1.44037 1.40623 1.11993 1.36986 1.20455 0.95463 0.86699 0.93997 1.19554 1.35976 0.88133 0.93914 0.89905 1.25923 1.03211 0.98365 0.98148 1.70232 1.50315 1.19843 1.18930 0.85335 0.78591 0.78926 0.77574 1.19909 1.22900 1.20077 1.21544 0.95722 0.98764 0.83792 0.92369 0.88099 0.88063 0.81313 0.80506 0.79930 0.82705 0.88679 0.86737 0.88226 0.92545 0.91764 0.92400 0.94764 0.93015 0.98869 0.96699 0.95421 0.94580 0.91422 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.80 71.98 0.63 -1.63 16 2 C 0.07 1.24 1.79 29.85 0.05 1.30 16 3 H 0.13 1.27 5.44 -2.39 -0.01 1.26 16 4 O -0.31 -7.08 9.39 -74.00 -0.69 -7.78 16 5 C 0.07 1.24 6.62 22.60 0.15 1.39 16 6 C -0.17 -1.84 8.43 22.56 0.19 -1.65 16 7 C -0.12 -0.99 10.11 22.35 0.23 -0.77 16 8 C 0.05 0.58 11.18 84.69 0.95 1.53 16 9 N -0.47 -9.30 10.35 -195.44 -2.02 -11.32 16 10 C 0.05 1.05 11.14 84.80 0.94 1.99 16 11 C 0.51 13.30 7.01 87.66 0.61 13.91 16 12 O -0.57 -21.12 15.99 15.52 0.25 -20.88 16 13 N -0.60 -13.46 2.97 -818.89 -2.43 -15.89 16 14 C 0.10 1.34 5.59 86.36 0.48 1.82 16 15 C -0.13 -2.39 6.08 30.67 0.19 -2.20 16 16 C -0.11 -3.07 4.42 30.62 0.14 -2.93 16 17 C -0.10 -3.26 2.54 -10.71 -0.03 -3.29 16 18 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 19 C 0.15 6.08 5.19 86.38 0.45 6.53 16 20 N -0.61 -30.05 2.79 -726.94 -2.03 -32.08 16 21 C 0.18 9.11 8.98 127.77 1.15 10.26 16 22 C -0.25 -12.73 8.24 84.03 0.69 -12.04 16 23 H 0.08 4.00 6.53 -2.91 -0.02 3.98 16 24 C -0.06 -3.42 5.10 84.86 0.43 -2.99 16 25 N -0.95 -56.15 10.76 21.65 0.23 -55.92 16 26 Si 0.97 43.74 29.57 68.60 2.03 45.77 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 C 0.12 3.42 5.73 86.37 0.49 3.92 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.77 7.03 -2.39 -0.02 0.76 16 33 H 0.10 1.01 6.07 -2.39 -0.01 0.99 16 34 H 0.17 0.78 5.59 -2.91 -0.02 0.77 16 35 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.80 4.41 -2.39 -0.01 0.79 16 40 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 2.07 5.89 -2.39 -0.01 2.06 16 44 H 0.03 1.34 8.07 -2.39 -0.02 1.32 16 45 H 0.05 1.98 8.04 -2.39 -0.02 1.97 16 46 H -0.01 -0.39 7.73 -2.39 -0.02 -0.41 16 47 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 48 H 0.03 1.50 6.92 -2.38 -0.02 1.49 16 49 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 50 H 0.07 2.18 7.00 -2.39 -0.02 2.16 16 51 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -77.17 396.38 4.01 -73.16 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.93 Total: 9.79 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 7.75 Total: 15.14 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -6.26 Total: -115.22 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.45 Total: -28.65 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -77.17 4.01 -73.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.290 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds