Wall clock time and date at job start Wed Apr 1 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47106 * 2 1 4 4 O 1.42902 * 109.47113 * 120.00016 * 2 1 3 5 5 C 1.35911 * 116.99903 * 274.67608 * 4 2 1 6 6 C 1.39132 * 120.47419 * 5.36943 * 5 4 2 7 7 C 1.38548 * 118.37241 * 180.29569 * 6 5 4 8 8 C 1.38247 * 119.21729 * 359.43503 * 7 6 5 9 9 N 1.31849 * 120.88947 * 0.58023 * 8 7 6 10 10 C 1.31837 * 121.78054 * 359.72071 * 9 8 7 11 11 C 1.50698 * 109.47433 * 240.00463 * 2 1 3 12 12 O 1.21277 * 119.99970 * 245.00165 * 11 2 1 13 13 N 1.34776 * 119.99987 * 64.99573 * 11 2 1 14 14 C 1.46922 * 120.63222 * 359.72252 * 13 11 2 15 15 C 1.53625 * 108.54362 * 126.37051 * 14 13 11 16 16 C 1.53035 * 109.24212 * 54.85583 * 15 14 13 17 17 C 1.53039 * 109.54015 * 298.51258 * 16 15 14 18 18 H 1.09004 * 109.52737 * 301.39980 * 17 16 15 19 19 C 1.53000 * 109.49852 * 181.31693 * 17 16 15 20 20 N 1.46495 * 109.47109 * 65.16034 * 19 17 16 21 21 C 1.46504 * 119.99755 * 90.00034 * 20 19 17 22 22 C 1.36934 * 120.00289 * 269.99869 * 20 19 17 23 23 H 1.08000 * 119.99591 * 18.19065 * 22 20 19 24 24 C 1.38813 * 119.99941 * 198.18735 * 22 20 19 25 25 N 1.31616 * 120.00180 * 19.02354 * 24 22 20 26 26 Si 1.86795 * 119.99901 * 199.01449 * 24 22 20 27 27 H 1.48501 * 109.47158 * 90.00383 * 26 24 22 28 28 H 1.48503 * 109.47332 * 210.00439 * 26 24 22 29 29 H 1.48498 * 109.47454 * 330.00835 * 26 24 22 30 30 C 1.46929 * 120.63043 * 180.02562 * 13 11 2 31 31 H 1.09001 * 109.47263 * 59.99685 * 1 2 3 32 32 H 1.09005 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47102 * 299.99574 * 1 2 3 34 34 H 1.07995 * 120.81749 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.38649 * 179.72542 * 7 6 5 36 36 H 1.08008 * 119.55447 * 180.27718 * 8 7 6 37 37 H 1.08003 * 119.66117 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.59094 * 246.20493 * 14 13 11 39 39 H 1.09005 * 109.58526 * 6.62897 * 14 13 11 40 40 H 1.08998 * 109.63231 * 294.86417 * 15 14 13 41 41 H 1.08998 * 109.45601 * 174.74329 * 15 14 13 42 42 H 1.09005 * 109.46089 * 178.49139 * 16 15 14 43 43 H 1.08998 * 109.44893 * 58.52842 * 16 15 14 44 44 H 1.09004 * 109.47192 * 185.16659 * 19 17 16 45 45 H 1.08999 * 109.47230 * 305.15873 * 19 17 16 46 46 H 1.09003 * 109.47228 * 94.55902 * 21 20 19 47 47 H 1.08997 * 109.46923 * 214.55866 * 21 20 19 48 48 H 1.09000 * 109.47346 * 334.56018 * 21 20 19 49 49 H 0.97004 * 120.00385 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.58330 * 353.37453 * 30 13 11 51 51 H 1.09003 * 109.58728 * 113.79605 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1189 0.0643 2.3025 6 6 1.6757 1.3827 2.3342 7 6 1.8173 2.0968 3.5130 8 6 2.3790 1.4773 4.6139 9 7 2.7890 0.2258 4.5505 10 6 2.6778 -0.4862 3.4465 11 6 2.0324 -0.7103 -1.2305 12 8 2.6530 -1.7465 -1.1216 13 7 1.7919 -0.1940 -2.4520 14 6 1.0362 1.0572 -2.6004 15 6 1.8682 2.0330 -3.4464 16 6 2.2391 1.3624 -4.7710 17 6 3.0885 0.1196 -4.4953 18 1 3.9860 0.4059 -3.9470 19 6 3.4862 -0.5316 -5.8214 20 7 4.3629 0.3749 -6.5670 21 6 5.8145 0.3082 -6.3805 22 6 3.8256 1.2845 -7.4382 23 1 2.7796 1.5448 -7.3700 24 6 4.6253 1.8721 -8.4088 25 7 5.7673 1.3125 -8.7478 26 14 4.0805 3.4568 -9.2340 27 1 4.5929 4.6179 -8.4630 28 1 4.6184 3.5049 -10.6174 29 1 2.5970 3.5077 -9.2777 30 6 2.2748 -0.8752 -3.6609 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.2360 1.8398 1.4601 35 1 1.4885 3.1238 3.5725 36 1 2.4879 2.0275 5.5370 37 1 3.0254 -1.5086 3.4326 38 1 0.0879 0.8546 -3.0981 39 1 0.8501 1.4904 -1.6176 40 1 2.7768 2.3019 -2.9077 41 1 1.2834 2.9313 -3.6445 42 1 2.8068 2.0613 -5.3854 43 1 1.3301 1.0716 -5.2976 44 1 4.0125 -1.4656 -5.6242 45 1 2.5910 -0.7361 -6.4087 46 1 6.2500 -0.3345 -7.1457 47 1 6.2377 1.3092 -6.4628 48 1 6.0358 -0.1000 -5.3943 49 1 6.3260 1.7228 -9.4264 50 1 2.9062 -1.7175 -3.3782 51 1 1.4253 -1.2320 -4.2433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266466963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:28 Heat of formation + Delta-G solvation = -23.758601 kcal Electronic energy + Delta-G solvation = -31132.977294 eV Core-core repulsion = 27033.100264 eV Total energy + Delta-G solvation = -4099.877030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07864 -41.14686 -39.48675 -38.62687 -37.23700 -34.80433 -33.32552 -33.14635 -32.91298 -31.80197 -30.95168 -28.04212 -27.39790 -26.96917 -25.41624 -24.62217 -24.01264 -23.54134 -22.60122 -21.04187 -20.25377 -19.61049 -18.64719 -18.19092 -17.83366 -17.43678 -17.08288 -16.90816 -16.57447 -16.06895 -15.75249 -15.49839 -15.29367 -15.12644 -15.00043 -14.92498 -14.78734 -14.48437 -14.38571 -13.94403 -13.84719 -13.77318 -13.41481 -13.28566 -13.11117 -12.87928 -12.74787 -12.60900 -12.52811 -12.35692 -12.29621 -12.11875 -11.93477 -11.87648 -11.66926 -11.41150 -11.16558 -10.90016 -10.70626 -10.58426 -10.55819 -9.70694 -9.48123 -8.78715 -7.79530 -5.21076 0.13954 0.22884 1.36654 1.43117 1.48302 1.49790 1.57973 2.33027 2.54714 2.79407 3.20419 3.33102 3.50680 3.57590 3.65702 3.74241 3.77439 3.85183 3.89420 3.99306 4.07978 4.14052 4.25338 4.31248 4.40724 4.45250 4.52729 4.57423 4.64605 4.71638 4.76587 4.78713 4.81761 4.88228 4.91221 4.99535 5.01429 5.07640 5.12423 5.20415 5.23511 5.34762 5.42247 5.50629 5.59587 5.62697 5.65790 5.74002 6.11616 6.31697 6.33962 6.96234 6.99851 7.16773 7.90594 8.35827 9.25869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.002204 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.667601 B =12702.336930 C =12939.485469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 H 0.122 0.878 4 O -0.306 6.306 5 C 0.067 3.933 6 C -0.167 4.167 7 C -0.120 4.120 8 C 0.046 3.954 9 N -0.474 5.474 10 C 0.051 3.949 11 C 0.511 3.489 12 O -0.575 6.575 13 N -0.597 5.597 14 C 0.097 3.903 15 C -0.130 4.130 16 C -0.109 4.109 17 C -0.102 4.102 18 H 0.041 0.959 19 C 0.155 3.845 20 N -0.614 5.614 21 C 0.178 3.822 22 C -0.241 4.241 23 H 0.085 0.915 24 C -0.065 4.065 25 N -0.944 5.944 26 Si 0.962 3.038 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.262 1.262 30 C 0.125 3.875 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.156 0.844 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.053 0.947 46 H 0.000 1.000 47 H 0.017 0.983 48 H 0.021 0.979 49 H 0.244 0.756 50 H 0.067 0.933 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.419 5.022 23.432 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.009 3.991 3 H 0.139 0.861 4 O -0.218 6.218 5 C 0.019 3.981 6 C -0.193 4.193 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.183 5.183 10 C -0.107 4.107 11 C 0.298 3.702 12 O -0.454 6.454 13 N -0.330 5.330 14 C -0.024 4.024 15 C -0.168 4.168 16 C -0.147 4.147 17 C -0.124 4.124 18 H 0.059 0.941 19 C 0.028 3.972 20 N -0.337 5.337 21 C 0.032 3.968 22 C -0.371 4.371 23 H 0.103 0.897 24 C -0.259 4.259 25 N -0.592 5.592 26 Si 0.791 3.209 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.186 1.186 30 C 0.002 3.998 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.174 0.826 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.018 0.982 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.053 0.947 50 H 0.086 0.914 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.587 3.912 24.058 28.931 hybrid contribution 0.403 0.833 -1.799 2.023 sum -15.184 4.746 22.259 27.359 Atomic orbital electron populations 1.22548 0.89806 1.04751 1.06317 1.22375 0.97659 0.97052 0.81968 0.86056 1.86208 1.81447 1.37746 1.16427 1.20352 0.97682 0.92410 0.87639 1.22140 1.02717 0.92770 1.01661 1.22434 0.97118 1.02525 0.91804 1.23281 0.96620 0.90606 1.00551 1.67741 1.15888 1.08965 1.25755 1.22268 1.00078 1.01279 0.87046 1.20656 0.79351 0.85067 0.85087 1.90716 1.42204 1.25795 1.86674 1.48096 1.54693 1.25649 1.04598 1.22449 0.94997 0.82329 1.02653 1.22006 1.00317 0.98875 0.95584 1.21515 0.99100 0.96621 0.97467 1.21921 0.97432 0.96637 0.96436 0.94051 1.20838 0.93861 0.91190 0.91315 1.44137 1.01925 1.40480 1.47186 1.20477 0.83954 0.98137 0.94200 1.19575 0.95685 1.14702 1.07136 0.89713 1.25708 0.98301 1.03001 0.98911 1.70295 1.15481 1.39607 1.33801 0.85317 0.78386 0.80467 0.76695 1.21700 1.23069 1.18591 1.21548 0.98733 0.94896 0.84580 0.86947 0.91813 0.88683 0.81402 0.80576 0.79924 0.82627 0.88233 0.86667 0.92871 0.88294 0.92447 0.91639 0.94525 0.92844 0.98170 0.96380 0.96069 0.94651 0.91427 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.77 71.98 0.63 -1.17 16 2 C 0.07 1.20 1.81 29.85 0.05 1.25 16 3 H 0.12 1.45 5.63 -2.38 -0.01 1.44 16 4 O -0.31 -7.20 9.35 -73.56 -0.69 -7.89 16 5 C 0.07 1.31 6.62 22.60 0.15 1.46 16 6 C -0.17 -2.05 8.36 22.56 0.19 -1.87 16 7 C -0.12 -1.16 10.11 22.35 0.23 -0.93 16 8 C 0.05 0.63 11.18 84.69 0.95 1.58 16 9 N -0.47 -9.77 10.36 -195.44 -2.02 -11.79 16 10 C 0.05 1.10 11.14 84.80 0.94 2.05 16 11 C 0.51 13.22 7.12 87.66 0.62 13.84 16 12 O -0.57 -21.05 15.92 15.97 0.25 -20.80 16 13 N -0.60 -13.24 2.97 -818.00 -2.43 -15.66 16 14 C 0.10 1.31 5.00 86.51 0.43 1.74 16 15 C -0.13 -2.43 6.10 30.82 0.19 -2.24 16 16 C -0.11 -3.07 4.45 30.62 0.14 -2.93 16 17 C -0.10 -3.25 2.55 -10.71 -0.03 -3.28 16 18 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 19 C 0.15 5.99 5.15 86.38 0.45 6.43 16 20 N -0.61 -29.94 2.81 -726.93 -2.04 -31.98 16 21 C 0.18 9.00 8.99 127.77 1.15 10.15 16 22 C -0.24 -12.48 8.06 84.03 0.68 -11.80 16 23 H 0.09 4.11 6.93 -2.91 -0.02 4.09 16 24 C -0.07 -3.58 4.98 84.86 0.42 -3.16 16 25 N -0.94 -56.18 10.79 21.65 0.23 -55.94 16 26 Si 0.96 43.90 29.59 68.60 2.03 45.93 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 30 C 0.13 3.38 5.72 86.37 0.49 3.88 16 31 H 0.11 0.58 5.39 -2.39 -0.01 0.57 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 0.61 6.98 -2.39 -0.02 0.60 16 34 H 0.17 1.01 5.61 -2.91 -0.02 0.99 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 36 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.12 0.76 4.65 -2.38 -0.01 0.75 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 2.06 6.02 -2.38 -0.01 2.05 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.41 8.07 -2.38 -0.02 1.39 16 45 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 46 H 0.00 0.00 7.48 -2.39 -0.02 -0.02 16 47 H 0.02 0.97 7.14 -2.39 -0.02 0.95 16 48 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 49 H 0.24 14.25 8.31 -92.71 -0.77 13.47 16 50 H 0.07 2.15 7.01 -2.39 -0.02 2.13 16 51 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.58 395.67 3.95 -73.63 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.93 Total: 9.51 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.68 Total: 15.00 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -6.26 Total: -115.38 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.43 Total: -28.68 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.58 3.95 -73.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.871 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds