Wall clock time and date at job start Wed Apr 1 2020 04:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47209 * 2 1 4 4 O 1.42899 * 109.47058 * 120.00571 * 2 1 3 5 5 C 1.42902 * 113.99882 * 269.99860 * 4 2 1 6 6 C 1.50692 * 109.47238 * 180.02562 * 5 4 2 7 7 C 1.38661 * 120.78436 * 269.71564 * 6 5 4 8 8 C 1.38210 * 119.15587 * 179.79627 * 7 6 5 9 9 N 1.31859 * 120.76867 * 0.49036 * 8 7 6 10 10 C 1.31871 * 121.72502 * 359.73953 * 9 8 7 11 11 C 1.38204 * 120.76422 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.46631 * 240.00118 * 2 1 3 13 13 O 1.21280 * 120.00232 * 244.99960 * 12 2 1 14 14 N 1.34776 * 120.00133 * 65.00547 * 12 2 1 15 15 C 1.46496 * 120.00390 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47631 * 154.99604 * 15 14 12 17 17 C 1.52997 * 109.47060 * 59.99933 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 N 1.46496 * 109.47487 * 179.97438 * 18 17 16 20 20 C 1.36933 * 120.00258 * 274.99944 * 19 18 17 21 21 H 1.07997 * 120.00195 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00104 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00154 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47219 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47003 * 120.00388 * 24 22 20 27 27 H 1.48496 * 109.47087 * 239.99988 * 24 22 20 28 28 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 29 29 C 1.52997 * 109.47452 * 59.99536 * 28 18 17 30 30 H 1.09002 * 109.46764 * 299.99811 * 1 2 3 31 31 H 1.09000 * 109.47100 * 59.99569 * 1 2 3 32 32 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46999 * 300.00188 * 5 4 2 34 34 H 1.08997 * 109.47604 * 59.99490 * 5 4 2 35 35 H 1.07991 * 120.41993 * 359.97438 * 7 6 5 36 36 H 1.08003 * 119.60751 * 180.20611 * 8 7 6 37 37 H 1.08002 * 119.61703 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.41447 * 180.02562 * 11 10 9 39 39 H 0.97001 * 120.00215 * 359.97438 * 14 12 2 40 40 H 1.09004 * 109.47374 * 34.99626 * 15 14 12 41 41 H 1.09002 * 109.47398 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47194 * 300.00282 * 16 15 14 43 43 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 45 45 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 46 46 H 0.97007 * 119.99693 * 95.00333 * 19 18 17 47 47 H 0.96996 * 120.00649 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.46935 * 299.99411 * 28 18 17 49 49 H 1.09001 * 109.46812 * 179.97438 * 28 18 17 50 50 H 1.08993 * 109.47194 * 179.97438 * 29 28 18 51 51 H 1.09002 * 109.46695 * 59.99734 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.2001 0.1827 2.2941 6 6 2.7015 -0.6284 3.4609 7 6 1.8148 -1.2045 4.3579 8 6 2.3113 -1.9453 5.4138 9 7 3.6105 -2.0987 5.5782 10 6 4.4828 -1.5615 4.7478 11 6 4.0603 -0.8116 3.6665 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1216 14 7 1.7919 -0.1941 -2.4520 15 6 2.2805 -0.8843 -3.6482 16 6 1.4087 -0.5061 -4.8473 17 6 1.4744 1.0063 -5.0687 18 6 2.9222 1.4197 -5.3402 19 7 2.9851 2.8678 -5.5528 20 6 2.7416 3.3886 -6.7956 21 1 2.5028 2.7319 -7.6190 22 6 2.8006 4.7608 -6.9969 23 7 3.0910 5.5613 -5.9933 24 14 2.4677 5.4712 -8.6922 25 1 2.1662 4.3689 -9.6404 26 1 1.3071 6.3951 -8.6225 27 1 3.6646 6.2146 -9.1611 28 6 3.7941 1.0414 -4.1411 29 6 3.7284 -0.4711 -3.9197 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.9321 0.9512 2.0450 34 1 1.2539 0.6546 2.5589 35 1 0.7497 -1.0783 4.2314 36 1 1.6271 -2.4001 6.1149 37 1 5.5396 -1.7092 4.9146 38 1 4.7795 -0.3746 2.9897 39 1 1.2953 0.6346 -2.5392 40 1 2.2338 -1.9619 -3.4905 41 1 1.7721 -1.0201 -5.7372 42 1 0.3772 -0.8005 -4.6538 43 1 0.8530 1.2760 -5.9226 44 1 1.1108 1.5199 -4.1787 45 1 3.2859 0.9061 -6.2302 46 1 3.1992 3.4577 -4.8131 47 1 3.1319 6.5201 -6.1338 48 1 3.4305 1.5550 -3.2511 49 1 4.8256 1.3355 -4.3348 50 1 4.3499 -0.7406 -3.0658 51 1 4.0920 -0.9846 -4.8098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266913979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:31 Heat of formation + Delta-G solvation = -46.576565 kcal Electronic energy + Delta-G solvation = -30271.921814 eV Core-core repulsion = 26171.055322 eV Total energy + Delta-G solvation = -4100.866491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.59164 -40.25781 -38.62729 -37.42768 -34.68505 -33.83615 -32.92696 -31.55837 -31.53297 -30.48671 -30.36365 -27.64027 -27.25290 -24.62255 -23.80525 -23.60972 -22.35753 -22.25379 -21.18196 -20.70743 -18.93534 -17.90401 -17.40857 -17.03667 -16.80026 -16.72161 -15.96803 -15.73403 -15.40163 -15.27095 -14.80503 -14.54544 -14.18029 -14.12649 -13.94833 -13.70544 -13.57624 -13.39611 -13.14181 -13.00874 -12.72590 -12.50579 -12.33628 -12.25070 -11.91066 -11.89784 -11.63479 -11.57486 -11.02894 -10.93227 -10.83230 -10.43690 -10.29847 -10.20222 -10.19034 -10.09232 -9.82740 -9.79014 -9.57215 -9.55552 -9.47729 -8.99686 -8.87580 -7.00022 -5.81449 -3.09860 0.77997 0.81048 2.58485 2.74000 3.39129 3.42476 3.45313 3.47191 3.76304 4.13662 4.31286 4.32373 4.52247 4.54350 4.63621 4.68679 4.74606 4.78428 4.93681 4.96497 4.98980 5.05622 5.13266 5.25811 5.27758 5.36565 5.44341 5.48118 5.51770 5.60160 5.60794 5.74998 5.76750 5.82030 5.90449 5.95315 5.99948 6.03831 6.27368 6.34061 6.34311 6.43672 6.46606 6.58883 6.65255 6.71442 6.92455 7.05094 7.51676 7.62631 7.66569 8.21766 8.37468 9.48663 10.07001 10.41313 11.41302 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.001926 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.741628 B =14532.910206 C =15047.943694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 H 0.089 0.911 4 O -0.349 6.349 5 C 0.097 3.903 6 C -0.043 4.043 7 C -0.152 4.152 8 C 0.094 3.906 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.515 3.485 13 O -0.524 6.524 14 N -0.715 5.715 15 C 0.150 3.850 16 C -0.126 4.126 17 C -0.135 4.135 18 C 0.177 3.823 19 N -0.725 5.725 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.402 0.598 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.382 0.618 47 H 0.254 0.746 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.631 -12.732 18.856 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.007 3.993 3 H 0.107 0.893 4 O -0.267 6.267 5 C 0.020 3.980 6 C -0.051 4.051 7 C -0.172 4.172 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.299 3.701 13 O -0.400 6.400 14 N -0.369 5.369 15 C 0.046 3.954 16 C -0.164 4.164 17 C -0.176 4.176 18 C 0.067 3.933 19 N -0.365 5.365 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.159 4.159 29 C -0.165 4.165 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.238 0.762 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.860 -14.132 19.443 24.344 hybrid contribution -0.775 1.975 -1.491 2.593 sum -4.634 -12.157 17.952 22.171 Atomic orbital electron populations 1.22237 0.93374 1.03840 1.03377 1.21958 0.95232 0.96571 0.85530 0.89277 1.88113 1.86625 1.33501 1.18447 1.21434 1.00261 0.91679 0.84590 1.19964 0.93700 0.96708 0.94728 1.22085 1.00984 0.98283 0.95812 1.22772 0.91988 0.95400 0.96085 1.67667 1.03396 1.19643 1.28562 1.22795 0.99756 0.93052 0.90438 1.22134 0.95915 0.99726 0.99063 1.20239 0.79967 0.85561 0.84315 1.90712 1.39564 1.23250 1.86429 1.46094 1.57596 1.27963 1.05232 1.20977 0.93935 0.96749 0.83751 1.21853 0.98953 0.98590 0.97016 1.22273 1.01325 0.92578 1.01387 1.20230 0.91523 0.86532 0.95002 1.42441 1.84019 1.00242 1.09827 1.19290 1.39369 0.90493 0.87626 0.91152 1.24738 1.02765 0.96157 0.97412 1.69661 1.55698 1.02977 1.29866 0.86146 0.77410 0.78943 0.83872 1.20569 1.21941 1.21905 1.21760 1.00740 0.94321 0.99093 1.21879 0.95756 0.97164 1.01680 0.91222 0.90571 0.91051 0.91539 0.91620 0.84609 0.82579 0.82478 0.84452 0.76199 0.89940 0.90576 0.92126 0.91628 0.93080 0.93512 0.78420 0.93603 0.92579 0.91960 0.91968 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.07 0.69 3.13 -27.88 -0.09 0.60 16 3 H 0.09 0.73 7.79 -51.93 -0.40 0.32 16 4 O -0.35 -4.04 9.51 -55.09 -0.52 -4.57 16 5 C 0.10 0.81 5.92 36.00 0.21 1.02 16 6 C -0.04 -0.39 5.55 -104.32 -0.58 -0.97 16 7 C -0.15 -1.23 9.82 -39.44 -0.39 -1.62 16 8 C 0.09 0.80 11.18 -17.55 -0.20 0.61 16 9 N -0.48 -4.97 10.36 -13.25 -0.14 -5.11 16 10 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 11 C -0.15 -1.33 9.82 -39.44 -0.39 -1.72 16 12 C 0.51 6.73 7.14 -10.99 -0.08 6.65 16 13 O -0.52 -9.04 16.17 -14.30 -0.23 -9.27 16 14 N -0.71 -8.39 4.19 -53.81 -0.23 -8.61 16 15 C 0.15 1.89 2.78 -67.93 -0.19 1.70 16 16 C -0.13 -1.54 5.61 -26.73 -0.15 -1.69 16 17 C -0.13 -2.09 5.33 -26.73 -0.14 -2.24 16 18 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 19 N -0.73 -17.19 5.12 -53.43 -0.27 -17.46 16 20 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 24 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C -0.12 -1.91 5.23 -26.73 -0.14 -2.05 16 29 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 30 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.49 8.05 -51.92 -0.42 0.07 16 34 H 0.07 0.41 7.83 -51.93 -0.41 0.00 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.40 4.21 6.65 -40.82 -0.27 3.94 16 40 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.77 6.51 -51.93 -0.34 0.43 16 45 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 46 H 0.38 9.69 7.80 -40.82 -0.32 9.38 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.06 0.88 7.60 -51.93 -0.39 0.48 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 414.30 15.07 6.24 6.24 Total: -1.00 -34.11 414.30 -10.38 -44.49 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.38 Total: 9.90 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.55 Total: -5.78 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.09 Total: -57.88 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.76 Total: -13.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.11 -10.38 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266913979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.084 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds