Wall clock time and date at job start Wed Apr 1 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 O 1.42895 * 109.47223 * 240.00279 * 2 1 3 5 5 C 1.42895 * 114.00339 * 89.99597 * 4 2 1 6 6 C 1.50703 * 109.47208 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78815 * 269.71998 * 6 5 4 8 8 C 1.38205 * 119.16012 * 179.80199 * 7 6 5 9 9 N 1.31874 * 120.76263 * 0.47989 * 8 7 6 10 10 C 1.31871 * 121.72576 * 359.75090 * 9 8 7 11 11 C 1.38196 * 120.76677 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47426 * 119.99680 * 2 1 3 13 13 O 1.21288 * 120.00017 * 114.99879 * 12 2 1 14 14 N 1.34777 * 120.00270 * 295.00416 * 12 2 1 15 15 C 1.46500 * 120.00270 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47473 * 154.99797 * 15 14 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 N 1.46506 * 109.47042 * 300.00642 * 18 17 16 20 20 C 1.36940 * 119.99462 * 204.99934 * 19 18 17 21 21 H 1.07992 * 120.00256 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99328 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99663 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00396 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47274 * 89.99732 * 24 22 20 26 26 H 1.48500 * 109.47246 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47214 * 330.00048 * 24 22 20 28 28 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 29 29 C 1.52999 * 109.46944 * 275.00142 * 15 14 12 30 30 H 1.08992 * 109.47672 * 60.00148 * 1 2 3 31 31 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47413 * 299.99716 * 1 2 3 33 33 H 1.08997 * 109.47529 * 300.00261 * 5 4 2 34 34 H 1.09000 * 109.46928 * 60.00107 * 5 4 2 35 35 H 1.07997 * 120.42007 * 0.02562 * 7 6 5 36 36 H 1.08000 * 119.61815 * 180.20687 * 8 7 6 37 37 H 1.07999 * 119.61441 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.42294 * 179.97438 * 11 10 9 39 39 H 0.97000 * 120.00239 * 359.97438 * 14 12 2 40 40 H 1.09002 * 109.47129 * 34.99540 * 15 14 12 41 41 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 42 42 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 43 43 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 44 44 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 45 45 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 46 46 H 0.97000 * 120.00279 * 24.99489 * 19 18 17 47 47 H 0.97000 * 120.00212 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.47153 * 60.00231 * 28 18 17 49 49 H 1.09001 * 109.47289 * 180.02562 * 28 18 17 50 50 H 1.09000 * 109.47486 * 59.99569 * 29 15 14 51 51 H 1.09002 * 109.46716 * 299.99651 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2940 6 6 2.7002 -0.6284 -3.4614 7 6 4.0590 -0.8075 -3.6708 8 6 4.4805 -1.5614 -4.7498 9 7 3.6074 -2.0988 -5.5793 10 6 2.3082 -1.9454 -5.4137 11 6 1.8126 -1.2085 -4.3548 12 6 2.0323 -0.7103 1.2304 13 8 2.6530 -1.7466 1.1215 14 7 1.7919 -0.1941 2.4520 15 6 2.2808 -0.8843 3.6482 16 6 2.4506 0.1246 4.7857 17 6 2.9618 -0.5962 6.0347 18 6 1.9550 -1.6702 6.4517 19 7 0.6640 -1.0422 6.7441 20 6 -0.2179 -1.6541 7.5944 21 1 0.0379 -2.5996 8.0490 22 6 -1.4409 -1.0587 7.8719 23 7 -2.2888 -1.6470 8.6887 24 14 -1.8831 0.5771 7.0861 25 1 -2.5749 0.3350 5.7945 26 1 -2.7807 1.3358 7.9938 27 1 -0.6452 1.3612 6.8450 28 6 1.7852 -2.6792 5.3142 29 6 1.2736 -1.9580 4.0648 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2537 0.6547 -2.5588 34 1 2.9318 0.9514 -2.0450 35 1 4.7790 -0.3665 -2.9973 36 1 5.5371 -1.7085 -4.9180 37 1 1.6235 -2.4010 -6.1136 38 1 0.7475 -1.0861 -4.2247 39 1 1.2958 0.6348 2.5392 40 1 3.2411 -1.3519 3.4308 41 1 1.4902 0.5922 5.0030 42 1 3.1682 0.8895 4.4888 43 1 3.9221 -1.0634 5.8171 44 1 3.0823 0.1226 6.8452 45 1 2.3188 -2.1835 7.3417 46 1 0.4341 -0.1930 6.3355 47 1 -3.1436 -1.2313 8.8824 48 1 2.7456 -3.1464 5.0965 49 1 1.0676 -3.4441 5.6110 50 1 1.1526 -2.6769 3.2544 51 1 0.3132 -1.4905 4.2821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266913981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:35 Heat of formation + Delta-G solvation = -41.019584 kcal Electronic energy + Delta-G solvation = -30343.178304 eV Core-core repulsion = 26242.552781 eV Total energy + Delta-G solvation = -4100.625523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.62876 -40.21163 -38.68964 -37.62582 -34.80774 -33.87871 -32.96472 -31.63263 -31.59338 -30.49459 -30.40267 -28.04576 -27.31995 -24.61148 -23.85530 -23.23105 -22.42643 -22.38278 -21.68196 -20.37495 -18.74917 -17.83062 -17.72068 -17.45605 -16.90384 -16.71201 -16.00034 -15.92114 -15.55540 -15.02350 -14.77529 -14.60427 -14.24149 -14.11397 -14.04475 -13.98783 -13.60221 -13.49805 -13.13404 -12.86048 -12.60947 -12.50958 -12.37498 -12.26297 -12.05035 -11.95300 -11.79979 -11.66060 -11.11848 -10.94530 -10.81431 -10.56752 -10.35603 -10.17393 -10.15533 -10.09569 -9.89147 -9.87483 -9.55477 -9.54158 -9.52241 -8.98364 -8.86942 -7.26436 -5.78019 -3.12451 0.72493 0.75912 2.52553 2.67987 3.30414 3.31809 3.36359 3.40031 3.69885 4.09025 4.23124 4.25126 4.45098 4.55273 4.55550 4.61578 4.66838 4.73084 4.85786 4.91158 4.91570 5.05766 5.21316 5.22578 5.25310 5.31802 5.38974 5.40300 5.50803 5.54579 5.60800 5.68964 5.76875 5.80941 5.89028 5.90417 5.95206 6.01031 6.17834 6.29082 6.35090 6.44079 6.46863 6.59317 6.68074 6.79190 6.86610 6.98476 7.45157 7.57997 8.00030 8.16966 8.41461 9.20415 9.92749 10.13210 11.40745 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.002027 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.320171 B =13811.888148 C =14416.702740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.151 4.151 12 C 0.513 3.487 13 O -0.518 6.518 14 N -0.722 5.722 15 C 0.149 3.851 16 C -0.124 4.124 17 C -0.121 4.121 18 C 0.177 3.823 19 N -0.745 5.745 20 C -0.238 4.238 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.881 3.119 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.278 1.278 28 C -0.131 4.131 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.397 0.603 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.359 0.641 47 H 0.258 0.742 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.054 0.946 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 8.303 -25.079 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.104 0.896 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.061 4.061 11 C -0.171 4.171 12 C 0.298 3.702 13 O -0.392 6.392 14 N -0.375 5.375 15 C 0.045 3.955 16 C -0.162 4.162 17 C -0.160 4.160 18 C 0.068 3.932 19 N -0.388 5.388 20 C -0.368 4.368 21 H 0.108 0.892 22 C -0.194 4.194 23 N -0.583 5.583 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.171 4.171 29 C -0.158 4.158 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.231 0.769 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.691 6.696 -25.698 29.016 hybrid contribution -1.250 2.366 0.293 2.692 sum 10.442 9.062 -25.406 28.924 Atomic orbital electron populations 1.22249 0.93219 1.04281 1.03252 1.21948 0.95330 0.96210 0.85585 0.89604 1.88140 1.86574 1.33458 1.18413 1.21418 1.00125 0.91642 0.84667 1.19957 0.93709 0.96840 0.94721 1.22111 0.95844 0.99892 0.99085 1.22795 0.99760 0.93007 0.90477 1.67677 1.03383 1.19539 1.28594 1.22788 0.91988 0.95282 0.96059 1.22092 1.01039 0.98203 0.95762 1.20243 0.80067 0.85732 0.84199 1.90736 1.39324 1.22796 1.86376 1.46097 1.57988 1.27746 1.05639 1.21105 0.98423 0.93217 0.82744 1.21757 1.01857 0.97585 0.94975 1.21774 0.98841 0.98980 0.96405 1.20227 0.85964 0.91803 0.95255 1.42821 1.16166 1.24104 1.55752 1.19105 0.95253 1.04259 1.18154 0.89200 1.24665 0.96816 0.98225 0.99647 1.69694 1.09453 1.39620 1.39529 0.86598 0.77800 0.85352 0.79059 1.21234 1.21829 1.20470 1.22089 0.99988 0.99349 0.95702 1.21768 0.99151 0.97242 0.97622 0.91242 0.90763 0.90576 0.91653 0.91745 0.84554 0.82483 0.82506 0.84558 0.76884 0.89705 0.91346 0.92045 0.91743 0.91329 0.92406 0.80727 0.93148 0.93247 0.91345 0.92698 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.48 37.15 0.35 -1.03 16 2 C 0.07 0.67 3.13 -27.89 -0.09 0.58 16 3 H 0.09 0.55 7.79 -51.93 -0.40 0.14 16 4 O -0.35 -3.91 9.51 -55.09 -0.52 -4.43 16 5 C 0.10 0.74 5.92 36.01 0.21 0.95 16 6 C -0.04 -0.38 5.55 -104.31 -0.58 -0.96 16 7 C -0.15 -1.24 9.82 -39.44 -0.39 -1.62 16 8 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 9 N -0.48 -4.82 10.36 -13.25 -0.14 -4.96 16 10 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 11 C -0.15 -1.19 9.82 -39.44 -0.39 -1.58 16 12 C 0.51 6.74 7.14 -10.99 -0.08 6.66 16 13 O -0.52 -9.20 16.17 -14.31 -0.23 -9.43 16 14 N -0.72 -8.45 5.04 -53.81 -0.27 -8.72 16 15 C 0.15 2.05 2.45 -67.93 -0.17 1.88 16 16 C -0.12 -1.61 5.22 -26.73 -0.14 -1.75 16 17 C -0.12 -1.74 5.61 -26.73 -0.15 -1.89 16 18 C 0.18 3.20 3.10 -67.93 -0.21 2.99 16 19 N -0.74 -16.49 4.08 -53.42 -0.22 -16.71 16 20 C -0.24 -6.46 10.41 -15.06 -0.16 -6.62 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 22 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 23 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 24 Si 0.88 21.31 27.73 -169.99 -4.71 16.60 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 28 C -0.13 -2.25 5.61 -26.70 -0.15 -2.40 16 29 C -0.12 -1.96 5.34 -26.70 -0.14 -2.11 16 30 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 33 H 0.07 0.36 7.83 -51.93 -0.41 -0.05 16 34 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.40 3.56 8.39 -40.82 -0.34 3.22 16 40 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 41 H 0.07 0.97 6.51 -51.93 -0.34 0.64 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 46 H 0.36 7.74 3.93 -40.82 -0.16 7.58 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 50 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.07 1.31 7.61 -51.93 -0.39 0.92 16 LS Contribution 411.19 15.07 6.20 6.20 Total: -1.00 -35.71 411.19 -10.02 -45.73 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.34 Total: 9.58 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.56 Total: -5.71 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.15 Total: -58.53 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.76 Total: -13.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.71 -10.02 -45.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266913981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.707 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds