Wall clock time and date at job start Wed Apr 1 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47053 * 2 1 4 4 C 1.47012 * 110.99671 * 72.26141 * 3 2 1 5 5 C 1.53098 * 109.26031 * 182.38856 * 4 3 2 6 6 O 1.43015 * 109.25942 * 303.15440 * 5 4 3 7 7 C 1.43112 * 113.76424 * 58.66721 * 6 5 4 8 8 C 1.47016 * 111.00084 * 195.89351 * 3 2 1 9 9 H 1.09008 * 109.50550 * 297.54739 * 8 3 2 10 10 C 1.50699 * 109.50569 * 57.63226 * 8 3 2 11 11 O 1.21278 * 119.99811 * 27.79074 * 10 8 3 12 12 N 1.34778 * 119.99983 * 207.79246 * 10 8 3 13 13 C 1.46496 * 120.00106 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47272 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.46724 * 294.99359 * 14 13 12 16 16 N 1.46497 * 109.47014 * 54.99444 * 14 13 12 17 17 C 1.36941 * 119.99946 * 58.16961 * 16 14 13 18 18 H 1.07999 * 119.99756 * 353.94803 * 17 16 14 19 19 C 1.38809 * 119.99873 * 173.95351 * 17 16 14 20 20 N 1.31623 * 119.99924 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00108 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47162 * 90.00051 * 21 19 17 23 23 H 1.48497 * 109.47135 * 209.99897 * 21 19 17 24 24 H 1.48503 * 109.47253 * 329.99673 * 21 19 17 25 25 C 1.50700 * 109.46935 * 174.99785 * 14 13 12 26 26 C 1.38233 * 119.99488 * 205.43393 * 25 14 13 27 27 C 1.38243 * 119.99664 * 179.74710 * 26 25 14 28 28 C 1.38232 * 119.99612 * 0.52618 * 27 26 25 29 29 C 1.38231 * 120.00330 * 359.75034 * 28 27 26 30 30 C 1.38234 * 120.00215 * 359.97438 * 29 28 27 31 31 H 1.08990 * 109.46937 * 299.99619 * 1 2 3 32 32 H 1.08996 * 109.46989 * 60.00064 * 1 2 3 33 33 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47302 * 240.00276 * 2 1 3 35 35 H 1.08996 * 109.47566 * 120.00432 * 2 1 3 36 36 H 1.08996 * 109.50781 * 302.32502 * 4 3 2 37 37 H 1.09010 * 109.50805 * 62.41288 * 4 3 2 38 38 H 1.09004 * 109.49955 * 63.08663 * 5 4 3 39 39 H 1.08997 * 109.51142 * 183.16881 * 5 4 3 40 40 H 1.08997 * 109.56458 * 181.41865 * 7 6 5 41 41 H 1.09002 * 109.49694 * 61.25398 * 7 6 5 42 42 H 0.97001 * 119.99826 * 359.97438 * 12 10 8 43 43 H 1.08998 * 109.46909 * 299.99351 * 13 12 10 44 44 H 1.09002 * 109.47282 * 59.99786 * 13 12 10 45 45 H 0.97001 * 120.00284 * 238.16229 * 16 14 13 46 46 H 0.96999 * 119.99968 * 180.02562 * 20 19 17 47 47 H 1.08003 * 120.00424 * 0.02562 * 26 25 14 48 48 H 1.07999 * 119.99824 * 180.29733 * 27 26 25 49 49 H 1.08009 * 119.99608 * 179.76825 * 28 27 26 50 50 H 1.08003 * 119.99930 * 179.97438 * 29 28 27 51 51 H 1.07990 * 120.00413 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8010 2.0210 1.3072 5 6 2.2698 3.4771 1.2451 6 8 3.6432 3.5140 0.8480 7 6 3.8929 2.9034 -0.4220 8 6 3.4398 1.4417 -0.3759 9 1 4.0332 0.8998 0.3606 10 6 3.6266 0.8140 -1.7331 11 8 2.7169 0.8217 -2.5351 12 7 4.8045 0.2439 -2.0555 13 6 4.9863 -0.3659 -3.3751 14 6 6.4023 -0.9355 -3.4830 15 1 7.1257 -0.1213 -3.4396 16 7 6.6420 -1.8615 -2.3735 17 6 5.8273 -2.9486 -2.2007 18 1 4.9514 -3.0709 -2.8206 19 6 6.1271 -3.8931 -1.2287 20 7 5.3437 -4.9376 -1.0622 21 14 7.6423 -3.6817 -0.1568 22 1 7.2846 -2.9078 1.0590 23 1 8.1580 -5.0165 0.2400 24 1 8.6890 -2.9529 -0.9174 25 6 6.5501 -1.6695 -4.7909 26 6 7.4841 -2.6810 -4.9140 27 6 7.6161 -3.3579 -6.1121 28 6 6.8216 -3.0158 -7.1903 29 6 5.8915 -2.0004 -7.0689 30 6 5.7555 -1.3274 -5.8691 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.7397 1.9905 1.5539 37 1 2.3676 1.4879 2.0708 38 1 1.6664 4.0230 0.5198 39 1 2.1618 3.9366 2.2276 40 1 4.9590 2.9472 -0.6447 41 1 3.3367 3.4326 -1.1957 42 1 5.5322 0.2380 -1.4141 43 1 4.2606 -1.1682 -3.5076 44 1 4.8388 0.3888 -4.1476 45 1 7.3779 -1.7048 -1.7612 46 1 5.5530 -5.5975 -0.3827 47 1 8.1077 -2.9456 -4.0727 48 1 8.3425 -4.1514 -6.2068 49 1 6.9273 -3.5421 -8.1275 50 1 5.2710 -1.7328 -7.9114 51 1 5.0287 -0.5344 -5.7741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267521523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:03 Heat of formation + Delta-G solvation = -22.268284 kcal Electronic energy + Delta-G solvation = -31809.774558 eV Core-core repulsion = 27709.962152 eV Total energy + Delta-G solvation = -4099.812405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.41976 -39.15045 -38.35599 -36.26217 -35.78256 -33.55766 -32.18878 -31.54711 -30.88908 -30.55397 -29.92887 -27.63888 -26.59977 -24.99923 -24.01275 -22.39048 -22.04639 -21.80662 -20.90591 -19.95263 -19.55298 -18.10451 -17.32450 -16.67455 -16.51339 -16.22188 -15.64995 -15.18604 -14.99363 -14.91667 -14.66468 -14.47316 -14.27149 -14.19940 -13.97063 -13.84406 -13.34527 -12.95006 -12.89666 -12.79753 -12.59259 -12.34946 -12.19064 -12.04983 -11.92169 -11.67712 -11.55936 -11.47870 -11.07163 -10.93581 -10.83811 -10.67755 -10.60246 -10.46754 -10.20649 -9.96615 -9.66608 -9.36585 -9.11406 -8.57376 -8.40967 -8.38177 -8.17084 -7.47155 -5.86392 -3.26919 1.86615 1.95083 2.86281 3.25088 3.26706 3.31106 3.36314 3.60266 3.92935 4.29814 4.46612 4.70322 4.84614 4.84803 4.96733 5.08084 5.10137 5.13239 5.29349 5.32244 5.35556 5.42115 5.42312 5.45054 5.48911 5.53036 5.57194 5.59389 5.66458 5.69200 5.78747 5.83524 5.93672 5.96510 6.13336 6.13847 6.18964 6.31570 6.48434 6.55331 6.58226 6.80902 6.83658 6.91396 6.95411 6.97467 7.02973 7.23078 7.53180 7.86631 7.91757 8.30295 8.58496 9.06025 9.76737 9.93264 11.31124 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.003546 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.788376 B = 7895.273896 C = 9093.143106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.046 3.954 3 N -0.513 5.513 4 C 0.016 3.984 5 C 0.062 3.938 6 O -0.381 6.381 7 C 0.079 3.921 8 C 0.031 3.969 9 H 0.069 0.931 10 C 0.518 3.482 11 O -0.527 6.527 12 N -0.703 5.703 13 C 0.117 3.883 14 C 0.203 3.797 15 H 0.075 0.925 16 N -0.740 5.740 17 C -0.239 4.239 18 H 0.091 0.909 19 C 0.012 3.988 20 N -0.927 5.927 21 Si 0.877 3.123 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.275 1.275 25 C -0.076 4.076 26 C -0.074 4.074 27 C -0.128 4.128 28 C -0.132 4.132 29 C -0.130 4.130 30 C -0.124 4.124 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.400 0.600 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.364 0.636 46 H 0.259 0.741 47 H 0.124 0.876 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 14.248 -0.625 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 N -0.239 5.239 4 C -0.112 4.112 5 C -0.015 4.015 6 O -0.299 6.299 7 C 0.001 3.999 8 C -0.082 4.082 9 H 0.087 0.913 10 C 0.302 3.698 11 O -0.403 6.403 12 N -0.354 5.354 13 C -0.009 4.009 14 C 0.093 3.907 15 H 0.093 0.907 16 N -0.381 5.381 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.573 5.573 21 Si 0.707 3.293 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.201 1.201 25 C -0.079 4.079 26 C -0.092 4.092 27 C -0.146 4.146 28 C -0.150 4.150 29 C -0.148 4.148 30 C -0.143 4.143 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.234 0.766 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.196 0.804 46 H 0.070 0.930 47 H 0.142 0.858 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.131 0.869 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.400 14.380 -1.450 14.651 hybrid contribution 1.577 -1.023 1.675 2.517 sum -0.823 13.357 0.225 13.384 Atomic orbital electron populations 1.21686 0.94527 1.01563 1.01939 1.22198 0.96570 0.87476 1.01853 1.62038 1.14762 1.19045 1.28063 1.22875 1.02351 0.95807 0.90170 1.22703 0.82725 0.95212 1.00845 1.88009 1.26276 1.78910 1.36723 1.22544 1.01492 0.89536 0.86281 1.22296 0.91274 0.98582 0.96011 0.91305 1.19962 0.82688 0.78905 0.88265 1.90687 1.40628 1.58266 1.50753 1.45757 1.14618 1.57227 1.17828 1.21835 0.99345 0.96847 0.82878 1.19307 0.94067 0.91345 0.86019 0.90733 1.42771 1.36161 1.28927 1.30234 1.18897 1.04515 0.97346 1.16058 0.89124 1.24677 0.97920 0.96443 0.99415 1.69698 1.38878 1.12635 1.36120 0.86701 0.84232 0.77227 0.81165 1.21256 1.21838 1.20144 1.20490 0.95274 0.97085 0.95056 1.20956 0.97627 0.94184 0.96480 1.21098 1.00029 0.99891 0.93613 1.20993 0.97276 0.98269 0.98463 1.20979 0.99005 0.97235 0.97572 1.21098 0.99483 1.00584 0.93092 0.93274 0.91683 0.92191 0.89491 0.94707 0.89094 0.93815 0.92054 0.88368 0.87949 0.91459 0.76586 0.90759 0.92267 0.80352 0.93037 0.85796 0.86889 0.87100 0.86947 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.97 37.16 0.37 -1.41 16 2 C 0.05 0.70 5.35 -3.82 -0.02 0.68 16 3 N -0.51 -7.19 4.23 -227.72 -0.96 -8.15 16 4 C 0.02 0.18 5.46 -3.71 -0.02 0.16 16 5 C 0.06 0.63 7.01 37.21 0.26 0.89 16 6 O -0.38 -4.65 10.83 -35.23 -0.38 -5.03 16 7 C 0.08 0.95 6.28 37.21 0.23 1.19 16 8 C 0.03 0.43 2.37 -68.75 -0.16 0.27 16 9 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 10 C 0.52 8.54 5.74 -10.99 -0.06 8.47 16 11 O -0.53 -10.40 15.57 5.56 0.09 -10.31 16 12 N -0.70 -11.07 5.39 -60.29 -0.32 -11.40 16 13 C 0.12 1.95 3.89 -4.04 -0.02 1.94 16 14 C 0.20 3.38 3.25 -69.08 -0.22 3.15 16 15 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 16 N -0.74 -14.71 3.67 -54.55 -0.20 -14.91 16 17 C -0.24 -5.97 9.01 -15.06 -0.14 -6.11 16 18 H 0.09 2.60 7.26 -52.49 -0.38 2.22 16 19 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 20 N -0.93 -27.73 13.97 55.49 0.78 -26.95 16 21 Si 0.88 20.31 27.68 -169.99 -4.70 15.61 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -5.88 6.61 56.52 0.37 -5.50 16 25 C -0.08 -1.32 5.14 -104.62 -0.54 -1.86 16 26 C -0.07 -1.33 8.94 -39.58 -0.35 -1.69 16 27 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 28 C -0.13 -1.97 10.05 -39.59 -0.40 -2.36 16 29 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 30 C -0.12 -1.97 9.14 -39.58 -0.36 -2.33 16 31 H 0.05 0.53 6.74 -51.93 -0.35 0.18 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.59 5.95 -51.93 -0.31 1.28 16 35 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.09 0.87 6.64 -51.93 -0.34 0.53 16 37 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.40 5.77 8.14 -40.82 -0.33 5.44 16 43 H 0.07 1.53 7.25 -51.93 -0.38 1.15 16 44 H 0.06 0.91 6.88 -51.93 -0.36 0.55 16 45 H 0.36 7.03 5.97 -40.82 -0.24 6.79 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.12 2.36 7.54 -52.48 -0.40 1.96 16 48 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 49 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 50 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 51 H 0.12 1.71 6.19 -52.49 -0.33 1.39 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -31.65 401.74 -10.05 -41.70 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -8.07 Total: 17.00 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.32 Total: -3.60 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.71 Total: -61.41 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.29 Total: -15.34 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.70 Total: 15.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.65 -10.05 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267521523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.432 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds