Wall clock time and date at job start Wed Apr 1 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47053 * 2 1 4 4 C 1.47012 * 110.99671 * 72.26141 * 3 2 1 5 5 C 1.53098 * 109.26031 * 182.38856 * 4 3 2 6 6 O 1.43015 * 109.25942 * 303.15440 * 5 4 3 7 7 C 1.43112 * 113.76424 * 58.66721 * 6 5 4 8 8 C 1.47016 * 111.00084 * 195.89351 * 3 2 1 9 9 H 1.09008 * 109.50550 * 297.54739 * 8 3 2 10 10 C 1.50699 * 109.50569 * 57.63226 * 8 3 2 11 11 O 1.21278 * 119.99811 * 27.79074 * 10 8 3 12 12 N 1.34778 * 119.99983 * 207.79246 * 10 8 3 13 13 C 1.46496 * 120.00106 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47272 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.46724 * 294.99359 * 14 13 12 16 16 N 1.46497 * 109.47014 * 54.99444 * 14 13 12 17 17 C 1.36941 * 119.99946 * 58.16961 * 16 14 13 18 18 H 1.07999 * 119.99756 * 353.94803 * 17 16 14 19 19 C 1.38809 * 119.99873 * 173.95351 * 17 16 14 20 20 N 1.31623 * 119.99924 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00108 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47162 * 90.00051 * 21 19 17 23 23 H 1.48497 * 109.47135 * 209.99897 * 21 19 17 24 24 H 1.48503 * 109.47253 * 329.99673 * 21 19 17 25 25 C 1.50700 * 109.46935 * 174.99785 * 14 13 12 26 26 C 1.38233 * 119.99488 * 205.43393 * 25 14 13 27 27 C 1.38243 * 119.99664 * 179.74710 * 26 25 14 28 28 C 1.38232 * 119.99612 * 0.52618 * 27 26 25 29 29 C 1.38231 * 120.00330 * 359.75034 * 28 27 26 30 30 C 1.38234 * 120.00215 * 359.97438 * 29 28 27 31 31 H 1.08990 * 109.46937 * 299.99619 * 1 2 3 32 32 H 1.08996 * 109.46989 * 60.00064 * 1 2 3 33 33 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47302 * 240.00276 * 2 1 3 35 35 H 1.08996 * 109.47566 * 120.00432 * 2 1 3 36 36 H 1.08996 * 109.50781 * 302.32502 * 4 3 2 37 37 H 1.09010 * 109.50805 * 62.41288 * 4 3 2 38 38 H 1.09004 * 109.49955 * 63.08663 * 5 4 3 39 39 H 1.08997 * 109.51142 * 183.16881 * 5 4 3 40 40 H 1.08997 * 109.56458 * 181.41865 * 7 6 5 41 41 H 1.09002 * 109.49694 * 61.25398 * 7 6 5 42 42 H 0.97001 * 119.99826 * 359.97438 * 12 10 8 43 43 H 1.08998 * 109.46909 * 299.99351 * 13 12 10 44 44 H 1.09002 * 109.47282 * 59.99786 * 13 12 10 45 45 H 0.97001 * 120.00284 * 238.16229 * 16 14 13 46 46 H 0.96999 * 119.99968 * 180.02562 * 20 19 17 47 47 H 1.08003 * 120.00424 * 0.02562 * 26 25 14 48 48 H 1.07999 * 119.99824 * 180.29733 * 27 26 25 49 49 H 1.08009 * 119.99608 * 179.76825 * 28 27 26 50 50 H 1.08003 * 119.99930 * 179.97438 * 29 28 27 51 51 H 1.07990 * 120.00413 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8010 2.0210 1.3072 5 6 2.2698 3.4771 1.2451 6 8 3.6432 3.5140 0.8480 7 6 3.8929 2.9034 -0.4220 8 6 3.4398 1.4417 -0.3759 9 1 4.0332 0.8998 0.3606 10 6 3.6266 0.8140 -1.7331 11 8 2.7169 0.8217 -2.5351 12 7 4.8045 0.2439 -2.0555 13 6 4.9863 -0.3659 -3.3751 14 6 6.4023 -0.9355 -3.4830 15 1 7.1257 -0.1213 -3.4396 16 7 6.6420 -1.8615 -2.3735 17 6 5.8273 -2.9486 -2.2007 18 1 4.9514 -3.0709 -2.8206 19 6 6.1271 -3.8931 -1.2287 20 7 5.3437 -4.9376 -1.0622 21 14 7.6423 -3.6817 -0.1568 22 1 7.2846 -2.9078 1.0590 23 1 8.1580 -5.0165 0.2400 24 1 8.6890 -2.9529 -0.9174 25 6 6.5501 -1.6695 -4.7909 26 6 7.4841 -2.6810 -4.9140 27 6 7.6161 -3.3579 -6.1121 28 6 6.8216 -3.0158 -7.1903 29 6 5.8915 -2.0004 -7.0689 30 6 5.7555 -1.3274 -5.8691 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.7397 1.9905 1.5539 37 1 2.3676 1.4879 2.0708 38 1 1.6664 4.0230 0.5198 39 1 2.1618 3.9366 2.2276 40 1 4.9590 2.9472 -0.6447 41 1 3.3367 3.4326 -1.1957 42 1 5.5322 0.2380 -1.4141 43 1 4.2606 -1.1682 -3.5076 44 1 4.8388 0.3888 -4.1476 45 1 7.3779 -1.7048 -1.7612 46 1 5.5530 -5.5975 -0.3827 47 1 8.1077 -2.9456 -4.0727 48 1 8.3425 -4.1514 -6.2068 49 1 6.9273 -3.5421 -8.1275 50 1 5.2710 -1.7328 -7.9114 51 1 5.0287 -0.5344 -5.7741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267521523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:02 Heat of formation + Delta-G solvation = -45.235537 kcal Electronic energy + Delta-G solvation = -31810.770493 eV Core-core repulsion = 27709.962152 eV Total energy + Delta-G solvation = -4100.808340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59297 -40.42851 -39.55188 -37.58684 -37.00188 -35.15276 -33.82846 -32.75263 -31.97502 -31.87507 -31.39352 -28.99595 -27.64726 -26.35643 -25.43999 -23.81215 -23.16586 -23.05741 -22.05087 -21.34547 -20.83892 -19.99373 -18.54109 -17.92163 -17.57098 -17.37081 -16.79055 -16.63300 -16.41267 -16.06709 -16.02255 -15.71896 -15.64697 -15.45805 -15.20206 -15.05651 -14.76268 -14.48043 -14.15690 -14.10616 -13.91685 -13.70524 -13.48917 -13.25852 -13.18325 -12.93144 -12.87883 -12.76913 -12.44745 -12.40356 -12.20620 -11.94014 -11.83953 -11.79475 -11.60497 -11.58391 -11.05641 -10.97719 -10.59848 -9.97689 -9.66026 -9.57777 -9.50201 -9.25674 -7.96187 -5.33325 0.59996 0.67248 1.38532 1.41842 1.49461 1.55203 2.09546 2.50702 2.60908 2.92442 3.01076 3.33664 3.57138 3.69316 3.71942 3.89575 3.92736 3.99625 4.02479 4.15189 4.21161 4.24990 4.30313 4.32296 4.37503 4.38881 4.45859 4.48229 4.57692 4.63496 4.66944 4.72546 4.81940 4.89783 4.90809 4.92526 5.00289 5.08918 5.24182 5.24439 5.30269 5.48978 5.70764 5.72712 5.74825 5.80102 5.89302 5.93812 6.03054 6.25014 6.27804 6.61135 7.11286 7.26885 7.80216 8.02650 9.25412 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.003546 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.788376 B = 7895.273896 C = 9093.143106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.049 3.951 3 N -0.523 5.523 4 C 0.015 3.985 5 C 0.060 3.940 6 O -0.389 6.389 7 C 0.086 3.914 8 C 0.034 3.966 9 H 0.067 0.933 10 C 0.517 3.483 11 O -0.564 6.564 12 N -0.699 5.699 13 C 0.128 3.872 14 C 0.205 3.795 15 H 0.113 0.887 16 N -0.735 5.735 17 C -0.196 4.196 18 H 0.045 0.955 19 C -0.061 4.061 20 N -0.986 5.986 21 Si 0.946 3.054 22 H -0.281 1.281 23 H -0.310 1.310 24 H -0.242 1.242 25 C -0.094 4.094 26 C -0.100 4.100 27 C -0.139 4.139 28 C -0.132 4.132 29 C -0.131 4.131 30 C -0.133 4.133 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.031 0.969 36 H 0.109 0.891 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.063 0.937 42 H 0.408 0.592 43 H 0.028 0.972 44 H 0.078 0.922 45 H 0.372 0.628 46 H 0.253 0.747 47 H 0.108 0.892 48 H 0.128 0.872 49 H 0.141 0.859 50 H 0.141 0.859 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 16.819 -0.534 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 N -0.249 5.249 4 C -0.112 4.112 5 C -0.016 4.016 6 O -0.307 6.307 7 C 0.008 3.992 8 C -0.079 4.079 9 H 0.085 0.915 10 C 0.303 3.697 11 O -0.442 6.442 12 N -0.350 5.350 13 C 0.003 3.997 14 C 0.096 3.904 15 H 0.131 0.869 16 N -0.377 5.377 17 C -0.327 4.327 18 H 0.063 0.937 19 C -0.252 4.252 20 N -0.637 5.637 21 Si 0.775 3.225 22 H -0.207 1.207 23 H -0.238 1.238 24 H -0.166 1.166 25 C -0.097 4.097 26 C -0.119 4.119 27 C -0.157 4.157 28 C -0.150 4.150 29 C -0.149 4.149 30 C -0.151 4.151 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.081 0.919 42 H 0.244 0.756 43 H 0.047 0.953 44 H 0.096 0.904 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.127 0.873 48 H 0.146 0.854 49 H 0.159 0.841 50 H 0.159 0.841 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.203 17.027 -1.375 17.124 hybrid contribution 1.114 -1.790 1.503 2.590 sum -0.089 15.236 0.128 15.237 Atomic orbital electron populations 1.21627 0.92716 1.01941 1.02655 1.22093 0.98121 0.88099 0.99590 1.62086 1.14626 1.18152 1.30044 1.23018 1.03584 0.96217 0.88402 1.22909 0.81750 0.94444 1.02512 1.88007 1.27545 1.78635 1.36501 1.22546 1.02588 0.87654 0.86373 1.22317 0.91622 0.99906 0.94007 0.91496 1.20437 0.82096 0.78275 0.88923 1.90662 1.41719 1.59721 1.52123 1.45729 1.14906 1.56686 1.17684 1.21629 0.98081 0.95983 0.84054 1.19527 0.94664 0.91430 0.84785 0.86922 1.42623 1.35494 1.27993 1.31582 1.18574 1.02818 0.97877 1.13449 0.93716 1.25416 1.01509 0.96466 1.01781 1.69909 1.41709 1.14398 1.37709 0.85551 0.81023 0.76498 0.79464 1.20692 1.23802 1.16568 1.20531 0.95930 0.97561 0.95634 1.20983 0.98466 0.95443 0.96987 1.21369 1.00714 1.00105 0.93497 1.21367 0.96386 0.98051 0.99204 1.21376 0.98921 0.96611 0.97976 1.21296 0.99348 1.01180 0.93317 0.90702 0.92657 0.92063 0.93614 0.95052 0.87285 0.94049 0.91713 0.85449 0.85949 0.91915 0.75585 0.95307 0.90389 0.79381 0.93864 0.87350 0.85398 0.84121 0.84117 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.97 71.98 0.72 -2.62 16 2 C 0.05 1.51 5.35 86.30 0.46 1.97 16 3 N -0.52 -14.40 4.23 -874.37 -3.70 -18.10 16 4 C 0.02 0.31 5.46 86.31 0.47 0.78 16 5 C 0.06 1.05 7.01 72.01 0.50 1.56 16 6 O -0.39 -8.52 10.83 -148.98 -1.61 -10.14 16 7 C 0.09 1.92 6.28 72.01 0.45 2.37 16 8 C 0.03 0.94 2.37 44.18 0.10 1.04 16 9 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 10 C 0.52 17.27 5.74 87.66 0.50 17.77 16 11 O -0.56 -22.93 15.57 -3.02 -0.05 -22.97 16 12 N -0.70 -21.94 5.39 -463.06 -2.49 -24.43 16 13 C 0.13 4.33 3.89 86.38 0.34 4.67 16 14 C 0.20 6.64 3.25 44.25 0.14 6.78 16 15 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 16 N -0.73 -28.88 3.67 -326.50 -1.20 -30.08 16 17 C -0.20 -10.12 9.01 84.03 0.76 -9.36 16 18 H 0.04 2.72 7.26 -2.91 -0.02 2.70 16 19 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 20 N -0.99 -61.84 13.97 21.65 0.30 -61.54 16 21 Si 0.95 42.38 27.68 68.60 1.90 44.27 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 24 H -0.24 -9.35 6.61 99.48 0.66 -8.69 16 25 C -0.09 -3.22 5.14 -19.87 -0.10 -3.32 16 26 C -0.10 -3.59 8.94 22.27 0.20 -3.39 16 27 C -0.14 -4.38 10.05 22.27 0.22 -4.15 16 28 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 29 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 30 C -0.13 -4.11 9.14 22.27 0.20 -3.90 16 31 H 0.07 1.49 6.74 -2.39 -0.02 1.47 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.05 1.78 5.95 -2.39 -0.01 1.77 16 35 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 36 H 0.11 1.81 6.64 -2.39 -0.02 1.79 16 37 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.41 11.35 8.14 -92.71 -0.75 10.60 16 43 H 0.03 1.24 7.25 -2.39 -0.02 1.22 16 44 H 0.08 2.35 6.88 -2.39 -0.02 2.33 16 45 H 0.37 13.64 5.97 -92.71 -0.55 13.08 16 46 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.11 4.13 7.54 -2.91 -0.02 4.11 16 48 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 49 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 50 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 51 H 0.13 3.61 6.19 -2.92 -0.02 3.59 16 Total: -1.00 -73.14 401.74 -1.37 -74.51 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -0.41 Total: 48.05 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.89 Total: 0.42 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -7.09 Total: -134.15 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.66 Total: -33.11 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.90 Total: 44.27 kcal Total: -73.14 -1.37 -74.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267521523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.278 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds