Wall clock time and date at job start Wed Apr 1 2020 04:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47106 * 2 1 4 4 O 1.42902 * 109.47113 * 120.00016 * 2 1 3 5 5 C 1.35911 * 116.99903 * 274.67608 * 4 2 1 6 6 C 1.39132 * 120.47419 * 5.36943 * 5 4 2 7 7 C 1.38548 * 118.37241 * 180.29569 * 6 5 4 8 8 C 1.38247 * 119.21729 * 359.43503 * 7 6 5 9 9 N 1.31849 * 120.88947 * 0.58023 * 8 7 6 10 10 C 1.31837 * 121.78054 * 359.72071 * 9 8 7 11 11 C 1.50698 * 109.47433 * 240.00463 * 2 1 3 12 12 O 1.21277 * 119.99970 * 245.00165 * 11 2 1 13 13 N 1.34776 * 119.99987 * 64.99573 * 11 2 1 14 14 C 1.46922 * 120.63222 * 359.72252 * 13 11 2 15 15 C 1.53625 * 108.54362 * 126.37051 * 14 13 11 16 16 C 1.53035 * 109.24212 * 54.85583 * 15 14 13 17 17 C 1.53039 * 109.54015 * 298.51258 * 16 15 14 18 18 H 1.09004 * 109.52737 * 301.39980 * 17 16 15 19 19 C 1.53000 * 109.49852 * 181.31693 * 17 16 15 20 20 N 1.46495 * 109.47109 * 65.16034 * 19 17 16 21 21 C 1.46504 * 119.99755 * 90.00034 * 20 19 17 22 22 C 1.36934 * 120.00289 * 269.99869 * 20 19 17 23 23 H 1.08000 * 119.99591 * 18.19065 * 22 20 19 24 24 C 1.38813 * 119.99941 * 198.18735 * 22 20 19 25 25 N 1.31616 * 120.00180 * 19.02354 * 24 22 20 26 26 Si 1.86795 * 119.99901 * 199.01449 * 24 22 20 27 27 H 1.48501 * 109.47158 * 90.00383 * 26 24 22 28 28 H 1.48503 * 109.47332 * 210.00439 * 26 24 22 29 29 H 1.48498 * 109.47454 * 330.00835 * 26 24 22 30 30 C 1.46929 * 120.63043 * 180.02562 * 13 11 2 31 31 H 1.09001 * 109.47263 * 59.99685 * 1 2 3 32 32 H 1.09005 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47102 * 299.99574 * 1 2 3 34 34 H 1.07995 * 120.81749 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.38649 * 179.72542 * 7 6 5 36 36 H 1.08008 * 119.55447 * 180.27718 * 8 7 6 37 37 H 1.08003 * 119.66117 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.59094 * 246.20493 * 14 13 11 39 39 H 1.09005 * 109.58526 * 6.62897 * 14 13 11 40 40 H 1.08998 * 109.63231 * 294.86417 * 15 14 13 41 41 H 1.08998 * 109.45601 * 174.74329 * 15 14 13 42 42 H 1.09005 * 109.46089 * 178.49139 * 16 15 14 43 43 H 1.08998 * 109.44893 * 58.52842 * 16 15 14 44 44 H 1.09004 * 109.47192 * 185.16659 * 19 17 16 45 45 H 1.08999 * 109.47230 * 305.15873 * 19 17 16 46 46 H 1.09003 * 109.47228 * 94.55902 * 21 20 19 47 47 H 1.08997 * 109.46923 * 214.55866 * 21 20 19 48 48 H 1.09000 * 109.47346 * 334.56018 * 21 20 19 49 49 H 0.97004 * 120.00385 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.58330 * 353.37453 * 30 13 11 51 51 H 1.09003 * 109.58728 * 113.79605 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1189 0.0643 2.3025 6 6 1.6757 1.3827 2.3342 7 6 1.8173 2.0968 3.5130 8 6 2.3790 1.4773 4.6139 9 7 2.7890 0.2258 4.5505 10 6 2.6778 -0.4862 3.4465 11 6 2.0324 -0.7103 -1.2305 12 8 2.6530 -1.7465 -1.1216 13 7 1.7919 -0.1940 -2.4520 14 6 1.0362 1.0572 -2.6004 15 6 1.8682 2.0330 -3.4464 16 6 2.2391 1.3624 -4.7710 17 6 3.0885 0.1196 -4.4953 18 1 3.9860 0.4059 -3.9470 19 6 3.4862 -0.5316 -5.8214 20 7 4.3629 0.3749 -6.5670 21 6 5.8145 0.3082 -6.3805 22 6 3.8256 1.2845 -7.4382 23 1 2.7796 1.5448 -7.3700 24 6 4.6253 1.8721 -8.4088 25 7 5.7673 1.3125 -8.7478 26 14 4.0805 3.4568 -9.2340 27 1 4.5929 4.6179 -8.4630 28 1 4.6184 3.5049 -10.6174 29 1 2.5970 3.5077 -9.2777 30 6 2.2748 -0.8752 -3.6609 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.2360 1.8398 1.4601 35 1 1.4885 3.1238 3.5725 36 1 2.4879 2.0275 5.5370 37 1 3.0254 -1.5086 3.4326 38 1 0.0879 0.8546 -3.0981 39 1 0.8501 1.4904 -1.6176 40 1 2.7768 2.3019 -2.9077 41 1 1.2834 2.9313 -3.6445 42 1 2.8068 2.0613 -5.3854 43 1 1.3301 1.0716 -5.2976 44 1 4.0125 -1.4656 -5.6242 45 1 2.5910 -0.7361 -6.4087 46 1 6.2500 -0.3345 -7.1457 47 1 6.2377 1.3092 -6.4628 48 1 6.0358 -0.1000 -5.3943 49 1 6.3260 1.7228 -9.4264 50 1 2.9062 -1.7175 -3.3782 51 1 1.4253 -1.2320 -4.2433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266466963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:29 Heat of formation + Delta-G solvation = -3.994233 kcal Electronic energy + Delta-G solvation = -31132.120246 eV Core-core repulsion = 27033.100264 eV Total energy + Delta-G solvation = -4099.019983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.29921 -40.26814 -38.60473 -37.45078 -35.65520 -33.55092 -32.60275 -32.10401 -31.73119 -30.52956 -30.05283 -26.32162 -25.91388 -25.75157 -24.66034 -23.91103 -22.96240 -22.47667 -21.19433 -19.72643 -19.23366 -18.89651 -17.38662 -17.15975 -16.72573 -16.53408 -16.15225 -15.82144 -15.26040 -14.98261 -14.71626 -14.32458 -14.29463 -14.12692 -13.99164 -13.85844 -13.45874 -13.39629 -13.18157 -12.98755 -12.76661 -12.68545 -12.51125 -12.33495 -11.94352 -11.69098 -11.63024 -11.31998 -11.04958 -10.84820 -10.76254 -10.62019 -10.38868 -10.34534 -10.21164 -10.07544 -9.96064 -9.84815 -9.78517 -9.66825 -8.80002 -8.65410 -8.51381 -6.79503 -5.74780 -3.14549 0.75273 0.84894 2.21862 2.39914 3.15853 3.35332 3.41576 3.42615 3.43804 4.00224 4.14631 4.19406 4.34615 4.38899 4.45047 4.48145 4.67401 4.70149 4.80986 4.92953 5.01051 5.07363 5.14430 5.21839 5.28813 5.35592 5.40879 5.53356 5.58710 5.62802 5.65115 5.66035 5.81411 5.86162 5.93564 6.00209 6.05974 6.12495 6.29626 6.50379 6.54960 6.63174 6.76509 6.81034 6.95570 6.96667 7.25845 7.37729 7.59702 7.69208 7.79695 7.99649 8.35970 9.21376 9.87492 10.35724 11.31056 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.002204 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.667601 B =12702.336930 C =12939.485469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.097 0.903 4 O -0.276 6.276 5 C 0.084 3.916 6 C -0.170 4.170 7 C -0.129 4.129 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.518 3.482 12 O -0.519 6.519 13 N -0.601 5.601 14 C 0.099 3.901 15 C -0.136 4.136 16 C -0.112 4.112 17 C -0.118 4.118 18 H 0.066 0.934 19 C 0.158 3.842 20 N -0.600 5.600 21 C 0.162 3.838 22 C -0.251 4.251 23 H 0.073 0.927 24 C -0.002 4.002 25 N -0.904 5.904 26 Si 0.898 3.102 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.118 3.882 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.027 0.973 47 H 0.042 0.958 48 H -0.002 1.002 49 H 0.252 0.748 50 H 0.089 0.911 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.865 2.187 21.799 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.006 3.994 3 H 0.115 0.885 4 O -0.187 6.187 5 C 0.036 3.964 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.304 3.696 12 O -0.394 6.394 13 N -0.335 5.335 14 C -0.024 4.024 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.141 4.141 18 H 0.084 0.916 19 C 0.030 3.970 20 N -0.322 5.322 21 C 0.017 3.983 22 C -0.381 4.381 23 H 0.091 0.909 24 C -0.200 4.200 25 N -0.549 5.549 26 Si 0.728 3.272 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.205 1.205 30 C -0.004 4.004 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.972 1.068 22.398 25.419 hybrid contribution -0.698 1.740 -1.374 2.324 sum -12.671 2.807 21.024 24.707 Atomic orbital electron populations 1.22526 0.92450 1.04927 1.04202 1.22253 0.95898 0.97030 0.84224 0.88519 1.86250 1.80662 1.36314 1.15505 1.20276 0.96529 0.91225 0.88357 1.21790 1.03665 0.94004 1.00234 1.22015 0.98816 1.01113 0.92983 1.22697 0.97411 0.91282 0.98852 1.67758 1.14728 1.07498 1.25565 1.22284 0.98664 1.01051 0.86172 1.19890 0.80367 0.85549 0.83820 1.90741 1.39672 1.23164 1.85816 1.48043 1.55054 1.24830 1.05577 1.22125 0.95160 0.84430 1.00640 1.22063 0.99872 0.97694 0.97814 1.21610 0.99721 0.98132 0.95443 1.22248 0.97653 0.95606 0.98553 0.91578 1.20655 0.94525 0.91652 0.90184 1.43897 1.01738 1.39721 1.46854 1.20772 0.83383 1.00147 0.93974 1.19199 0.95305 1.15421 1.08152 0.90917 1.24909 0.97775 0.99910 0.97403 1.70125 1.13986 1.38150 1.32625 0.86351 0.77955 0.84314 0.78553 1.21644 1.21904 1.20543 1.21816 0.98680 0.96145 0.83774 0.89304 0.90348 0.90758 0.84173 0.84362 0.82453 0.81719 0.90761 0.90373 0.91800 0.90996 0.88712 0.92644 0.94438 0.93374 0.95429 0.93924 0.98351 0.93808 0.89234 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.77 37.16 0.33 -0.98 16 2 C 0.07 0.66 1.81 -27.89 -0.05 0.61 16 3 H 0.10 0.79 5.63 -51.93 -0.29 0.49 16 4 O -0.28 -3.33 9.35 -39.32 -0.37 -3.70 16 5 C 0.08 0.87 6.62 -39.08 -0.26 0.61 16 6 C -0.17 -1.35 8.36 -39.14 -0.33 -1.68 16 7 C -0.13 -0.89 10.11 -39.46 -0.40 -1.28 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.24 16 9 N -0.45 -4.70 10.36 -13.12 -0.14 -4.83 16 10 C 0.08 0.82 11.14 -17.38 -0.19 0.62 16 11 C 0.52 7.02 7.12 -10.99 -0.08 6.94 16 12 O -0.52 -9.26 15.92 -14.30 -0.23 -9.49 16 13 N -0.60 -7.36 2.97 -172.48 -0.51 -7.87 16 14 C 0.10 0.91 5.00 -3.49 -0.02 0.89 16 15 C -0.14 -1.53 6.10 -26.39 -0.16 -1.69 16 16 C -0.11 -1.68 4.45 -26.69 -0.12 -1.80 16 17 C -0.12 -1.91 2.55 -90.48 -0.23 -2.14 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.06 5.15 -4.04 -0.02 3.04 16 20 N -0.60 -14.39 2.81 -181.12 -0.51 -14.90 16 21 C 0.16 3.96 8.99 59.85 0.54 4.50 16 22 C -0.25 -6.50 8.06 -15.06 -0.12 -6.62 16 23 H 0.07 1.80 6.93 -52.49 -0.36 1.44 16 24 C 0.00 -0.05 4.98 -17.43 -0.09 -0.13 16 25 N -0.90 -26.03 10.79 55.49 0.60 -25.43 16 26 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 C 0.12 1.65 5.72 -3.69 -0.02 1.63 16 31 H 0.09 0.49 5.39 -51.93 -0.28 0.21 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.42 6.98 -51.93 -0.36 0.06 16 34 H 0.14 0.81 5.61 -52.49 -0.29 0.52 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.51 4.65 -51.93 -0.24 0.26 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.76 6.02 -51.93 -0.31 1.45 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 45 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 46 H 0.03 0.73 7.48 -51.93 -0.39 0.34 16 47 H 0.04 1.11 7.14 -51.93 -0.37 0.74 16 48 H 0.00 -0.05 8.04 -51.93 -0.42 -0.46 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -33.02 395.67 -9.52 -42.55 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.89 Total: -1.21 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.42 Total: 2.75 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.56 Total: -53.03 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.60 Total: -13.18 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.02 -9.52 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.553 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds