Wall clock time and date at job start Wed Apr 1 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47299 * 2 1 4 4 O 1.42894 * 109.47125 * 239.99808 * 2 1 3 5 5 C 1.35907 * 117.00515 * 85.81043 * 4 2 1 6 6 C 1.39134 * 120.47014 * 355.40164 * 5 4 2 7 7 C 1.38539 * 118.37349 * 179.71198 * 6 5 4 8 8 C 1.38257 * 119.22238 * 0.57685 * 7 6 5 9 9 N 1.31852 * 120.88214 * 359.67878 * 8 7 6 10 10 C 1.31843 * 121.78153 * 0.02754 * 9 8 7 11 11 C 1.50699 * 109.46816 * 119.99476 * 2 1 3 12 12 O 1.21289 * 119.99866 * 111.55760 * 11 2 1 13 13 N 1.34775 * 120.00335 * 291.55503 * 11 2 1 14 14 C 1.46927 * 120.62801 * 355.40093 * 13 11 2 15 15 C 1.53192 * 108.77638 * 233.60917 * 14 13 11 16 16 C 1.53041 * 109.31384 * 305.36911 * 15 14 13 17 17 C 1.53042 * 109.54133 * 61.36014 * 16 15 14 18 18 H 1.08998 * 109.49690 * 58.61964 * 17 16 15 19 19 C 1.52992 * 109.49904 * 178.68746 * 17 16 15 20 20 N 1.46499 * 109.47167 * 294.93462 * 19 17 16 21 21 C 1.46504 * 120.00478 * 269.99971 * 20 19 17 22 22 C 1.36939 * 119.99923 * 90.00357 * 20 19 17 23 23 H 1.08001 * 119.99751 * 339.11241 * 22 20 19 24 24 C 1.38813 * 120.00297 * 159.39510 * 22 20 19 25 25 N 1.31620 * 119.99584 * 345.95189 * 24 22 20 26 26 Si 1.86798 * 120.00093 * 165.95081 * 24 22 20 27 27 H 1.48501 * 109.47044 * 89.99854 * 26 24 22 28 28 H 1.48501 * 109.47124 * 210.00041 * 26 24 22 29 29 H 1.48501 * 109.47007 * 329.99626 * 26 24 22 30 30 C 1.46930 * 120.60552 * 175.42246 * 13 11 2 31 31 H 1.09004 * 109.47530 * 305.63719 * 1 2 3 32 32 H 1.09006 * 109.47212 * 65.62997 * 1 2 3 33 33 H 1.08998 * 109.47744 * 185.62850 * 1 2 3 34 34 H 1.07999 * 120.81742 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.39096 * 180.25337 * 7 6 5 36 36 H 1.07993 * 119.56172 * 179.70516 * 8 7 6 37 37 H 1.07995 * 119.65621 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.58545 * 113.82242 * 14 13 11 39 39 H 1.08998 * 109.58866 * 353.39508 * 14 13 11 40 40 H 1.08995 * 109.49871 * 185.41841 * 15 14 13 41 41 H 1.08999 * 109.52193 * 65.33072 * 15 14 13 42 42 H 1.09004 * 109.45654 * 301.34356 * 16 15 14 43 43 H 1.08998 * 109.46300 * 181.38437 * 16 15 14 44 44 H 1.09004 * 109.47397 * 174.93503 * 19 17 16 45 45 H 1.08998 * 109.47533 * 54.93915 * 19 17 16 46 46 H 1.08992 * 109.47201 * 265.02878 * 21 20 19 47 47 H 1.09005 * 109.46504 * 25.02719 * 21 20 19 48 48 H 1.09001 * 109.47294 * 145.01848 * 21 20 19 49 49 H 0.96997 * 119.99608 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.61784 * 6.61981 * 30 13 11 51 51 H 1.09003 * 109.56304 * 246.18863 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1286 0.0665 -2.3000 6 6 1.7093 1.3929 -2.3250 7 6 1.8599 2.1089 -3.5015 8 6 2.4063 1.4836 -4.6069 9 7 2.7887 0.2230 -4.5513 10 6 2.6680 -0.4913 -3.4497 11 6 2.0322 -0.7103 1.2305 12 8 2.5982 -1.7779 1.1259 13 7 1.8526 -0.1593 2.4473 14 6 1.2596 1.1782 2.5832 15 6 2.1967 2.0497 3.4253 16 6 2.4795 1.3493 4.7563 17 6 3.1719 0.0101 4.4931 18 1 4.0992 0.1813 3.9463 19 6 3.4836 -0.6742 5.8254 20 7 4.4603 0.1257 6.5685 21 6 5.8940 -0.1165 6.3892 22 6 4.0333 1.0999 7.4310 23 1 3.0413 1.5146 7.3287 24 6 4.8774 1.5586 8.4330 25 7 5.9664 0.8844 8.7358 26 14 4.4677 3.1328 9.3515 27 1 3.6383 2.8105 10.5404 28 1 5.7244 3.7923 9.7884 29 1 3.7146 4.0469 8.4556 30 6 2.2465 -0.8849 3.6627 31 1 -0.3634 0.5988 0.8352 32 1 -0.3634 0.4241 -0.9361 33 1 -0.3634 -1.0227 0.1008 34 1 1.2809 1.8544 -1.4476 35 1 1.5492 3.1419 -3.5560 36 1 2.5217 2.0352 -5.5282 37 1 2.9922 -1.5214 -3.4426 38 1 0.2911 1.1000 3.0771 39 1 1.1341 1.6242 1.5966 40 1 1.7247 3.0138 3.6146 41 1 3.1329 2.2021 2.8883 42 1 1.5405 1.1755 5.2818 43 1 3.1264 1.9786 5.3676 44 1 3.8943 -1.6662 5.6371 45 1 2.5682 -0.7651 6.4101 46 1 6.2477 -0.7953 7.1652 47 1 6.0673 -0.5625 5.4097 48 1 6.4337 0.8280 6.4589 49 1 6.5561 1.2047 9.4362 50 1 2.7722 -1.7996 3.3886 51 1 1.3584 -1.1317 4.2445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266466962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:19 Heat of formation + Delta-G solvation = -26.137640 kcal Electronic energy + Delta-G solvation = -31113.538387 eV Core-core repulsion = 27013.558194 eV Total energy + Delta-G solvation = -4099.980193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.06889 -41.14066 -39.49453 -38.62528 -37.22375 -34.75778 -33.32239 -33.14819 -32.91033 -31.82646 -30.95789 -28.04341 -27.42587 -26.89598 -25.46138 -24.61758 -24.02323 -23.51681 -22.61610 -21.03191 -20.21534 -19.62906 -18.65164 -18.19183 -17.82499 -17.44217 -17.06638 -16.91418 -16.58676 -16.08377 -15.72936 -15.48074 -15.32642 -15.10486 -14.97879 -14.91536 -14.77573 -14.48562 -14.33246 -13.96648 -13.88281 -13.74274 -13.37010 -13.30320 -13.09387 -12.90698 -12.72057 -12.64635 -12.53902 -12.39488 -12.26529 -12.12961 -11.95480 -11.88595 -11.66885 -11.42588 -11.16559 -10.89555 -10.71008 -10.58428 -10.57225 -9.70583 -9.48015 -8.74989 -7.77864 -5.23711 0.14156 0.23139 1.34972 1.44464 1.48378 1.49507 1.58223 2.32984 2.54514 2.79491 3.20881 3.35709 3.48880 3.57057 3.66174 3.74128 3.77340 3.85635 3.90035 3.99605 4.09405 4.14281 4.25356 4.31798 4.40905 4.46849 4.53651 4.57977 4.64175 4.71961 4.76780 4.79210 4.82121 4.88321 4.91105 4.99729 5.01640 5.07657 5.11593 5.20709 5.23880 5.35024 5.42352 5.50750 5.59663 5.63966 5.66573 5.73842 6.11717 6.31995 6.35749 6.96395 6.99929 7.18017 7.90805 8.36724 9.26848 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002187 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.838754 B =12801.508485 C =13043.397029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 H 0.123 0.877 4 O -0.307 6.307 5 C 0.067 3.933 6 C -0.167 4.167 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.474 5.474 10 C 0.050 3.950 11 C 0.511 3.489 12 O -0.575 6.575 13 N -0.598 5.598 14 C 0.100 3.900 15 C -0.130 4.130 16 C -0.109 4.109 17 C -0.103 4.103 18 H 0.039 0.961 19 C 0.155 3.845 20 N -0.615 5.615 21 C 0.180 3.820 22 C -0.241 4.241 23 H 0.085 0.915 24 C -0.066 4.066 25 N -0.946 5.946 26 Si 0.965 3.035 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.264 1.264 30 C 0.125 3.875 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.156 0.844 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.001 0.999 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.244 0.756 50 H 0.067 0.933 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.558 6.587 -23.345 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.140 0.860 4 O -0.219 6.219 5 C 0.019 3.981 6 C -0.193 4.193 7 C -0.138 4.138 8 C -0.111 4.111 9 N -0.184 5.184 10 C -0.107 4.107 11 C 0.298 3.702 12 O -0.454 6.454 13 N -0.331 5.331 14 C -0.021 4.021 15 C -0.168 4.168 16 C -0.146 4.146 17 C -0.125 4.125 18 H 0.058 0.942 19 C 0.028 3.972 20 N -0.338 5.338 21 C 0.034 3.966 22 C -0.371 4.371 23 H 0.103 0.897 24 C -0.260 4.260 25 N -0.595 5.595 26 Si 0.794 3.206 27 H -0.214 1.214 28 H -0.228 1.228 29 H -0.188 1.188 30 C 0.002 3.998 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.186 0.814 35 H 0.195 0.805 36 H 0.201 0.799 37 H 0.173 0.827 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.020 0.980 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.053 0.947 50 H 0.086 0.914 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.756 5.453 -23.981 29.207 hybrid contribution 0.469 0.718 1.852 2.041 sum -15.287 6.171 -22.129 27.594 Atomic orbital electron populations 1.22406 0.89739 1.04618 1.06025 1.22406 0.97653 0.97089 0.81919 0.85971 1.86208 1.81406 1.37655 1.16635 1.20354 0.97727 0.92351 0.87656 1.22131 1.02818 0.92632 1.01702 1.22435 0.97005 1.02614 0.91787 1.23284 0.96800 0.90477 1.00516 1.67744 1.15584 1.09021 1.26005 1.22262 1.00237 1.01243 0.86963 1.20665 0.78842 0.85569 0.85084 1.90720 1.43530 1.24606 1.86530 1.48104 1.61216 1.19102 1.04643 1.22260 0.97215 0.80036 1.02579 1.21928 0.99745 0.99547 0.95596 1.21511 1.00160 0.95576 0.97391 1.21918 0.97208 0.96850 0.96507 0.94245 1.20839 0.92728 0.92351 0.91263 1.44108 1.01293 1.40375 1.48048 1.20472 0.84394 0.97649 0.94062 1.19582 1.00310 1.11404 1.05850 0.89748 1.25809 0.98595 1.02533 0.99037 1.70273 1.16282 1.39709 1.33189 0.85291 0.76431 0.80181 0.78701 1.21397 1.22833 1.18804 1.21546 0.98993 0.94805 0.84424 0.87049 0.88922 0.92021 0.81375 0.80548 0.79929 0.82658 0.88131 0.86995 0.88262 0.93094 0.91518 0.92562 0.94576 0.92772 0.98040 0.96347 0.96438 0.94676 0.91438 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.86 71.98 0.64 -1.13 16 2 C 0.07 1.19 1.79 29.85 0.05 1.24 16 3 H 0.12 1.40 5.13 -2.39 -0.01 1.39 16 4 O -0.31 -7.22 9.35 -73.60 -0.69 -7.91 16 5 C 0.07 1.30 6.60 22.60 0.15 1.45 16 6 C -0.17 -2.03 8.37 22.56 0.19 -1.84 16 7 C -0.12 -1.14 10.11 22.35 0.23 -0.91 16 8 C 0.05 0.63 11.18 84.69 0.95 1.57 16 9 N -0.47 -9.75 10.36 -195.44 -2.02 -11.77 16 10 C 0.05 1.09 11.14 84.80 0.94 2.04 16 11 C 0.51 13.23 7.05 87.66 0.62 13.85 16 12 O -0.57 -21.14 15.94 15.84 0.25 -20.88 16 13 N -0.60 -13.26 2.97 -818.87 -2.43 -15.70 16 14 C 0.10 1.36 5.13 86.36 0.44 1.80 16 15 C -0.13 -2.48 6.08 30.67 0.19 -2.30 16 16 C -0.11 -3.08 4.44 30.62 0.14 -2.94 16 17 C -0.10 -3.30 2.54 -10.72 -0.03 -3.33 16 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 19 C 0.15 6.04 5.15 86.38 0.44 6.48 16 20 N -0.62 -30.18 2.80 -726.94 -2.04 -32.22 16 21 C 0.18 9.18 8.97 127.77 1.15 10.33 16 22 C -0.24 -12.54 8.15 84.03 0.68 -11.86 16 23 H 0.08 4.09 6.77 -2.91 -0.02 4.07 16 24 C -0.07 -3.63 5.08 84.86 0.43 -3.20 16 25 N -0.95 -56.43 10.63 21.65 0.23 -56.20 16 26 Si 0.97 43.95 29.58 68.60 2.03 45.97 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 30 C 0.13 3.38 5.73 86.36 0.49 3.88 16 31 H 0.11 0.55 6.17 -2.39 -0.01 0.53 16 32 H 0.09 0.67 7.17 -2.38 -0.02 0.65 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.17 0.97 5.73 -2.91 -0.02 0.95 16 35 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 36 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.74 4.97 -2.39 -0.01 0.73 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.06 2.05 5.97 -2.39 -0.01 2.03 16 44 H 0.04 1.40 8.07 -2.38 -0.02 1.38 16 45 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 46 H 0.00 0.07 7.40 -2.39 -0.02 0.06 16 47 H 0.02 0.82 8.03 -2.38 -0.02 0.81 16 48 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 49 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.07 2.15 7.00 -2.39 -0.02 2.13 16 51 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.97 396.46 3.96 -74.01 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.93 Total: 9.56 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.70 Total: 15.13 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.27 Total: -115.89 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.44 Total: -28.79 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.97 3.96 -74.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.874 kcal (2) G-P(sol) polarization free energy of solvation -77.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds