Wall clock time and date at job start Wed Apr 1 2020 04:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47063 * 2 1 4 4 O 1.42902 * 109.47083 * 239.99594 * 2 1 3 5 5 C 1.35915 * 116.99471 * 86.40725 * 4 2 1 6 6 C 1.39145 * 120.47625 * 354.57541 * 5 4 2 7 7 C 1.38532 * 118.37632 * 180.02562 * 6 5 4 8 8 C 1.38258 * 119.21885 * 359.97438 * 7 6 5 9 9 N 1.31839 * 120.88911 * 0.02562 * 8 7 6 10 10 C 1.31846 * 121.78180 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46997 * 120.00331 * 2 1 3 12 12 O 1.21284 * 120.00141 * 104.47528 * 11 2 1 13 13 N 1.34772 * 119.99787 * 284.47050 * 11 2 1 14 14 C 1.46931 * 120.63243 * 4.62872 * 13 11 2 15 15 C 1.53630 * 108.54079 * 126.36713 * 14 13 11 16 16 C 1.53044 * 109.23915 * 54.86219 * 15 14 13 17 17 C 1.53041 * 109.53760 * 298.50678 * 16 15 14 18 18 H 1.09003 * 109.52336 * 301.39924 * 17 16 15 19 19 C 1.52998 * 109.49917 * 181.32263 * 17 16 15 20 20 N 1.46499 * 109.47118 * 65.15832 * 19 17 16 21 21 C 1.46498 * 119.99973 * 90.00726 * 20 19 17 22 22 C 1.36935 * 120.00225 * 270.00051 * 20 19 17 23 23 H 1.08008 * 119.99806 * 20.88915 * 22 20 19 24 24 C 1.38815 * 120.00497 * 200.89090 * 22 20 19 25 25 N 1.31623 * 119.99398 * 11.66378 * 24 22 20 26 26 Si 1.86797 * 120.00399 * 191.66655 * 24 22 20 27 27 H 1.48503 * 109.46943 * 89.99746 * 26 24 22 28 28 H 1.48492 * 109.47313 * 209.99913 * 26 24 22 29 29 H 1.48506 * 109.46904 * 330.00063 * 26 24 22 30 30 C 1.46928 * 120.63278 * 184.91306 * 13 11 2 31 31 H 1.09000 * 109.46853 * 303.31491 * 1 2 3 32 32 H 1.08993 * 109.46765 * 63.31692 * 1 2 3 33 33 H 1.09005 * 109.47009 * 183.31847 * 1 2 3 34 34 H 1.08000 * 120.80673 * 0.03829 * 6 5 4 35 35 H 1.07995 * 120.39077 * 180.02562 * 7 6 5 36 36 H 1.08004 * 119.55476 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.65989 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.58574 * 246.20300 * 14 13 11 39 39 H 1.08999 * 109.58319 * 6.63130 * 14 13 11 40 40 H 1.08995 * 109.63342 * 294.86639 * 15 14 13 41 41 H 1.09002 * 109.45428 * 174.73742 * 15 14 13 42 42 H 1.09000 * 109.45839 * 178.48831 * 16 15 14 43 43 H 1.09002 * 109.44951 * 58.52289 * 16 15 14 44 44 H 1.09000 * 109.47184 * 185.16283 * 19 17 16 45 45 H 1.09007 * 109.46698 * 305.15841 * 19 17 16 46 46 H 1.08997 * 109.47779 * 94.68195 * 21 20 19 47 47 H 1.09004 * 109.47191 * 214.68574 * 21 20 19 48 48 H 1.08999 * 109.47037 * 334.67679 * 21 20 19 49 49 H 0.96999 * 119.99518 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.58098 * 353.36790 * 30 13 11 51 51 H 1.09001 * 109.59091 * 113.79456 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1405 0.0695 -2.2968 6 6 1.7168 1.3946 -2.3243 7 6 1.8738 2.1117 -3.4992 8 6 2.4422 1.4925 -4.5970 9 7 2.8332 0.2348 -4.5376 10 6 2.7016 -0.4822 -3.4390 11 6 2.0324 -0.7105 1.2304 12 8 2.4820 -1.8334 1.1413 13 7 1.9820 -0.0981 2.4299 14 6 1.3487 1.2202 2.5714 15 6 0.2922 1.1377 3.6838 16 6 0.9479 0.6151 4.9642 17 6 1.4997 -0.7912 4.7194 18 1 0.6902 -1.4510 4.4073 19 6 2.1257 -1.3258 6.0090 20 7 1.0834 -1.4937 7.0247 21 6 0.3664 -2.7665 7.1349 22 6 0.7793 -0.4611 7.8711 23 1 1.0367 0.5524 7.6007 24 6 0.1403 -0.7168 9.0766 25 7 0.0315 -1.9534 9.5143 26 14 -0.5651 0.6938 10.0775 27 1 -1.9719 0.9362 9.6682 28 1 -0.5223 0.3467 11.5206 29 1 0.2380 1.9200 9.8392 30 6 2.5648 -0.7331 3.6198 31 1 -0.3633 0.5644 0.8588 32 1 -0.3632 0.4615 -0.9182 33 1 -0.3633 -1.0260 0.0595 34 1 1.2766 1.8528 -1.4511 35 1 1.5567 3.1424 -3.5566 36 1 2.5675 2.0466 -5.5155 37 1 3.0341 -1.5097 -3.4284 38 1 2.1031 1.9617 2.8343 39 1 0.8711 1.4988 1.6321 40 1 -0.5061 0.4603 3.3812 41 1 -0.1215 2.1296 3.8658 42 1 0.2074 0.5806 5.7633 43 1 1.7623 1.2798 5.2523 44 1 2.5991 -2.2876 5.8116 45 1 2.8739 -0.6197 6.3695 46 1 0.8454 -3.3892 7.8904 47 1 -0.6678 -2.5772 7.4225 48 1 0.3880 -3.2801 6.1737 49 1 -0.4153 -2.1321 10.3565 50 1 2.8899 -1.7437 3.3723 51 1 3.4164 -0.1476 3.9665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266466964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:36 Heat of formation + Delta-G solvation = -24.716295 kcal Electronic energy + Delta-G solvation = -31073.520188 eV Core-core repulsion = 26973.601629 eV Total energy + Delta-G solvation = -4099.918559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07226 -41.13987 -39.48636 -38.62606 -37.22128 -34.73902 -33.31915 -33.12836 -32.96954 -31.79620 -30.95648 -28.04879 -27.41767 -26.91809 -25.43511 -24.60931 -24.01947 -23.45947 -22.66954 -21.10642 -20.11668 -19.61831 -18.64510 -18.22586 -17.82660 -17.44485 -17.08061 -16.85096 -16.59805 -16.01978 -15.79239 -15.52263 -15.32778 -15.16971 -14.96852 -14.91609 -14.74637 -14.49892 -14.39663 -13.94459 -13.82042 -13.75248 -13.33898 -13.26535 -13.13165 -12.88865 -12.76018 -12.63340 -12.53836 -12.33218 -12.29721 -12.12041 -11.95680 -11.86500 -11.66224 -11.42388 -11.15826 -10.90029 -10.70647 -10.58299 -10.56886 -9.70842 -9.47585 -8.74475 -7.77045 -5.23721 0.14960 0.23861 1.33608 1.43443 1.48945 1.49447 1.58080 2.34187 2.54467 2.80290 3.19858 3.36561 3.50790 3.57860 3.66431 3.74935 3.76485 3.84087 3.90413 3.99502 4.09207 4.14892 4.25885 4.31566 4.40933 4.42395 4.53292 4.54643 4.60880 4.72329 4.76659 4.80215 4.82962 4.87674 4.91788 5.00244 5.02371 5.08015 5.11176 5.21542 5.26152 5.36893 5.42842 5.51296 5.60533 5.64453 5.68103 5.74617 6.12100 6.31775 6.36341 6.97233 6.99347 7.18932 7.91258 8.37053 9.27450 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.002086 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.726184 B =13421.893685 C =14031.936733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.130 0.870 4 O -0.307 6.307 5 C 0.066 3.934 6 C -0.166 4.166 7 C -0.119 4.119 8 C 0.047 3.953 9 N -0.474 5.474 10 C 0.051 3.949 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.599 5.599 14 C 0.096 3.904 15 C -0.128 4.128 16 C -0.109 4.109 17 C -0.102 4.102 18 H 0.042 0.958 19 C 0.155 3.845 20 N -0.615 5.615 21 C 0.181 3.819 22 C -0.240 4.240 23 H 0.085 0.915 24 C -0.067 4.067 25 N -0.947 5.947 26 Si 0.967 3.033 27 H -0.288 1.288 28 H -0.303 1.303 29 H -0.262 1.262 30 C 0.125 3.875 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.156 0.844 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.053 0.947 46 H 0.000 1.000 47 H 0.019 0.981 48 H 0.017 0.983 49 H 0.244 0.756 50 H 0.067 0.933 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 15.147 -25.759 29.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.147 0.853 4 O -0.219 6.219 5 C 0.019 3.981 6 C -0.192 4.192 7 C -0.138 4.138 8 C -0.110 4.110 9 N -0.184 5.184 10 C -0.107 4.107 11 C 0.298 3.702 12 O -0.453 6.453 13 N -0.332 5.332 14 C -0.025 4.025 15 C -0.166 4.166 16 C -0.147 4.147 17 C -0.124 4.124 18 H 0.060 0.940 19 C 0.028 3.972 20 N -0.338 5.338 21 C 0.036 3.964 22 C -0.370 4.370 23 H 0.103 0.897 24 C -0.260 4.260 25 N -0.596 5.596 26 Si 0.796 3.204 27 H -0.215 1.215 28 H -0.230 1.230 29 H -0.187 1.187 30 C 0.002 3.998 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.187 0.813 35 H 0.195 0.805 36 H 0.201 0.799 37 H 0.173 0.827 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.018 0.982 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.053 0.947 50 H 0.086 0.914 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.907 13.903 -26.350 29.854 hybrid contribution -0.856 0.082 2.034 2.209 sum 1.051 13.985 -24.316 28.070 Atomic orbital electron populations 1.22449 0.90612 1.04262 1.05937 1.22380 0.97101 0.97372 0.81912 0.85254 1.86224 1.81344 1.37461 1.16874 1.20365 0.97708 0.92335 0.87733 1.22135 1.02713 0.92622 1.01729 1.22433 0.96936 1.02635 0.91778 1.23288 0.96678 0.90528 1.00534 1.67743 1.16089 1.08876 1.25673 1.22259 1.00063 1.01227 0.87126 1.20680 0.78362 0.86002 0.85118 1.90716 1.47742 1.20556 1.86266 1.48120 1.57268 1.20970 1.06806 1.22375 0.96381 0.82642 1.01069 1.21989 0.97577 1.02695 0.94367 1.21515 1.00620 0.94582 0.97970 1.21913 0.97368 0.98108 0.95022 0.93966 1.20840 0.90072 0.98217 0.88071 1.44098 1.40605 1.12189 1.36934 1.20471 0.95150 0.86630 0.94168 1.19609 1.32637 0.88361 0.96395 0.89724 1.25831 1.03533 0.98370 0.98282 1.70275 1.48252 1.19647 1.21401 0.85252 0.78449 0.79509 0.77218 1.21545 1.23015 1.18673 1.21548 0.95755 0.98757 0.83760 0.87562 0.88474 0.92606 0.81323 0.80506 0.79925 0.82706 0.88647 0.86747 0.92547 0.88281 0.92429 0.91750 0.94573 0.92906 0.98174 0.96251 0.96457 0.94698 0.91413 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.85 71.98 0.64 -1.62 16 2 C 0.07 1.24 1.78 29.85 0.05 1.29 16 3 H 0.13 1.27 5.42 -2.39 -0.01 1.25 16 4 O -0.31 -7.08 9.39 -74.03 -0.69 -7.77 16 5 C 0.07 1.23 6.63 22.60 0.15 1.38 16 6 C -0.17 -1.84 8.39 22.56 0.19 -1.65 16 7 C -0.12 -0.99 10.11 22.34 0.23 -0.77 16 8 C 0.05 0.59 11.18 84.70 0.95 1.53 16 9 N -0.47 -9.29 10.35 -195.44 -2.02 -11.32 16 10 C 0.05 1.05 11.14 84.80 0.94 2.00 16 11 C 0.51 13.27 7.01 87.66 0.61 13.88 16 12 O -0.57 -21.09 15.99 15.52 0.25 -20.85 16 13 N -0.60 -13.41 2.97 -818.03 -2.43 -15.84 16 14 C 0.10 1.33 5.75 86.51 0.50 1.82 16 15 C -0.13 -2.38 6.10 30.82 0.19 -2.20 16 16 C -0.11 -3.07 4.44 30.62 0.14 -2.93 16 17 C -0.10 -3.26 2.54 -10.72 -0.03 -3.28 16 18 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 19 C 0.15 6.02 5.15 86.38 0.45 6.47 16 20 N -0.62 -30.05 2.81 -726.93 -2.04 -32.09 16 21 C 0.18 9.22 8.96 127.77 1.14 10.37 16 22 C -0.24 -12.43 8.16 84.03 0.69 -11.74 16 23 H 0.09 4.09 6.76 -2.91 -0.02 4.07 16 24 C -0.07 -3.65 5.13 84.86 0.44 -3.22 16 25 N -0.95 -56.34 10.51 21.65 0.23 -56.12 16 26 Si 0.97 43.94 29.57 68.60 2.03 45.97 16 27 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 30 C 0.12 3.40 5.72 86.36 0.49 3.89 16 31 H 0.11 0.93 6.02 -2.39 -0.01 0.92 16 32 H 0.10 0.84 7.16 -2.39 -0.02 0.82 16 33 H 0.05 1.01 8.14 -2.38 -0.02 1.00 16 34 H 0.17 0.79 5.70 -2.91 -0.02 0.78 16 35 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.78 4.28 -2.39 -0.01 0.77 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 2.07 5.97 -2.39 -0.01 2.05 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.04 1.40 8.07 -2.39 -0.02 1.38 16 45 H 0.05 1.99 8.04 -2.38 -0.02 1.97 16 46 H 0.00 0.00 7.43 -2.39 -0.02 -0.02 16 47 H 0.02 1.04 7.13 -2.38 -0.02 1.03 16 48 H 0.02 0.77 8.04 -2.39 -0.02 0.75 16 49 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.07 2.17 7.00 -2.38 -0.02 2.15 16 51 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -77.37 396.42 4.01 -73.36 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.93 Total: 9.42 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 7.76 Total: 15.23 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -6.26 Total: -115.36 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.45 Total: -28.62 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.37 4.01 -73.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266466964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.645 kcal (2) G-P(sol) polarization free energy of solvation -77.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds