Wall clock time and date at job start Wed Apr 1 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46907 * 2 1 4 4 O 1.42895 * 109.47223 * 240.00279 * 2 1 3 5 5 C 1.42895 * 114.00339 * 89.99597 * 4 2 1 6 6 C 1.50703 * 109.47208 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78815 * 269.71998 * 6 5 4 8 8 C 1.38205 * 119.16012 * 179.80199 * 7 6 5 9 9 N 1.31874 * 120.76263 * 0.47989 * 8 7 6 10 10 C 1.31871 * 121.72576 * 359.75090 * 9 8 7 11 11 C 1.38196 * 120.76677 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47426 * 119.99680 * 2 1 3 13 13 O 1.21288 * 120.00017 * 114.99879 * 12 2 1 14 14 N 1.34777 * 120.00270 * 295.00416 * 12 2 1 15 15 C 1.46500 * 120.00270 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47473 * 154.99797 * 15 14 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 N 1.46506 * 109.47042 * 300.00642 * 18 17 16 20 20 C 1.36940 * 119.99462 * 204.99934 * 19 18 17 21 21 H 1.07992 * 120.00256 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99328 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99663 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00396 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47274 * 89.99732 * 24 22 20 26 26 H 1.48500 * 109.47246 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47214 * 330.00048 * 24 22 20 28 28 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 29 29 C 1.52999 * 109.46944 * 275.00142 * 15 14 12 30 30 H 1.08992 * 109.47672 * 60.00148 * 1 2 3 31 31 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47413 * 299.99716 * 1 2 3 33 33 H 1.08997 * 109.47529 * 300.00261 * 5 4 2 34 34 H 1.09000 * 109.46928 * 60.00107 * 5 4 2 35 35 H 1.07997 * 120.42007 * 0.02562 * 7 6 5 36 36 H 1.08000 * 119.61815 * 180.20687 * 8 7 6 37 37 H 1.07999 * 119.61441 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.42294 * 179.97438 * 11 10 9 39 39 H 0.97000 * 120.00239 * 359.97438 * 14 12 2 40 40 H 1.09002 * 109.47129 * 34.99540 * 15 14 12 41 41 H 1.09002 * 109.47153 * 59.99757 * 16 15 14 42 42 H 1.09001 * 109.46832 * 299.99948 * 16 15 14 43 43 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 44 44 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 45 45 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 46 46 H 0.97000 * 120.00279 * 24.99489 * 19 18 17 47 47 H 0.97000 * 120.00212 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.47153 * 60.00231 * 28 18 17 49 49 H 1.09001 * 109.47289 * 180.02562 * 28 18 17 50 50 H 1.09000 * 109.47486 * 59.99569 * 29 15 14 51 51 H 1.09002 * 109.46716 * 299.99651 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2940 6 6 2.7002 -0.6284 -3.4614 7 6 4.0590 -0.8075 -3.6708 8 6 4.4805 -1.5614 -4.7498 9 7 3.6074 -2.0988 -5.5793 10 6 2.3082 -1.9454 -5.4137 11 6 1.8126 -1.2085 -4.3548 12 6 2.0323 -0.7103 1.2304 13 8 2.6530 -1.7466 1.1215 14 7 1.7919 -0.1941 2.4520 15 6 2.2808 -0.8843 3.6482 16 6 2.4506 0.1246 4.7857 17 6 2.9618 -0.5962 6.0347 18 6 1.9550 -1.6702 6.4517 19 7 0.6640 -1.0422 6.7441 20 6 -0.2179 -1.6541 7.5944 21 1 0.0379 -2.5996 8.0490 22 6 -1.4409 -1.0587 7.8719 23 7 -2.2888 -1.6470 8.6887 24 14 -1.8831 0.5771 7.0861 25 1 -2.5749 0.3350 5.7945 26 1 -2.7807 1.3358 7.9938 27 1 -0.6452 1.3612 6.8450 28 6 1.7852 -2.6792 5.3142 29 6 1.2736 -1.9580 4.0648 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2537 0.6547 -2.5588 34 1 2.9318 0.9514 -2.0450 35 1 4.7790 -0.3665 -2.9973 36 1 5.5371 -1.7085 -4.9180 37 1 1.6235 -2.4010 -6.1136 38 1 0.7475 -1.0861 -4.2247 39 1 1.2958 0.6348 2.5392 40 1 3.2411 -1.3519 3.4308 41 1 1.4902 0.5922 5.0030 42 1 3.1682 0.8895 4.4888 43 1 3.9221 -1.0634 5.8171 44 1 3.0823 0.1226 6.8452 45 1 2.3188 -2.1835 7.3417 46 1 0.4341 -0.1930 6.3355 47 1 -3.1436 -1.2313 8.8824 48 1 2.7456 -3.1464 5.0965 49 1 1.0676 -3.4441 5.6110 50 1 1.1526 -2.6769 3.2544 51 1 0.3132 -1.4905 4.2821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266913981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:34 Heat of formation + Delta-G solvation = -64.998021 kcal Electronic energy + Delta-G solvation = -30344.218087 eV Core-core repulsion = 26242.552781 eV Total energy + Delta-G solvation = -4101.665306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38118 -41.05717 -39.79106 -38.57999 -36.20604 -34.74462 -34.36777 -32.87467 -32.16587 -31.85685 -31.68202 -29.41879 -27.88981 -25.61776 -25.01052 -24.43346 -23.63338 -23.03805 -22.84054 -21.37480 -20.12480 -19.79531 -18.56030 -18.24138 -17.53030 -17.42856 -16.91503 -16.58013 -16.52699 -16.36215 -16.22546 -15.72946 -15.43964 -15.20404 -15.10249 -14.80240 -14.57074 -14.43436 -14.23953 -14.10643 -13.76423 -13.67983 -13.39356 -13.32735 -13.07939 -12.98036 -12.90211 -12.58466 -12.51543 -12.33088 -12.26737 -12.06510 -11.83314 -11.69535 -11.32260 -11.24891 -11.05976 -10.87316 -10.77035 -10.48663 -10.46515 -10.10824 -10.04950 -9.24535 -7.97565 -5.29571 0.12138 0.17999 1.36076 1.42468 1.50020 1.56321 1.86752 2.52005 2.68621 3.07705 3.33398 3.55170 3.58834 3.66990 3.73774 3.75650 3.85015 3.88904 3.93524 4.06221 4.10201 4.10867 4.18787 4.32624 4.37735 4.39284 4.42234 4.60591 4.63786 4.64098 4.65753 4.68599 4.75632 4.80080 4.86699 4.97035 4.97103 5.12852 5.17798 5.21640 5.26338 5.28456 5.32572 5.44693 5.53223 5.58794 5.73700 5.83898 5.99816 6.26540 6.56868 6.98411 7.13998 7.24039 7.90582 8.11463 9.24551 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.002027 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.320171 B =13811.888148 C =14416.702740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.126 0.874 4 O -0.382 6.382 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.158 4.158 8 C 0.083 3.917 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.156 4.156 12 C 0.508 3.492 13 O -0.572 6.572 14 N -0.710 5.710 15 C 0.157 3.843 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.169 3.831 19 N -0.742 5.742 20 C -0.222 4.222 21 H 0.050 0.950 22 C -0.073 4.073 23 N -0.989 5.989 24 Si 0.953 3.047 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.242 1.242 28 C -0.126 4.126 29 C -0.112 4.112 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.177 0.823 38 H 0.156 0.844 39 H 0.415 0.585 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.367 0.633 47 H 0.255 0.745 48 H 0.070 0.930 49 H 0.033 0.967 50 H 0.038 0.962 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.059 11.898 -27.020 31.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.144 0.856 4 O -0.301 6.301 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.178 4.178 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.175 4.175 12 C 0.295 3.705 13 O -0.451 6.451 14 N -0.363 5.363 15 C 0.053 3.947 16 C -0.154 4.154 17 C -0.153 4.153 18 C 0.061 3.939 19 N -0.386 5.386 20 C -0.353 4.353 21 H 0.068 0.932 22 C -0.263 4.263 23 N -0.640 5.640 24 Si 0.780 3.220 25 H -0.205 1.205 26 H -0.228 1.228 27 H -0.166 1.166 28 C -0.166 4.166 29 C -0.151 4.151 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.168 0.832 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.174 0.826 39 H 0.251 0.749 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.201 0.799 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.791 10.334 -27.671 32.188 hybrid contribution -1.517 1.084 0.905 2.072 sum 11.274 11.418 -26.766 31.207 Atomic orbital electron populations 1.22261 0.92120 1.03121 1.05190 1.22020 0.95913 0.97173 0.83404 0.85606 1.88099 1.86916 1.35444 1.19595 1.21618 1.01903 0.91272 0.83185 1.20286 0.94004 0.97194 0.95359 1.22348 0.96376 0.99853 0.99193 1.23164 1.00616 0.93028 0.90560 1.67688 1.04328 1.20559 1.29597 1.23200 0.91933 0.95475 0.96782 1.22360 1.02086 0.97689 0.95380 1.21038 0.78913 0.85111 0.85470 1.90712 1.41884 1.25286 1.87189 1.45944 1.57590 1.28003 1.04748 1.20864 0.97014 0.92879 0.83987 1.21721 1.02462 0.97670 0.93579 1.21708 0.98400 0.97852 0.97309 1.20449 0.85263 0.93248 0.94929 1.42747 1.16794 1.24246 1.54843 1.19031 0.95977 1.02769 1.17549 0.93163 1.25548 0.96861 1.02941 1.00975 1.69907 1.10040 1.41968 1.42134 0.85427 0.78572 0.80243 0.77714 1.20459 1.22831 1.16615 1.21984 1.00159 0.98548 0.95954 1.21659 0.99197 0.97743 0.96465 0.88652 0.93457 0.89309 0.89257 0.89911 0.83179 0.80745 0.80584 0.82627 0.74851 0.90296 0.91962 0.88522 0.89285 0.90720 0.93909 0.79870 0.93643 0.91164 0.94769 0.94273 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.48 71.98 0.68 -1.50 16 2 C 0.08 1.19 3.13 29.84 0.09 1.28 16 3 H 0.13 0.96 7.79 -2.39 -0.02 0.95 16 4 O -0.38 -7.72 9.51 -129.99 -1.24 -8.96 16 5 C 0.10 1.16 5.92 71.24 0.42 1.58 16 6 C -0.06 -0.93 5.55 -19.66 -0.11 -1.04 16 7 C -0.16 -2.43 9.82 22.36 0.22 -2.21 16 8 C 0.08 1.37 11.18 84.68 0.95 2.31 16 9 N -0.51 -10.06 10.36 -195.85 -2.03 -12.09 16 10 C 0.08 1.31 11.18 84.68 0.95 2.26 16 11 C -0.16 -2.24 9.82 22.36 0.22 -2.02 16 12 C 0.51 12.27 7.14 87.66 0.63 12.90 16 13 O -0.57 -20.02 16.17 15.93 0.26 -19.76 16 14 N -0.71 -14.44 5.04 -442.53 -2.23 -16.67 16 15 C 0.16 3.93 2.45 44.99 0.11 4.04 16 16 C -0.12 -2.55 5.22 30.59 0.16 -2.39 16 17 C -0.11 -2.90 5.61 30.60 0.17 -2.73 16 18 C 0.17 5.99 3.10 44.99 0.14 6.13 16 19 N -0.74 -32.31 4.08 -322.94 -1.32 -33.63 16 20 C -0.22 -12.36 10.41 84.03 0.87 -11.49 16 21 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 22 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 23 N -0.99 -63.35 13.97 21.65 0.30 -63.05 16 24 Si 0.95 43.53 27.73 68.60 1.90 45.43 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.24 -9.49 6.52 99.48 0.65 -8.84 16 28 C -0.13 -4.36 5.61 30.61 0.17 -4.19 16 29 C -0.11 -3.62 5.34 30.61 0.16 -3.46 16 30 H 0.09 0.74 7.87 -2.39 -0.02 0.73 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.91 7.93 -2.38 -0.02 0.89 16 33 H 0.09 0.62 7.83 -2.39 -0.02 0.60 16 34 H 0.08 0.67 8.04 -2.39 -0.02 0.65 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.41 5.64 8.39 -92.71 -0.78 4.87 16 40 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 41 H 0.06 1.48 6.51 -2.39 -0.02 1.47 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 46 H 0.37 14.89 3.93 -92.71 -0.36 14.52 16 47 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.05 1.92 7.61 -2.39 -0.02 1.90 16 Total: -1.00 -82.52 411.19 1.69 -80.84 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.27 Total: 32.15 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 6.31 Total: -4.26 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.27 Total: -125.43 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.98 Total: -28.72 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.90 Total: 45.43 kcal Total: -82.52 1.69 -80.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266913981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.837 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds