Wall clock time and date at job start Wed Apr 1 2020 04:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47063 * 2 1 4 4 O 1.42902 * 109.47083 * 239.99594 * 2 1 3 5 5 C 1.35915 * 116.99471 * 86.40725 * 4 2 1 6 6 C 1.39145 * 120.47625 * 354.57541 * 5 4 2 7 7 C 1.38532 * 118.37632 * 180.02562 * 6 5 4 8 8 C 1.38258 * 119.21885 * 359.97438 * 7 6 5 9 9 N 1.31839 * 120.88911 * 0.02562 * 8 7 6 10 10 C 1.31846 * 121.78180 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46997 * 120.00331 * 2 1 3 12 12 O 1.21284 * 120.00141 * 104.47528 * 11 2 1 13 13 N 1.34772 * 119.99787 * 284.47050 * 11 2 1 14 14 C 1.46931 * 120.63243 * 4.62872 * 13 11 2 15 15 C 1.53630 * 108.54079 * 126.36713 * 14 13 11 16 16 C 1.53044 * 109.23915 * 54.86219 * 15 14 13 17 17 C 1.53041 * 109.53760 * 298.50678 * 16 15 14 18 18 H 1.09003 * 109.52336 * 301.39924 * 17 16 15 19 19 C 1.52998 * 109.49917 * 181.32263 * 17 16 15 20 20 N 1.46499 * 109.47118 * 65.15832 * 19 17 16 21 21 C 1.46498 * 119.99973 * 90.00726 * 20 19 17 22 22 C 1.36935 * 120.00225 * 270.00051 * 20 19 17 23 23 H 1.08008 * 119.99806 * 20.88915 * 22 20 19 24 24 C 1.38815 * 120.00497 * 200.89090 * 22 20 19 25 25 N 1.31623 * 119.99398 * 11.66378 * 24 22 20 26 26 Si 1.86797 * 120.00399 * 191.66655 * 24 22 20 27 27 H 1.48503 * 109.46943 * 89.99746 * 26 24 22 28 28 H 1.48492 * 109.47313 * 209.99913 * 26 24 22 29 29 H 1.48506 * 109.46904 * 330.00063 * 26 24 22 30 30 C 1.46928 * 120.63278 * 184.91306 * 13 11 2 31 31 H 1.09000 * 109.46853 * 303.31491 * 1 2 3 32 32 H 1.08993 * 109.46765 * 63.31692 * 1 2 3 33 33 H 1.09005 * 109.47009 * 183.31847 * 1 2 3 34 34 H 1.08000 * 120.80673 * 0.03829 * 6 5 4 35 35 H 1.07995 * 120.39077 * 180.02562 * 7 6 5 36 36 H 1.08004 * 119.55476 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.65989 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.58574 * 246.20300 * 14 13 11 39 39 H 1.08999 * 109.58319 * 6.63130 * 14 13 11 40 40 H 1.08995 * 109.63342 * 294.86639 * 15 14 13 41 41 H 1.09002 * 109.45428 * 174.73742 * 15 14 13 42 42 H 1.09000 * 109.45839 * 178.48831 * 16 15 14 43 43 H 1.09002 * 109.44951 * 58.52289 * 16 15 14 44 44 H 1.09000 * 109.47184 * 185.16283 * 19 17 16 45 45 H 1.09007 * 109.46698 * 305.15841 * 19 17 16 46 46 H 1.08997 * 109.47779 * 94.68195 * 21 20 19 47 47 H 1.09004 * 109.47191 * 214.68574 * 21 20 19 48 48 H 1.08999 * 109.47037 * 334.67679 * 21 20 19 49 49 H 0.96999 * 119.99518 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.58098 * 353.36790 * 30 13 11 51 51 H 1.09001 * 109.59091 * 113.79456 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1405 0.0695 -2.2968 6 6 1.7168 1.3946 -2.3243 7 6 1.8738 2.1117 -3.4992 8 6 2.4422 1.4925 -4.5970 9 7 2.8332 0.2348 -4.5376 10 6 2.7016 -0.4822 -3.4390 11 6 2.0324 -0.7105 1.2304 12 8 2.4820 -1.8334 1.1413 13 7 1.9820 -0.0981 2.4299 14 6 1.3487 1.2202 2.5714 15 6 0.2922 1.1377 3.6838 16 6 0.9479 0.6151 4.9642 17 6 1.4997 -0.7912 4.7194 18 1 0.6902 -1.4510 4.4073 19 6 2.1257 -1.3258 6.0090 20 7 1.0834 -1.4937 7.0247 21 6 0.3664 -2.7665 7.1349 22 6 0.7793 -0.4611 7.8711 23 1 1.0367 0.5524 7.6007 24 6 0.1403 -0.7168 9.0766 25 7 0.0315 -1.9534 9.5143 26 14 -0.5651 0.6938 10.0775 27 1 -1.9719 0.9362 9.6682 28 1 -0.5223 0.3467 11.5206 29 1 0.2380 1.9200 9.8392 30 6 2.5648 -0.7331 3.6198 31 1 -0.3633 0.5644 0.8588 32 1 -0.3632 0.4615 -0.9182 33 1 -0.3633 -1.0260 0.0595 34 1 1.2766 1.8528 -1.4511 35 1 1.5567 3.1424 -3.5566 36 1 2.5675 2.0466 -5.5155 37 1 3.0341 -1.5097 -3.4284 38 1 2.1031 1.9617 2.8343 39 1 0.8711 1.4988 1.6321 40 1 -0.5061 0.4603 3.3812 41 1 -0.1215 2.1296 3.8658 42 1 0.2074 0.5806 5.7633 43 1 1.7623 1.2798 5.2523 44 1 2.5991 -2.2876 5.8116 45 1 2.8739 -0.6197 6.3695 46 1 0.8454 -3.3892 7.8904 47 1 -0.6678 -2.5772 7.4225 48 1 0.3880 -3.2801 6.1737 49 1 -0.4153 -2.1321 10.3565 50 1 2.8899 -1.7437 3.3723 51 1 3.4164 -0.1476 3.9665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266466964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:37 Heat of formation + Delta-G solvation = -5.141701 kcal Electronic energy + Delta-G solvation = -31072.671370 eV Core-core repulsion = 26973.601629 eV Total energy + Delta-G solvation = -4099.069741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30680 -40.26825 -38.61784 -37.45075 -35.62785 -33.46083 -32.62749 -32.17953 -31.71423 -30.52842 -30.06270 -26.32251 -25.86105 -25.73869 -24.68325 -23.92754 -22.97480 -22.42215 -21.25240 -19.75413 -19.10238 -18.92378 -17.42344 -17.17491 -16.73431 -16.57422 -16.08299 -15.84575 -15.13759 -15.06425 -14.81229 -14.42841 -14.27286 -14.14722 -13.97726 -13.84855 -13.46327 -13.33553 -13.19420 -12.90778 -12.79627 -12.62260 -12.45051 -12.34977 -11.94386 -11.75164 -11.58614 -11.31432 -11.01077 -10.87199 -10.76364 -10.63401 -10.35562 -10.33408 -10.23610 -10.07232 -9.98497 -9.83582 -9.77564 -9.67400 -8.82424 -8.65252 -8.52700 -6.75467 -5.72202 -3.17138 0.72535 0.82299 2.19280 2.40085 3.16835 3.34950 3.39934 3.40714 3.43032 3.99983 4.13052 4.17161 4.32422 4.38785 4.45865 4.47657 4.65966 4.67964 4.80645 4.96049 5.03031 5.09349 5.15766 5.23866 5.30018 5.33686 5.42418 5.54217 5.59387 5.62640 5.63763 5.68491 5.83018 5.86430 5.93680 5.99810 6.06543 6.13323 6.30065 6.51086 6.55699 6.64187 6.79496 6.80201 6.95927 6.97274 7.26255 7.43003 7.57120 7.73080 7.81704 7.99463 8.38817 9.23803 9.88043 10.36951 11.32713 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.002086 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.726184 B =13421.893685 C =14031.936733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.095 0.905 4 O -0.277 6.277 5 C 0.084 3.916 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.518 3.482 12 O -0.518 6.518 13 N -0.601 5.601 14 C 0.098 3.902 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.118 4.118 18 H 0.066 0.934 19 C 0.158 3.842 20 N -0.601 5.601 21 C 0.165 3.835 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.002 4.002 25 N -0.909 5.909 26 Si 0.902 3.098 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.117 3.883 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.027 0.973 47 H 0.044 0.956 48 H -0.005 1.005 49 H 0.251 0.749 50 H 0.089 0.911 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 10.504 -23.708 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 H 0.112 0.888 4 O -0.188 6.188 5 C 0.036 3.964 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.304 3.696 12 O -0.393 6.393 13 N -0.336 5.336 14 C -0.024 4.024 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.140 4.140 18 H 0.085 0.915 19 C 0.030 3.970 20 N -0.323 5.323 21 C 0.020 3.980 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.200 4.200 25 N -0.554 5.554 26 Si 0.733 3.267 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.005 4.005 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.013 0.987 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.305 9.212 -24.261 26.053 hybrid contribution -1.039 1.509 1.501 2.368 sum 1.266 10.720 -22.760 25.190 Atomic orbital electron populations 1.22433 0.92224 1.05114 1.03967 1.22299 0.96148 0.96762 0.84108 0.88752 1.86261 1.80623 1.35965 1.15933 1.20290 0.96483 0.91118 0.88513 1.21786 1.03727 0.93927 1.00270 1.22011 0.98728 1.01175 0.93017 1.22698 0.97499 0.91228 0.98840 1.67758 1.14907 1.07381 1.25503 1.22289 0.98628 1.01044 0.86245 1.19909 0.79386 0.86510 0.83833 1.90742 1.45212 1.17974 1.85360 1.48056 1.57721 1.20037 1.07773 1.22077 0.96290 0.84121 0.99960 1.22045 0.97529 1.01724 0.95994 1.21614 1.01183 0.95370 0.96741 1.22240 0.97818 0.97694 0.96293 0.91519 1.20663 0.90815 0.97823 0.87735 1.43868 1.39534 1.12812 1.36088 1.20785 0.96864 0.86304 0.94049 1.19222 1.34390 0.87453 0.96839 0.91011 1.25023 1.02108 0.96186 0.96702 1.70088 1.46578 1.17617 1.21138 0.86287 0.79150 0.81708 0.79590 1.21626 1.21823 1.20559 1.21813 0.96052 0.99040 0.83549 0.89445 0.90720 0.90200 0.84159 0.84369 0.82457 0.81713 0.90981 0.90419 0.91686 0.91007 0.88733 0.92675 0.94448 0.93423 0.95418 0.93731 0.98674 0.93825 0.89223 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.85 37.16 0.33 -1.12 16 2 C 0.07 0.67 1.78 -27.88 -0.05 0.62 16 3 H 0.09 0.70 5.42 -51.93 -0.28 0.42 16 4 O -0.28 -3.29 9.39 -38.89 -0.37 -3.66 16 5 C 0.08 0.84 6.63 -39.07 -0.26 0.58 16 6 C -0.17 -1.29 8.39 -39.14 -0.33 -1.62 16 7 C -0.13 -0.83 10.11 -39.47 -0.40 -1.23 16 8 C 0.05 0.41 11.18 -17.54 -0.20 0.21 16 9 N -0.45 -4.53 10.35 -13.12 -0.14 -4.67 16 10 C 0.08 0.78 11.14 -17.37 -0.19 0.59 16 11 C 0.52 7.03 7.01 -10.99 -0.08 6.95 16 12 O -0.52 -9.25 15.99 -13.86 -0.22 -9.48 16 13 N -0.60 -7.42 2.97 -172.49 -0.51 -7.94 16 14 C 0.10 0.91 5.75 -3.48 -0.02 0.89 16 15 C -0.13 -1.50 6.10 -26.38 -0.16 -1.66 16 16 C -0.11 -1.68 4.44 -26.69 -0.12 -1.79 16 17 C -0.12 -1.91 2.54 -90.50 -0.23 -2.14 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.16 3.07 5.15 -4.04 -0.02 3.05 16 20 N -0.60 -14.42 2.81 -181.12 -0.51 -14.92 16 21 C 0.16 4.03 8.96 59.85 0.54 4.57 16 22 C -0.25 -6.44 8.16 -15.06 -0.12 -6.57 16 23 H 0.07 1.77 6.76 -52.48 -0.35 1.42 16 24 C 0.00 -0.06 5.13 -17.43 -0.09 -0.15 16 25 N -0.91 -26.13 10.51 55.49 0.58 -25.54 16 26 Si 0.90 21.22 29.57 -169.99 -5.03 16.19 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 C 0.12 1.65 5.72 -3.71 -0.02 1.63 16 31 H 0.09 0.59 6.02 -51.93 -0.31 0.28 16 32 H 0.07 0.48 7.16 -51.93 -0.37 0.11 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.14 0.76 5.70 -52.49 -0.30 0.46 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.51 4.28 -51.93 -0.22 0.29 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.75 5.97 -51.93 -0.31 1.44 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 45 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 46 H 0.03 0.74 7.43 -51.93 -0.39 0.35 16 47 H 0.04 1.17 7.13 -51.93 -0.37 0.80 16 48 H -0.01 -0.12 8.04 -51.93 -0.42 -0.53 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -32.87 396.42 -9.52 -42.39 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.89 Total: -1.19 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.42 Total: 2.83 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.57 Total: -53.07 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.59 Total: -13.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.87 -9.52 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.249 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds