Wall clock time and date at job start Wed Apr 1 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47209 * 2 1 4 4 O 1.42899 * 109.47058 * 120.00571 * 2 1 3 5 5 C 1.42902 * 113.99882 * 269.99860 * 4 2 1 6 6 C 1.50692 * 109.47238 * 180.02562 * 5 4 2 7 7 C 1.38661 * 120.78436 * 269.71564 * 6 5 4 8 8 C 1.38210 * 119.15587 * 179.79627 * 7 6 5 9 9 N 1.31859 * 120.76867 * 0.49036 * 8 7 6 10 10 C 1.31871 * 121.72502 * 359.73953 * 9 8 7 11 11 C 1.38204 * 120.76422 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.46631 * 240.00118 * 2 1 3 13 13 O 1.21280 * 120.00232 * 244.99960 * 12 2 1 14 14 N 1.34776 * 120.00133 * 65.00547 * 12 2 1 15 15 C 1.46496 * 120.00390 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47631 * 154.99604 * 15 14 12 17 17 C 1.52997 * 109.47060 * 59.99933 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 N 1.46496 * 109.47487 * 179.97438 * 18 17 16 20 20 C 1.36933 * 120.00258 * 274.99944 * 19 18 17 21 21 H 1.07997 * 120.00195 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00104 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00154 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47219 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47003 * 120.00388 * 24 22 20 27 27 H 1.48496 * 109.47087 * 239.99988 * 24 22 20 28 28 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 29 29 C 1.52997 * 109.47452 * 59.99536 * 28 18 17 30 30 H 1.09002 * 109.46764 * 299.99811 * 1 2 3 31 31 H 1.09000 * 109.47100 * 59.99569 * 1 2 3 32 32 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46999 * 300.00188 * 5 4 2 34 34 H 1.08997 * 109.47604 * 59.99490 * 5 4 2 35 35 H 1.07991 * 120.41993 * 359.97438 * 7 6 5 36 36 H 1.08003 * 119.60751 * 180.20611 * 8 7 6 37 37 H 1.08002 * 119.61703 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.41447 * 180.02562 * 11 10 9 39 39 H 0.97001 * 120.00215 * 359.97438 * 14 12 2 40 40 H 1.09004 * 109.47374 * 34.99626 * 15 14 12 41 41 H 1.09002 * 109.47398 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47194 * 300.00282 * 16 15 14 43 43 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 45 45 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 46 46 H 0.97007 * 119.99693 * 95.00333 * 19 18 17 47 47 H 0.96996 * 120.00649 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.46935 * 299.99411 * 28 18 17 49 49 H 1.09001 * 109.46812 * 179.97438 * 28 18 17 50 50 H 1.08993 * 109.47194 * 179.97438 * 29 28 18 51 51 H 1.09002 * 109.46695 * 59.99734 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.2001 0.1827 2.2941 6 6 2.7015 -0.6284 3.4609 7 6 1.8148 -1.2045 4.3579 8 6 2.3113 -1.9453 5.4138 9 7 3.6105 -2.0987 5.5782 10 6 4.4828 -1.5615 4.7478 11 6 4.0603 -0.8116 3.6665 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1216 14 7 1.7919 -0.1941 -2.4520 15 6 2.2805 -0.8843 -3.6482 16 6 1.4087 -0.5061 -4.8473 17 6 1.4744 1.0063 -5.0687 18 6 2.9222 1.4197 -5.3402 19 7 2.9851 2.8678 -5.5528 20 6 2.7416 3.3886 -6.7956 21 1 2.5028 2.7319 -7.6190 22 6 2.8006 4.7608 -6.9969 23 7 3.0910 5.5613 -5.9933 24 14 2.4677 5.4712 -8.6922 25 1 2.1662 4.3689 -9.6404 26 1 1.3071 6.3951 -8.6225 27 1 3.6646 6.2146 -9.1611 28 6 3.7941 1.0414 -4.1411 29 6 3.7284 -0.4711 -3.9197 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.9321 0.9512 2.0450 34 1 1.2539 0.6546 2.5589 35 1 0.7497 -1.0783 4.2314 36 1 1.6271 -2.4001 6.1149 37 1 5.5396 -1.7092 4.9146 38 1 4.7795 -0.3746 2.9897 39 1 1.2953 0.6346 -2.5392 40 1 2.2338 -1.9619 -3.4905 41 1 1.7721 -1.0201 -5.7372 42 1 0.3772 -0.8005 -4.6538 43 1 0.8530 1.2760 -5.9226 44 1 1.1108 1.5199 -4.1787 45 1 3.2859 0.9061 -6.2302 46 1 3.1992 3.4577 -4.8131 47 1 3.1319 6.5201 -6.1338 48 1 3.4305 1.5550 -3.2511 49 1 4.8256 1.3355 -4.3348 50 1 4.3499 -0.7406 -3.0658 51 1 4.0920 -0.9846 -4.8098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266913979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:30 Heat of formation + Delta-G solvation = -67.828924 kcal Electronic energy + Delta-G solvation = -30272.843385 eV Core-core repulsion = 26171.055322 eV Total energy + Delta-G solvation = -4101.788063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43710 -41.07659 -39.64518 -38.45101 -36.24956 -34.63461 -34.22956 -32.81255 -32.16034 -31.69382 -31.58597 -29.12211 -27.88971 -25.81934 -25.10876 -24.42683 -23.48059 -22.99414 -22.45627 -21.78343 -20.18857 -19.08368 -18.71074 -18.05801 -17.49315 -17.45643 -16.95396 -16.70977 -16.51154 -16.30058 -16.03282 -15.55918 -15.53785 -15.12287 -14.93243 -14.81107 -14.58944 -14.53803 -14.21579 -13.91851 -13.70044 -13.62331 -13.32922 -13.14552 -13.02317 -12.98370 -12.84034 -12.72502 -12.50864 -12.28363 -12.10982 -12.03639 -11.94953 -11.60940 -11.46545 -11.09204 -11.00608 -10.83258 -10.76507 -10.49381 -10.47941 -10.10226 -10.00971 -8.95751 -7.91826 -5.18786 0.12395 0.18514 1.48145 1.49163 1.58283 1.59678 1.90374 2.57810 2.70506 3.08061 3.41860 3.56271 3.61359 3.74235 3.75402 3.77788 3.86690 3.93190 3.96238 4.08690 4.10733 4.19004 4.28601 4.34395 4.38252 4.41237 4.41635 4.61194 4.66019 4.68254 4.70227 4.72643 4.79853 4.83059 4.87294 4.97544 5.03374 5.11139 5.15276 5.19630 5.25531 5.33337 5.33796 5.50385 5.57946 5.58848 5.69015 5.74052 5.98608 6.31404 6.57154 6.98677 7.24378 7.37445 8.15264 8.37466 9.31813 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.001926 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.741628 B =14532.910206 C =15047.943694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.110 0.890 4 O -0.377 6.377 5 C 0.095 3.905 6 C -0.059 4.059 7 C -0.153 4.153 8 C 0.084 3.916 9 N -0.511 5.511 10 C 0.084 3.916 11 C -0.161 4.161 12 C 0.512 3.488 13 O -0.571 6.571 14 N -0.706 5.706 15 C 0.153 3.847 16 C -0.112 4.112 17 C -0.124 4.124 18 C 0.172 3.828 19 N -0.737 5.737 20 C -0.231 4.231 21 H 0.075 0.925 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.295 1.295 27 H -0.298 1.298 28 C -0.109 4.109 29 C -0.117 4.117 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.145 0.855 39 H 0.410 0.590 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.057 0.943 49 H 0.046 0.954 50 H 0.054 0.946 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -13.268 18.913 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.128 0.872 4 O -0.296 6.296 5 C 0.019 3.981 6 C -0.067 4.067 7 C -0.172 4.172 8 C -0.072 4.072 9 N -0.220 5.220 10 C -0.072 4.072 11 C -0.181 4.181 12 C 0.298 3.702 13 O -0.450 6.450 14 N -0.360 5.360 15 C 0.049 3.951 16 C -0.150 4.150 17 C -0.164 4.164 18 C 0.064 3.936 19 N -0.376 5.376 20 C -0.363 4.363 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.225 1.225 28 C -0.147 4.147 29 C -0.156 4.156 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.177 0.823 36 H 0.197 0.803 37 H 0.192 0.808 38 H 0.163 0.837 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.203 0.797 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.495 -14.701 19.486 25.020 hybrid contribution -0.239 2.067 -1.479 2.553 sum -5.734 -12.635 18.006 22.732 Atomic orbital electron populations 1.22228 0.91386 1.03579 1.05055 1.22050 0.96599 0.96699 0.83801 0.87237 1.88073 1.87007 1.35109 1.19435 1.21596 1.01758 0.91299 0.83435 1.20247 0.93987 0.97150 0.95340 1.22365 1.02098 0.97544 0.95231 1.23239 0.91881 0.95372 0.96717 1.67689 1.04399 1.20562 1.29394 1.23122 1.00622 0.93043 0.90447 1.22327 0.96447 0.99979 0.99310 1.20866 0.78962 0.85000 0.85354 1.90688 1.41779 1.25424 1.87113 1.46042 1.57107 1.27995 1.04860 1.20906 0.93186 0.96832 0.84216 1.21753 1.00262 0.95859 0.97166 1.22048 0.98382 0.95072 1.00947 1.20461 0.93840 0.83601 0.95687 1.42638 1.84047 1.02338 1.08598 1.19635 1.37233 0.90657 0.88779 0.90746 1.25474 1.04029 0.96790 1.00658 1.69802 1.57836 1.02757 1.31671 0.85167 0.76610 0.78231 0.80351 1.19115 1.22225 1.22538 1.21609 0.99228 0.95929 0.97983 1.21803 0.96684 0.95328 1.01827 0.89101 0.89354 0.92245 0.90816 0.89141 0.82317 0.80253 0.80847 0.83724 0.75234 0.89979 0.89684 0.89936 0.93336 0.92450 0.94359 0.79691 0.94227 0.92379 0.93510 0.92720 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 71.98 0.68 -1.42 16 2 C 0.07 1.25 3.13 29.85 0.09 1.35 16 3 H 0.11 1.50 7.79 -2.39 -0.02 1.48 16 4 O -0.38 -8.23 9.51 -129.99 -1.24 -9.47 16 5 C 0.09 1.42 5.92 71.23 0.42 1.84 16 6 C -0.06 -1.02 5.55 -19.67 -0.11 -1.13 16 7 C -0.15 -2.26 9.82 22.36 0.22 -2.05 16 8 C 0.08 1.35 11.18 84.68 0.95 2.30 16 9 N -0.51 -10.35 10.36 -195.84 -2.03 -12.38 16 10 C 0.08 1.51 11.18 84.68 0.95 2.45 16 11 C -0.16 -2.84 9.82 22.36 0.22 -2.62 16 12 C 0.51 12.72 7.14 87.66 0.63 13.34 16 13 O -0.57 -19.48 16.17 15.96 0.26 -19.23 16 14 N -0.71 -15.20 4.19 -442.54 -1.86 -17.06 16 15 C 0.15 3.54 2.78 44.99 0.13 3.67 16 16 C -0.11 -2.44 5.61 30.59 0.17 -2.26 16 17 C -0.12 -3.63 5.33 30.59 0.16 -3.47 16 18 C 0.17 6.15 2.77 44.99 0.12 6.27 16 19 N -0.74 -34.87 5.12 -322.94 -1.65 -36.52 16 20 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 21 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 22 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 23 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 24 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 C -0.11 -3.36 5.23 30.60 0.16 -3.20 16 29 C -0.12 -3.05 5.60 30.59 0.17 -2.87 16 30 H 0.09 0.78 7.87 -2.39 -0.02 0.77 16 31 H 0.09 0.90 7.92 -2.39 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.96 8.05 -2.38 -0.02 0.94 16 34 H 0.09 0.87 7.83 -2.39 -0.02 0.85 16 35 H 0.16 1.48 8.06 -2.92 -0.02 1.46 16 36 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.41 7.57 6.65 -92.71 -0.62 6.95 16 40 H 0.08 2.01 7.58 -2.39 -0.02 2.00 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.60 6.51 -2.39 -0.02 1.58 16 45 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 46 H 0.37 19.01 7.80 -92.70 -0.72 18.29 16 47 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 48 H 0.06 1.76 7.60 -2.39 -0.02 1.74 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 51 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -74.34 414.30 1.65 -72.69 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.41 Total: 35.31 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 6.26 Total: -3.07 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -5.26 Total: -123.29 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.98 Total: -28.69 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.34 1.65 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266913979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.864 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds