Wall clock time and date at job start Wed Apr 1 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47033 * 2 1 4 4 C 1.47016 * 111.00333 * 70.34260 * 3 2 1 5 5 C 1.53091 * 109.26353 * 182.39289 * 4 3 2 6 6 O 1.43018 * 109.26120 * 303.15262 * 5 4 3 7 7 C 1.43020 * 113.73680 * 58.66286 * 6 5 4 8 8 C 1.47017 * 111.00249 * 193.97848 * 3 2 1 9 9 H 1.08999 * 109.50451 * 297.58329 * 8 3 2 10 10 C 1.50690 * 109.50555 * 57.67155 * 8 3 2 11 11 O 1.21278 * 120.00281 * 26.69233 * 10 8 3 12 12 N 1.34781 * 119.99854 * 206.69357 * 10 8 3 13 13 C 1.46498 * 120.00001 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47490 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.46605 * 65.00101 * 14 13 12 16 16 N 1.46503 * 109.46646 * 305.00040 * 14 13 12 17 17 C 1.36936 * 119.99888 * 304.16194 * 16 14 13 18 18 H 1.07997 * 120.00357 * 4.70110 * 17 16 14 19 19 C 1.38809 * 119.99750 * 184.70418 * 17 16 14 20 20 N 1.31625 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00225 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46913 * 59.99552 * 21 19 17 23 23 H 1.48496 * 109.47470 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46973 * 299.99949 * 21 19 17 25 25 C 1.50695 * 109.47064 * 184.99980 * 14 13 12 26 26 C 1.38233 * 120.00511 * 333.43160 * 25 14 13 27 27 C 1.38230 * 120.00244 * 179.72400 * 26 25 14 28 28 C 1.38234 * 120.00088 * 0.26324 * 27 26 25 29 29 C 1.38240 * 119.99774 * 0.02562 * 28 27 26 30 30 C 1.38231 * 120.00061 * 359.95111 * 29 28 27 31 31 H 1.08993 * 109.47203 * 60.00110 * 1 2 3 32 32 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47369 * 300.00041 * 1 2 3 34 34 H 1.08999 * 109.47369 * 239.99959 * 2 1 3 35 35 H 1.09003 * 109.47196 * 119.99917 * 2 1 3 36 36 H 1.09003 * 109.50527 * 302.33000 * 4 3 2 37 37 H 1.09001 * 109.50334 * 62.41359 * 4 3 2 38 38 H 1.09003 * 109.50605 * 63.08673 * 5 4 3 39 39 H 1.08999 * 109.51059 * 183.17411 * 5 4 3 40 40 H 1.08996 * 109.50561 * 181.39719 * 7 6 5 41 41 H 1.09004 * 109.50267 * 61.27128 * 7 6 5 42 42 H 0.96998 * 120.00134 * 0.02562 * 12 10 8 43 43 H 1.09007 * 109.47586 * 59.99534 * 13 12 10 44 44 H 1.09000 * 109.47163 * 300.00121 * 13 12 10 45 45 H 0.96995 * 119.99750 * 124.16402 * 16 14 13 46 46 H 0.97007 * 119.99981 * 179.97438 * 20 19 17 47 47 H 1.08006 * 119.99574 * 0.02562 * 26 25 14 48 48 H 1.07999 * 120.00083 * 180.27829 * 27 26 25 49 49 H 1.08006 * 120.00388 * 179.97438 * 28 27 26 50 50 H 1.08006 * 119.99741 * 179.97438 * 29 28 27 51 51 H 1.07999 * 119.99897 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7600 2.0357 1.2925 5 6 2.2306 3.4910 1.2289 6 8 3.6159 3.5238 0.8749 7 6 3.9047 2.8992 -0.3789 8 6 3.4509 1.4378 -0.3315 9 1 4.0206 0.9037 0.4289 10 6 3.6802 0.7959 -1.6755 11 8 2.7897 0.7776 -2.4986 12 7 4.8749 0.2421 -1.9628 13 6 5.0979 -0.3815 -3.2695 14 6 6.5254 -0.9280 -3.3369 15 1 6.6412 -1.7321 -2.6102 16 7 7.4743 0.1459 -3.0325 17 6 7.4548 1.3041 -3.7628 18 1 6.6922 1.4573 -4.5121 19 6 8.4153 2.2812 -3.5402 20 7 9.3444 2.0946 -2.6267 21 14 8.3892 3.8609 -4.5368 22 1 7.1015 4.5660 -4.3134 23 1 9.5118 4.7342 -4.1099 24 1 8.5332 3.5385 -5.9793 25 6 6.7951 -1.4593 -4.7211 26 6 5.7495 -1.9129 -5.5032 27 6 5.9962 -2.3949 -6.7751 28 6 7.2892 -2.4283 -7.2628 29 6 8.3355 -1.9802 -6.4784 30 6 8.0888 -1.4977 -5.2068 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.6914 2.0077 1.5059 37 1 2.3021 1.5112 2.0794 38 1 1.6505 4.0287 0.4788 39 1 2.0919 3.9614 2.2023 40 1 4.9773 2.9414 -0.5680 41 1 3.3733 3.4197 -1.1757 42 1 5.5870 0.2563 -1.3043 43 1 4.9559 0.3605 -4.0553 44 1 4.3890 -1.1978 -3.4083 45 1 8.1162 0.0365 -2.3137 46 1 10.0158 2.7773 -2.4713 47 1 4.7391 -1.8863 -5.1224 48 1 5.1787 -2.7452 -7.3878 49 1 7.4820 -2.8053 -8.2564 50 1 9.3459 -2.0066 -6.8594 51 1 8.9062 -1.1473 -4.5941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267521524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:07 Heat of formation + Delta-G solvation = -26.406086 kcal Electronic energy + Delta-G solvation = -31754.153617 eV Core-core repulsion = 27654.161783 eV Total energy + Delta-G solvation = -4099.991834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.39301 -39.08488 -38.30783 -36.22745 -35.71538 -33.49043 -32.18340 -31.48870 -30.93592 -30.44340 -29.51892 -27.46301 -26.53373 -24.93917 -24.12638 -22.49786 -22.12590 -21.79386 -20.88130 -19.98409 -19.57927 -17.51699 -17.25969 -16.55409 -16.48365 -16.16814 -15.59191 -15.23122 -15.03032 -14.79170 -14.62590 -14.49401 -14.20520 -14.09395 -13.95455 -13.75858 -13.40009 -13.07395 -12.86692 -12.76009 -12.51357 -12.36641 -12.12012 -12.03445 -11.91062 -11.74856 -11.42520 -11.27328 -10.94307 -10.91661 -10.81569 -10.61820 -10.58491 -10.42521 -10.09528 -9.87916 -9.75349 -9.33039 -9.06558 -8.54014 -8.44111 -8.36823 -8.13051 -7.16049 -5.87749 -3.19520 1.88756 1.97482 2.89844 3.30072 3.40364 3.45117 3.47722 3.69360 3.99441 4.33018 4.52966 4.73171 4.83668 4.88833 5.00430 5.06958 5.11222 5.24810 5.29451 5.32077 5.35838 5.42102 5.44536 5.46374 5.47281 5.59972 5.64247 5.65469 5.70005 5.79942 5.80325 5.89776 5.92788 5.97870 6.00363 6.15203 6.18786 6.29066 6.51838 6.60052 6.63128 6.77087 6.86855 6.88135 6.99708 7.05908 7.08211 7.30243 7.57193 7.67697 7.97150 8.28321 8.61856 9.42137 9.88847 10.26042 11.33332 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.003690 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.359301 B = 7586.394161 C = 9731.663386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.514 5.514 4 C 0.018 3.982 5 C 0.060 3.940 6 O -0.378 6.378 7 C 0.077 3.923 8 C 0.035 3.965 9 H 0.066 0.934 10 C 0.517 3.483 11 O -0.532 6.532 12 N -0.700 5.700 13 C 0.117 3.883 14 C 0.197 3.803 15 H 0.072 0.928 16 N -0.713 5.713 17 C -0.234 4.234 18 H 0.069 0.931 19 C -0.003 4.003 20 N -0.930 5.930 21 Si 0.898 3.102 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.078 4.078 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.134 4.134 29 C -0.130 4.130 30 C -0.074 4.074 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.403 0.597 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.113 0.887 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -6.617 5.574 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.240 5.240 4 C -0.110 4.110 5 C -0.018 4.018 6 O -0.296 6.296 7 C -0.001 4.001 8 C -0.077 4.077 9 H 0.084 0.916 10 C 0.301 3.699 11 O -0.408 6.408 12 N -0.351 5.351 13 C -0.009 4.009 14 C 0.085 3.915 15 H 0.090 0.910 16 N -0.353 5.353 17 C -0.364 4.364 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.729 3.271 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.081 4.081 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.153 4.153 29 C -0.148 4.148 30 C -0.092 4.092 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.239 0.761 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.221 0.779 46 H 0.066 0.934 47 H 0.135 0.865 48 H 0.129 0.871 49 H 0.128 0.872 50 H 0.131 0.869 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.455 -6.124 4.634 14.632 hybrid contribution 0.898 0.390 0.231 1.006 sum -11.557 -5.734 4.865 13.788 Atomic orbital electron populations 1.21710 0.94575 1.01345 1.02312 1.22172 0.96575 0.88144 1.01070 1.61987 1.14027 1.17991 1.30041 1.22865 1.02076 0.96019 0.90027 1.22695 0.82902 0.94942 1.01212 1.88037 1.24878 1.78320 1.38361 1.22602 1.02319 0.88814 0.86364 1.22270 0.90321 0.99159 0.95961 0.91576 1.19975 0.82778 0.78763 0.88427 1.90676 1.43226 1.57912 1.49014 1.45786 1.13708 1.57710 1.17926 1.21821 0.97338 0.96920 0.84830 1.19351 0.89349 0.90915 0.91846 0.90987 1.42390 1.39129 1.13658 1.40137 1.18990 1.09513 0.93244 1.14698 0.91342 1.24664 0.97416 0.98709 0.99113 1.69631 1.17699 1.35101 1.35268 0.86404 0.77041 0.83669 0.79955 1.21187 1.21708 1.21230 1.20692 0.93230 0.96499 0.97666 1.21119 0.98784 1.00075 0.94594 1.20970 0.96436 1.01498 0.96104 1.20990 0.93231 1.01702 0.99333 1.21126 0.98562 1.00104 0.95050 1.21076 0.97387 0.95623 0.95142 0.91519 0.92429 0.93087 0.89816 0.95193 0.89214 0.93942 0.92106 0.88427 0.86920 0.91465 0.76135 0.91173 0.92616 0.77865 0.93400 0.86512 0.87082 0.87207 0.86926 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.93 37.16 0.37 -1.09 16 2 C 0.05 0.59 5.35 -3.83 -0.02 0.57 16 3 N -0.51 -6.84 4.24 -227.73 -0.97 -7.81 16 4 C 0.02 0.19 5.46 -3.71 -0.02 0.17 16 5 C 0.06 0.66 7.01 37.20 0.26 0.92 16 6 O -0.38 -5.41 10.83 -35.23 -0.38 -5.79 16 7 C 0.08 1.15 6.27 37.21 0.23 1.38 16 8 C 0.04 0.51 2.38 -68.76 -0.16 0.34 16 9 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 10 C 0.52 8.64 5.82 -10.99 -0.06 8.58 16 11 O -0.53 -10.51 15.46 5.56 0.09 -10.42 16 12 N -0.70 -11.37 5.39 -60.29 -0.32 -11.69 16 13 C 0.12 1.99 3.87 -4.04 -0.02 1.98 16 14 C 0.20 3.40 3.26 -69.08 -0.23 3.18 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 N -0.71 -14.93 3.83 -54.55 -0.21 -15.14 16 17 C -0.23 -5.73 8.62 -15.06 -0.13 -5.86 16 18 H 0.07 1.76 6.93 -52.49 -0.36 1.40 16 19 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 20 N -0.93 -25.51 13.06 55.49 0.72 -24.79 16 21 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C -0.08 -1.37 5.18 -104.63 -0.54 -1.91 16 26 C -0.13 -2.04 9.14 -39.59 -0.36 -2.40 16 27 C -0.13 -1.97 10.05 -39.59 -0.40 -2.36 16 28 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 29 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 30 C -0.07 -1.36 9.00 -39.58 -0.36 -1.71 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.45 6.66 -51.93 -0.35 0.11 16 34 H 0.08 1.20 5.93 -51.93 -0.31 0.89 16 35 H 0.03 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.09 0.80 6.55 -51.93 -0.34 0.46 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.40 6.26 8.14 -40.82 -0.33 5.93 16 43 H 0.07 1.42 7.16 -51.93 -0.37 1.05 16 44 H 0.06 0.88 6.86 -51.93 -0.36 0.53 16 45 H 0.39 8.63 8.04 -40.82 -0.33 8.31 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.12 1.71 6.21 -52.48 -0.33 1.38 16 48 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 50 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 51 H 0.13 2.62 7.52 -52.49 -0.39 2.22 16 LS Contribution 404.45 15.07 6.10 6.10 Total: -1.00 -29.33 404.45 -10.42 -39.74 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -8.09 Total: 16.40 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.32 Total: -3.32 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.77 Total: -59.43 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.30 Total: -16.21 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.33 -10.42 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267521524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.338 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds