Wall clock time and date at job start Wed Apr 1 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47299 * 2 1 4 4 O 1.42894 * 109.47125 * 239.99808 * 2 1 3 5 5 C 1.35907 * 117.00515 * 85.81043 * 4 2 1 6 6 C 1.39134 * 120.47014 * 355.40164 * 5 4 2 7 7 C 1.38539 * 118.37349 * 179.71198 * 6 5 4 8 8 C 1.38257 * 119.22238 * 0.57685 * 7 6 5 9 9 N 1.31852 * 120.88214 * 359.67878 * 8 7 6 10 10 C 1.31843 * 121.78153 * 0.02754 * 9 8 7 11 11 C 1.50699 * 109.46816 * 119.99476 * 2 1 3 12 12 O 1.21289 * 119.99866 * 111.55760 * 11 2 1 13 13 N 1.34775 * 120.00335 * 291.55503 * 11 2 1 14 14 C 1.46927 * 120.62801 * 355.40093 * 13 11 2 15 15 C 1.53192 * 108.77638 * 233.60917 * 14 13 11 16 16 C 1.53041 * 109.31384 * 305.36911 * 15 14 13 17 17 C 1.53042 * 109.54133 * 61.36014 * 16 15 14 18 18 H 1.08998 * 109.49690 * 58.61964 * 17 16 15 19 19 C 1.52992 * 109.49904 * 178.68746 * 17 16 15 20 20 N 1.46499 * 109.47167 * 294.93462 * 19 17 16 21 21 C 1.46504 * 120.00478 * 269.99971 * 20 19 17 22 22 C 1.36939 * 119.99923 * 90.00357 * 20 19 17 23 23 H 1.08001 * 119.99751 * 339.11241 * 22 20 19 24 24 C 1.38813 * 120.00297 * 159.39510 * 22 20 19 25 25 N 1.31620 * 119.99584 * 345.95189 * 24 22 20 26 26 Si 1.86798 * 120.00093 * 165.95081 * 24 22 20 27 27 H 1.48501 * 109.47044 * 89.99854 * 26 24 22 28 28 H 1.48501 * 109.47124 * 210.00041 * 26 24 22 29 29 H 1.48501 * 109.47007 * 329.99626 * 26 24 22 30 30 C 1.46930 * 120.60552 * 175.42246 * 13 11 2 31 31 H 1.09004 * 109.47530 * 305.63719 * 1 2 3 32 32 H 1.09006 * 109.47212 * 65.62997 * 1 2 3 33 33 H 1.08998 * 109.47744 * 185.62850 * 1 2 3 34 34 H 1.07999 * 120.81742 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.39096 * 180.25337 * 7 6 5 36 36 H 1.07993 * 119.56172 * 179.70516 * 8 7 6 37 37 H 1.07995 * 119.65621 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.58545 * 113.82242 * 14 13 11 39 39 H 1.08998 * 109.58866 * 353.39508 * 14 13 11 40 40 H 1.08995 * 109.49871 * 185.41841 * 15 14 13 41 41 H 1.08999 * 109.52193 * 65.33072 * 15 14 13 42 42 H 1.09004 * 109.45654 * 301.34356 * 16 15 14 43 43 H 1.08998 * 109.46300 * 181.38437 * 16 15 14 44 44 H 1.09004 * 109.47397 * 174.93503 * 19 17 16 45 45 H 1.08998 * 109.47533 * 54.93915 * 19 17 16 46 46 H 1.08992 * 109.47201 * 265.02878 * 21 20 19 47 47 H 1.09005 * 109.46504 * 25.02719 * 21 20 19 48 48 H 1.09001 * 109.47294 * 145.01848 * 21 20 19 49 49 H 0.96997 * 119.99608 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.61784 * 6.61981 * 30 13 11 51 51 H 1.09003 * 109.56304 * 246.18863 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1286 0.0665 -2.3000 6 6 1.7093 1.3929 -2.3250 7 6 1.8599 2.1089 -3.5015 8 6 2.4063 1.4836 -4.6069 9 7 2.7887 0.2230 -4.5513 10 6 2.6680 -0.4913 -3.4497 11 6 2.0322 -0.7103 1.2305 12 8 2.5982 -1.7779 1.1259 13 7 1.8526 -0.1593 2.4473 14 6 1.2596 1.1782 2.5832 15 6 2.1967 2.0497 3.4253 16 6 2.4795 1.3493 4.7563 17 6 3.1719 0.0101 4.4931 18 1 4.0992 0.1813 3.9463 19 6 3.4836 -0.6742 5.8254 20 7 4.4603 0.1257 6.5685 21 6 5.8940 -0.1165 6.3892 22 6 4.0333 1.0999 7.4310 23 1 3.0413 1.5146 7.3287 24 6 4.8774 1.5586 8.4330 25 7 5.9664 0.8844 8.7358 26 14 4.4677 3.1328 9.3515 27 1 3.6383 2.8105 10.5404 28 1 5.7244 3.7923 9.7884 29 1 3.7146 4.0469 8.4556 30 6 2.2465 -0.8849 3.6627 31 1 -0.3634 0.5988 0.8352 32 1 -0.3634 0.4241 -0.9361 33 1 -0.3634 -1.0227 0.1008 34 1 1.2809 1.8544 -1.4476 35 1 1.5492 3.1419 -3.5560 36 1 2.5217 2.0352 -5.5282 37 1 2.9922 -1.5214 -3.4426 38 1 0.2911 1.1000 3.0771 39 1 1.1341 1.6242 1.5966 40 1 1.7247 3.0138 3.6146 41 1 3.1329 2.2021 2.8883 42 1 1.5405 1.1755 5.2818 43 1 3.1264 1.9786 5.3676 44 1 3.8943 -1.6662 5.6371 45 1 2.5682 -0.7651 6.4101 46 1 6.2477 -0.7953 7.1652 47 1 6.0673 -0.5625 5.4097 48 1 6.4337 0.8280 6.4589 49 1 6.5561 1.2047 9.4362 50 1 2.7722 -1.7996 3.3886 51 1 1.3584 -1.1317 4.2445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266466962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:20 Heat of formation + Delta-G solvation = -6.320964 kcal Electronic energy + Delta-G solvation = -31112.679072 eV Core-core repulsion = 27013.558194 eV Total energy + Delta-G solvation = -4099.120878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29304 -40.25696 -38.61250 -37.44819 -35.62907 -33.49394 -32.60328 -32.10594 -31.75555 -30.50982 -30.08124 -26.30893 -25.86954 -25.75042 -24.69434 -23.91076 -22.97452 -22.45273 -21.18840 -19.70115 -19.20278 -18.91766 -17.39259 -17.15386 -16.72861 -16.53528 -16.13164 -15.82321 -15.28480 -14.96116 -14.73927 -14.30358 -14.26213 -14.13450 -13.97015 -13.83608 -13.44731 -13.38250 -13.20174 -12.98493 -12.73042 -12.67108 -12.55599 -12.35445 -11.95887 -11.68893 -11.65159 -11.31214 -11.01713 -10.83264 -10.77747 -10.62962 -10.36426 -10.34126 -10.21239 -10.07574 -9.96125 -9.84008 -9.77585 -9.66713 -8.79943 -8.65675 -8.52410 -6.75175 -5.72595 -3.16583 0.75064 0.84752 2.21126 2.40090 3.15702 3.35111 3.41469 3.42347 3.42925 4.00937 4.13933 4.17831 4.33881 4.39566 4.44139 4.47929 4.68444 4.70454 4.81816 4.95782 5.01708 5.07388 5.14434 5.23597 5.29860 5.35411 5.42363 5.54255 5.58711 5.63093 5.64693 5.65704 5.82512 5.86567 5.94204 6.00395 6.06751 6.13337 6.30261 6.51124 6.55928 6.64268 6.79261 6.80899 6.96461 6.97520 7.26122 7.40836 7.59513 7.72851 7.80693 7.99699 8.38552 9.23296 9.88192 10.37127 11.32532 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002187 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.838754 B =12801.508485 C =13043.397029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.065 3.935 3 H 0.097 0.903 4 O -0.277 6.277 5 C 0.084 3.916 6 C -0.171 4.171 7 C -0.129 4.129 8 C 0.054 3.946 9 N -0.446 5.446 10 C 0.077 3.923 11 C 0.518 3.482 12 O -0.518 6.518 13 N -0.601 5.601 14 C 0.103 3.897 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.119 4.119 18 H 0.066 0.934 19 C 0.158 3.842 20 N -0.600 5.600 21 C 0.163 3.837 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.002 4.002 25 N -0.907 5.907 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.118 3.882 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.029 0.971 47 H -0.004 1.004 48 H 0.042 0.958 49 H 0.251 0.749 50 H 0.089 0.911 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 3.404 -21.761 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.005 3.995 3 H 0.114 0.886 4 O -0.188 6.188 5 C 0.036 3.964 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.304 3.696 12 O -0.393 6.393 13 N -0.335 5.335 14 C -0.020 4.020 15 C -0.175 4.175 16 C -0.149 4.149 17 C -0.141 4.141 18 H 0.084 0.916 19 C 0.030 3.970 20 N -0.323 5.323 21 C 0.019 3.981 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.200 4.200 25 N -0.552 5.552 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 C -0.004 4.004 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.015 0.985 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.237 2.253 -22.368 25.596 hybrid contribution -0.600 1.725 1.443 2.328 sum -12.837 3.979 -20.925 24.869 Atomic orbital electron populations 1.22381 0.92295 1.04823 1.03950 1.22286 0.95971 0.97008 0.84210 0.88583 1.86249 1.80623 1.36183 1.15694 1.20279 0.96565 0.91155 0.88390 1.21779 1.03803 0.93884 1.00251 1.22014 0.98765 1.01151 0.92978 1.22699 0.97597 0.91156 0.98803 1.67762 1.14426 1.07535 1.25812 1.22282 0.98779 1.01045 0.86076 1.19895 0.79888 0.86040 0.83817 1.90745 1.40968 1.21950 1.85660 1.48048 1.61805 1.18053 1.05631 1.21938 0.97173 0.82350 1.00527 1.21983 0.99346 0.98300 0.97833 1.21612 1.00866 0.97044 0.95358 1.22242 0.97493 0.95723 0.98627 0.91576 1.20659 0.93665 0.92567 0.90125 1.43871 1.00907 1.39832 1.47655 1.20780 0.83843 0.99567 0.93936 1.19186 1.00176 1.11847 1.06787 0.91065 1.24996 0.98210 0.99357 0.97423 1.70089 1.14932 1.38022 1.32199 0.86325 0.77163 0.83577 0.79858 1.21530 1.21696 1.20638 1.21811 0.98984 0.96041 0.83590 0.89698 0.90733 0.90414 0.84192 0.84363 0.82451 0.81716 0.90837 0.90746 0.90965 0.91819 0.92648 0.88726 0.94455 0.93393 0.95302 0.98524 0.93950 0.93821 0.89218 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 8.86 37.16 0.33 -0.94 16 2 C 0.07 0.65 1.79 -27.88 -0.05 0.60 16 3 H 0.10 0.77 5.13 -51.93 -0.27 0.50 16 4 O -0.28 -3.33 9.35 -39.21 -0.37 -3.70 16 5 C 0.08 0.87 6.60 -39.08 -0.26 0.61 16 6 C -0.17 -1.35 8.37 -39.14 -0.33 -1.68 16 7 C -0.13 -0.88 10.11 -39.46 -0.40 -1.28 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.24 16 9 N -0.45 -4.68 10.36 -13.13 -0.14 -4.82 16 10 C 0.08 0.81 11.14 -17.37 -0.19 0.62 16 11 C 0.52 7.03 7.05 -10.99 -0.08 6.95 16 12 O -0.52 -9.27 15.94 -14.22 -0.23 -9.50 16 13 N -0.60 -7.39 2.97 -172.76 -0.51 -7.90 16 14 C 0.10 0.95 5.13 -3.71 -0.02 0.93 16 15 C -0.14 -1.56 6.08 -26.61 -0.16 -1.72 16 16 C -0.11 -1.69 4.44 -26.69 -0.12 -1.81 16 17 C -0.12 -1.93 2.54 -90.50 -0.23 -2.16 16 18 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 19 C 0.16 3.08 5.15 -4.05 -0.02 3.06 16 20 N -0.60 -14.47 2.80 -181.12 -0.51 -14.98 16 21 C 0.16 4.02 8.97 59.85 0.54 4.56 16 22 C -0.25 -6.49 8.15 -15.06 -0.12 -6.61 16 23 H 0.07 1.76 6.77 -52.49 -0.36 1.41 16 24 C 0.00 -0.05 5.08 -17.43 -0.09 -0.14 16 25 N -0.91 -26.16 10.63 55.49 0.59 -25.57 16 26 Si 0.90 21.22 29.58 -169.99 -5.03 16.20 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 C 0.12 1.65 5.73 -3.71 -0.02 1.63 16 31 H 0.08 0.46 6.17 -51.93 -0.32 0.14 16 32 H 0.07 0.44 7.17 -51.93 -0.37 0.07 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.14 0.80 5.73 -52.49 -0.30 0.50 16 35 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.49 4.97 -51.93 -0.26 0.23 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.78 5.97 -51.93 -0.31 1.47 16 44 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 45 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 46 H 0.03 0.77 7.40 -51.93 -0.38 0.38 16 47 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 48 H 0.04 1.11 7.19 -51.93 -0.37 0.74 16 49 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 50 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -33.06 396.46 -9.55 -42.62 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.92 Total: -1.19 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.42 Total: 2.86 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.57 Total: -53.27 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.59 Total: -13.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.06 -9.55 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.296 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds