Wall clock time and date at job start Wed Apr 1 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47033 * 2 1 4 4 C 1.47016 * 111.00333 * 70.34260 * 3 2 1 5 5 C 1.53091 * 109.26353 * 182.39289 * 4 3 2 6 6 O 1.43018 * 109.26120 * 303.15262 * 5 4 3 7 7 C 1.43020 * 113.73680 * 58.66286 * 6 5 4 8 8 C 1.47017 * 111.00249 * 193.97848 * 3 2 1 9 9 H 1.08999 * 109.50451 * 297.58329 * 8 3 2 10 10 C 1.50690 * 109.50555 * 57.67155 * 8 3 2 11 11 O 1.21278 * 120.00281 * 26.69233 * 10 8 3 12 12 N 1.34781 * 119.99854 * 206.69357 * 10 8 3 13 13 C 1.46498 * 120.00001 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47490 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.46605 * 65.00101 * 14 13 12 16 16 N 1.46503 * 109.46646 * 305.00040 * 14 13 12 17 17 C 1.36936 * 119.99888 * 304.16194 * 16 14 13 18 18 H 1.07997 * 120.00357 * 4.70110 * 17 16 14 19 19 C 1.38809 * 119.99750 * 184.70418 * 17 16 14 20 20 N 1.31625 * 119.99888 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00225 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46913 * 59.99552 * 21 19 17 23 23 H 1.48496 * 109.47470 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46973 * 299.99949 * 21 19 17 25 25 C 1.50695 * 109.47064 * 184.99980 * 14 13 12 26 26 C 1.38233 * 120.00511 * 333.43160 * 25 14 13 27 27 C 1.38230 * 120.00244 * 179.72400 * 26 25 14 28 28 C 1.38234 * 120.00088 * 0.26324 * 27 26 25 29 29 C 1.38240 * 119.99774 * 0.02562 * 28 27 26 30 30 C 1.38231 * 120.00061 * 359.95111 * 29 28 27 31 31 H 1.08993 * 109.47203 * 60.00110 * 1 2 3 32 32 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47369 * 300.00041 * 1 2 3 34 34 H 1.08999 * 109.47369 * 239.99959 * 2 1 3 35 35 H 1.09003 * 109.47196 * 119.99917 * 2 1 3 36 36 H 1.09003 * 109.50527 * 302.33000 * 4 3 2 37 37 H 1.09001 * 109.50334 * 62.41359 * 4 3 2 38 38 H 1.09003 * 109.50605 * 63.08673 * 5 4 3 39 39 H 1.08999 * 109.51059 * 183.17411 * 5 4 3 40 40 H 1.08996 * 109.50561 * 181.39719 * 7 6 5 41 41 H 1.09004 * 109.50267 * 61.27128 * 7 6 5 42 42 H 0.96998 * 120.00134 * 0.02562 * 12 10 8 43 43 H 1.09007 * 109.47586 * 59.99534 * 13 12 10 44 44 H 1.09000 * 109.47163 * 300.00121 * 13 12 10 45 45 H 0.96995 * 119.99750 * 124.16402 * 16 14 13 46 46 H 0.97007 * 119.99981 * 179.97438 * 20 19 17 47 47 H 1.08006 * 119.99574 * 0.02562 * 26 25 14 48 48 H 1.07999 * 120.00083 * 180.27829 * 27 26 25 49 49 H 1.08006 * 120.00388 * 179.97438 * 28 27 26 50 50 H 1.08006 * 119.99741 * 179.97438 * 29 28 27 51 51 H 1.07999 * 119.99897 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7600 2.0357 1.2925 5 6 2.2306 3.4910 1.2289 6 8 3.6159 3.5238 0.8749 7 6 3.9047 2.8992 -0.3789 8 6 3.4509 1.4378 -0.3315 9 1 4.0206 0.9037 0.4289 10 6 3.6802 0.7959 -1.6755 11 8 2.7897 0.7776 -2.4986 12 7 4.8749 0.2421 -1.9628 13 6 5.0979 -0.3815 -3.2695 14 6 6.5254 -0.9280 -3.3369 15 1 6.6412 -1.7321 -2.6102 16 7 7.4743 0.1459 -3.0325 17 6 7.4548 1.3041 -3.7628 18 1 6.6922 1.4573 -4.5121 19 6 8.4153 2.2812 -3.5402 20 7 9.3444 2.0946 -2.6267 21 14 8.3892 3.8609 -4.5368 22 1 7.1015 4.5660 -4.3134 23 1 9.5118 4.7342 -4.1099 24 1 8.5332 3.5385 -5.9793 25 6 6.7951 -1.4593 -4.7211 26 6 5.7495 -1.9129 -5.5032 27 6 5.9962 -2.3949 -6.7751 28 6 7.2892 -2.4283 -7.2628 29 6 8.3355 -1.9802 -6.4784 30 6 8.0888 -1.4977 -5.2068 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.6914 2.0077 1.5059 37 1 2.3021 1.5112 2.0794 38 1 1.6505 4.0287 0.4788 39 1 2.0919 3.9614 2.2023 40 1 4.9773 2.9414 -0.5680 41 1 3.3733 3.4197 -1.1757 42 1 5.5870 0.2563 -1.3043 43 1 4.9559 0.3605 -4.0553 44 1 4.3890 -1.1978 -3.4083 45 1 8.1162 0.0365 -2.3137 46 1 10.0158 2.7773 -2.4713 47 1 4.7391 -1.8863 -5.1224 48 1 5.1787 -2.7452 -7.3878 49 1 7.4820 -2.8053 -8.2564 50 1 9.3459 -2.0066 -6.8594 51 1 8.9062 -1.1473 -4.5941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267521524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:06 Heat of formation + Delta-G solvation = -46.163757 kcal Electronic energy + Delta-G solvation = -31755.010374 eV Core-core repulsion = 27654.161783 eV Total energy + Delta-G solvation = -4100.848591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58680 -40.38611 -39.55426 -37.50817 -36.96878 -35.10239 -33.74870 -32.68342 -31.83339 -31.77368 -31.06934 -28.82346 -27.61642 -26.42857 -25.54712 -23.89088 -23.14490 -23.01352 -22.00646 -21.40023 -20.84226 -19.30253 -18.50997 -17.83359 -17.62335 -17.34505 -16.90954 -16.62563 -16.21185 -16.03875 -15.98738 -15.71769 -15.63518 -15.40649 -15.22590 -15.00685 -14.83924 -14.40343 -14.12401 -14.06017 -13.78208 -13.54120 -13.44398 -13.17077 -13.01753 -12.89665 -12.84695 -12.71644 -12.55812 -12.41832 -12.09820 -11.92124 -11.87646 -11.81653 -11.58232 -11.50884 -11.04566 -10.95186 -10.59752 -9.94594 -9.65042 -9.47612 -9.43540 -8.99470 -7.90954 -5.18077 0.61326 0.68755 1.43949 1.46587 1.50216 1.56015 2.08859 2.56211 2.64208 2.92398 3.04239 3.42318 3.67597 3.74805 3.87095 3.88283 3.90598 4.03701 4.07716 4.20871 4.22271 4.27889 4.33700 4.34769 4.41160 4.41682 4.51192 4.52651 4.60362 4.61987 4.68796 4.74422 4.85732 4.89953 4.93085 4.95143 5.06600 5.11871 5.26373 5.31579 5.33074 5.51128 5.59472 5.72623 5.77018 5.77973 5.96189 5.96734 6.02333 6.27923 6.31954 6.62831 7.27014 7.40625 8.05254 8.33869 9.30334 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.003690 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.359301 B = 7586.394161 C = 9731.663386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.048 3.952 3 N -0.531 5.531 4 C 0.020 3.980 5 C 0.053 3.947 6 O -0.390 6.390 7 C 0.082 3.918 8 C 0.044 3.956 9 H 0.079 0.921 10 C 0.518 3.482 11 O -0.564 6.564 12 N -0.698 5.698 13 C 0.129 3.871 14 C 0.200 3.800 15 H 0.095 0.905 16 N -0.713 5.713 17 C -0.204 4.204 18 H 0.056 0.944 19 C -0.053 4.053 20 N -0.955 5.955 21 Si 0.939 3.061 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.289 1.289 25 C -0.094 4.094 26 C -0.133 4.133 27 C -0.130 4.130 28 C -0.132 4.132 29 C -0.139 4.139 30 C -0.099 4.099 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.408 0.592 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.381 0.619 46 H 0.248 0.752 47 H 0.129 0.871 48 H 0.142 0.858 49 H 0.142 0.858 50 H 0.126 0.874 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 -7.880 5.812 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 N -0.257 5.257 4 C -0.107 4.107 5 C -0.024 4.024 6 O -0.309 6.309 7 C 0.005 3.995 8 C -0.069 4.069 9 H 0.097 0.903 10 C 0.303 3.697 11 O -0.443 6.443 12 N -0.348 5.348 13 C 0.003 3.997 14 C 0.091 3.909 15 H 0.113 0.887 16 N -0.352 5.352 17 C -0.336 4.336 18 H 0.074 0.926 19 C -0.246 4.246 20 N -0.606 5.606 21 Si 0.771 3.229 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.215 1.215 25 C -0.097 4.097 26 C -0.151 4.151 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.157 4.157 30 C -0.118 4.118 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.244 0.756 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.214 0.786 46 H 0.057 0.943 47 H 0.147 0.853 48 H 0.160 0.840 49 H 0.160 0.840 50 H 0.144 0.856 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.310 -7.411 4.871 16.836 hybrid contribution 1.361 0.692 0.108 1.530 sum -12.950 -6.719 4.978 15.415 Atomic orbital electron populations 1.21669 0.93021 1.02337 1.02266 1.22172 0.97811 0.87475 1.00458 1.62011 1.12914 1.18929 1.31885 1.22954 1.03600 0.95299 0.88835 1.22985 0.81131 0.95663 1.02591 1.88020 1.27069 1.78264 1.37530 1.22392 1.01335 0.89270 0.86551 1.22133 0.91735 0.98333 0.94651 0.90327 1.20393 0.82188 0.78083 0.89049 1.90653 1.44184 1.59151 1.50266 1.45788 1.13858 1.57524 1.17647 1.21635 0.97394 0.96388 0.84304 1.19501 0.88283 0.90329 0.92837 0.88690 1.42358 1.39635 1.13730 1.39487 1.18968 1.07701 0.93800 1.13143 0.92572 1.25079 0.98182 1.00767 1.00574 1.69721 1.18547 1.35398 1.36902 0.85740 0.76449 0.81851 0.78881 1.21524 1.22194 1.21544 1.20640 0.93577 0.97705 0.97782 1.21298 0.98786 0.99902 0.95130 1.21374 0.97486 1.00161 0.95748 1.21363 0.92722 1.00480 1.00381 1.21355 1.00017 0.99863 0.94443 1.20985 0.96989 0.97608 0.96210 0.93342 0.90983 0.91244 0.92384 0.93726 0.86887 0.93168 0.92468 0.85393 0.88215 0.93144 0.75629 0.94430 0.90865 0.78580 0.94257 0.85315 0.83993 0.84050 0.85577 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.93 71.98 0.71 -1.79 16 2 C 0.05 1.10 5.35 86.30 0.46 1.56 16 3 N -0.53 -13.45 4.24 -874.42 -3.71 -17.15 16 4 C 0.02 0.39 5.46 86.31 0.47 0.86 16 5 C 0.05 1.06 7.01 72.01 0.50 1.57 16 6 O -0.39 -10.86 10.83 -148.98 -1.61 -12.47 16 7 C 0.08 2.50 6.27 72.01 0.45 2.96 16 8 C 0.04 1.24 2.38 44.18 0.11 1.34 16 9 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 10 C 0.52 17.41 5.82 87.65 0.51 17.92 16 11 O -0.56 -22.55 15.46 -3.02 -0.05 -22.59 16 12 N -0.70 -22.71 5.39 -463.06 -2.49 -25.20 16 13 C 0.13 4.38 3.87 86.38 0.33 4.72 16 14 C 0.20 6.90 3.26 44.24 0.14 7.04 16 15 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 16 N -0.71 -30.38 3.83 -326.51 -1.25 -31.63 16 17 C -0.20 -10.20 8.62 84.03 0.72 -9.48 16 18 H 0.06 2.95 6.93 -2.91 -0.02 2.93 16 19 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 20 N -0.96 -53.70 13.06 21.65 0.28 -53.42 16 21 Si 0.94 45.59 29.55 68.60 2.03 47.61 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 C -0.09 -3.28 5.18 -19.87 -0.10 -3.39 16 26 C -0.13 -4.03 9.14 22.27 0.20 -3.83 16 27 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 28 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 29 C -0.14 -4.39 10.05 22.27 0.22 -4.16 16 30 C -0.10 -3.67 9.00 22.27 0.20 -3.47 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.02 6.66 -2.39 -0.02 1.00 16 34 H 0.06 1.63 5.93 -2.39 -0.01 1.62 16 35 H 0.04 0.89 8.07 -2.39 -0.02 0.87 16 36 H 0.11 1.62 6.55 -2.39 -0.02 1.61 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.41 12.66 8.14 -92.71 -0.75 11.90 16 43 H 0.04 1.54 7.16 -2.38 -0.02 1.52 16 44 H 0.07 2.25 6.86 -2.39 -0.02 2.24 16 45 H 0.38 17.35 8.04 -92.71 -0.75 16.60 16 46 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 47 H 0.13 3.54 6.21 -2.91 -0.02 3.52 16 48 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 49 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 50 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 51 H 0.10 4.33 7.52 -2.91 -0.02 4.30 16 Total: -1.00 -64.49 404.45 -1.50 -65.99 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -0.55 Total: 46.01 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.86 Total: 2.86 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -7.17 Total: -127.40 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.66 Total: -35.06 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -64.49 -1.50 -65.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267521524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.824 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds