Wall clock time and date at job start Wed Apr 1 2020 05:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47378 * 2 1 4 4 O 1.42904 * 109.46711 * 119.99900 * 2 1 3 5 5 C 1.42900 * 113.99858 * 269.99209 * 4 2 1 6 6 C 1.50696 * 109.46927 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.79069 * 269.71945 * 6 5 4 8 8 C 1.38203 * 119.16047 * 179.75505 * 7 6 5 9 9 N 1.31877 * 120.76482 * 0.54044 * 8 7 6 10 10 C 1.31865 * 121.72350 * 359.73630 * 9 8 7 11 11 C 1.38200 * 120.76594 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.47020 * 239.99551 * 2 1 3 13 13 O 1.21283 * 119.99960 * 245.00343 * 12 2 1 14 14 N 1.34771 * 120.00032 * 65.00273 * 12 2 1 15 15 C 1.46497 * 120.00162 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47393 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47345 * 180.02562 * 16 15 14 18 18 H 1.08997 * 110.64274 * 303.31438 * 17 16 15 19 19 C 1.55156 * 110.87335 * 180.02562 * 17 16 15 20 20 C 1.54908 * 101.58197 * 206.06318 * 19 17 16 21 21 N 1.47422 * 104.83357 * 37.01425 * 20 19 17 22 22 C 1.36934 * 125.65321 * 155.91756 * 21 20 19 23 23 H 1.07997 * 120.00156 * 179.97438 * 22 21 20 24 24 C 1.38816 * 119.99339 * 359.94052 * 22 21 20 25 25 N 1.31619 * 120.00310 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99553 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47377 * 60.00572 * 26 24 22 28 28 H 1.48505 * 109.47153 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47370 * 300.00335 * 26 24 22 30 30 C 1.47031 * 108.70136 * 335.86884 * 21 20 19 31 31 H 1.08998 * 109.46676 * 60.00158 * 1 2 3 32 32 H 1.08995 * 109.47378 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47175 * 300.00409 * 1 2 3 34 34 H 1.08998 * 109.47586 * 300.00723 * 5 4 2 35 35 H 1.09005 * 109.46447 * 60.00637 * 5 4 2 36 36 H 1.07996 * 120.41922 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.61905 * 180.29572 * 8 7 6 38 38 H 1.08004 * 119.61361 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.41810 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99904 * 0.02562 * 14 12 2 41 41 H 1.09007 * 109.46904 * 60.00482 * 15 14 12 42 42 H 1.09000 * 109.47700 * 300.00314 * 15 14 12 43 43 H 1.08998 * 109.47021 * 59.99794 * 16 15 14 44 44 H 1.09005 * 109.47177 * 300.00058 * 16 15 14 45 45 H 1.08999 * 111.00338 * 324.14259 * 19 17 16 46 46 H 1.09000 * 110.99867 * 87.94908 * 19 17 16 47 47 H 1.09000 * 110.36459 * 155.84880 * 20 19 17 48 48 H 1.09001 * 110.36573 * 278.06223 * 20 19 17 49 49 H 0.97000 * 119.99728 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.88059 * 241.64343 * 30 21 20 51 51 H 1.08994 * 109.87878 * 120.47623 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6281 3.4610 7 6 1.8148 -1.2041 4.3581 8 6 2.3111 -1.9455 5.4135 9 7 3.6106 -2.0988 5.5780 10 6 4.4828 -1.5609 4.7480 11 6 4.0602 -0.8114 3.6666 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7468 -1.1214 14 7 1.7919 -0.1944 -2.4520 15 6 2.2807 -0.8848 -3.6481 16 6 1.8765 -0.0944 -4.8942 17 6 2.3864 -0.8158 -6.1434 18 1 3.4659 -0.9568 -6.0919 19 6 1.9940 -0.0400 -7.4286 20 6 1.9631 -1.1766 -8.4806 21 7 1.4151 -2.3413 -7.7620 22 6 0.7774 -3.4072 -8.3385 23 1 0.4108 -4.2149 -7.7223 24 6 0.6016 -3.4492 -9.7148 25 7 1.0482 -2.4648 -10.4657 26 14 -0.2689 -4.9029 -10.5012 27 1 -1.6480 -5.0059 -9.9601 28 1 -0.3272 -4.7083 -11.9723 29 1 0.4767 -6.1504 -10.1965 30 6 1.6676 -2.1694 -6.3238 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.9320 0.9513 2.0450 35 1 1.2538 0.6547 2.5588 36 1 0.7497 -1.0786 4.2311 37 1 1.6271 -2.4015 6.1139 38 1 5.5396 -1.7086 4.9149 39 1 4.7795 -0.3737 2.9901 40 1 1.2959 0.6346 -2.5392 41 1 1.8463 -1.8835 -3.6941 42 1 3.3670 -0.9627 -3.6043 43 1 2.3110 0.9041 -4.8479 44 1 0.7901 -0.0161 -4.9383 45 1 1.0120 0.4208 -7.3223 46 1 2.7481 0.7057 -7.6802 47 1 1.3144 -0.9051 -9.3134 48 1 2.9703 -1.3894 -8.8390 49 1 0.9257 -2.4944 -11.4274 50 1 2.3021 -2.9775 -5.9597 51 1 0.7231 -2.1631 -5.7798 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267575993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:05 Heat of formation + Delta-G solvation = -26.353972 kcal Electronic energy + Delta-G solvation = -29156.005555 eV Core-core repulsion = 25056.015981 eV Total energy + Delta-G solvation = -4099.989574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64861 -40.10150 -38.24159 -37.66834 -35.23653 -33.92569 -33.11014 -31.79650 -31.62188 -30.52512 -28.95554 -27.36693 -26.66798 -25.05359 -24.08471 -23.87456 -22.46411 -22.24303 -20.72623 -20.08524 -19.32464 -17.88608 -17.53451 -16.95457 -16.83418 -16.76495 -16.06408 -15.93715 -15.55452 -15.43657 -14.85033 -14.54952 -14.47047 -14.20843 -14.06523 -13.74688 -13.65641 -13.47733 -13.11165 -12.81337 -12.53857 -12.46584 -12.28022 -12.01605 -11.89096 -11.76695 -11.67539 -11.58277 -11.06803 -10.90710 -10.73692 -10.44037 -10.18780 -10.16439 -10.07963 -9.95847 -9.89873 -9.76982 -9.66949 -9.55352 -9.44004 -9.16162 -8.62124 -6.79751 -5.62637 -3.03906 0.69510 0.73421 2.44250 2.60094 3.31725 3.42211 3.46251 3.47645 3.64998 4.06690 4.17965 4.21551 4.38226 4.47705 4.51629 4.57486 4.60308 4.69716 4.81312 4.87530 4.91483 5.07889 5.12397 5.19085 5.23282 5.28301 5.36434 5.49644 5.51683 5.59656 5.62382 5.66352 5.77260 5.85779 5.88394 6.00863 6.15720 6.21322 6.26549 6.33308 6.38838 6.54941 6.61301 6.64583 6.78353 6.99046 7.32776 7.54673 7.55760 7.65792 7.88143 8.06898 8.39420 9.25416 9.86501 10.51868 11.41189 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.001516 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.893519 B =18459.828679 C =18950.274554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.045 4.045 7 C -0.151 4.151 8 C 0.096 3.904 9 N -0.482 5.482 10 C 0.097 3.903 11 C -0.149 4.149 12 C 0.510 3.490 13 O -0.517 6.517 14 N -0.726 5.726 15 C 0.118 3.882 16 C -0.115 4.115 17 C -0.098 4.098 18 H 0.072 0.928 19 C -0.138 4.138 20 C 0.151 3.849 21 N -0.605 5.605 22 C -0.222 4.222 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.923 5.923 26 Si 0.914 3.086 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.139 3.861 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.399 0.601 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.010 0.990 49 H 0.252 0.748 50 H 0.019 0.981 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 13.239 28.471 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.105 0.895 4 O -0.266 6.266 5 C 0.022 3.978 6 C -0.053 4.053 7 C -0.171 4.171 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.294 3.706 13 O -0.391 6.391 14 N -0.380 5.380 15 C -0.005 4.005 16 C -0.153 4.153 17 C -0.118 4.118 18 H 0.090 0.910 19 C -0.177 4.177 20 C 0.026 3.974 21 N -0.331 5.331 22 C -0.350 4.350 23 H 0.094 0.906 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.013 3.987 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.233 0.767 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.123 0.877 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.037 0.963 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.064 11.683 29.042 31.372 hybrid contribution -0.976 0.378 -1.234 1.618 sum 1.088 12.061 27.808 30.331 Atomic orbital electron populations 1.22246 0.93243 1.04213 1.03227 1.21937 0.95298 0.96240 0.85557 0.89497 1.88148 1.86577 1.33474 1.18427 1.21423 1.00133 0.91638 0.84624 1.19947 0.93716 0.96913 0.94719 1.22087 1.01002 0.98253 0.95788 1.22795 0.91987 0.95255 0.96084 1.67680 1.03407 1.19507 1.28583 1.22802 0.99792 0.92971 0.90429 1.22116 0.95855 0.99866 0.99075 1.20292 0.80269 0.85784 0.84250 1.90759 1.39079 1.22871 1.86356 1.45998 1.58261 1.27946 1.05771 1.21534 0.99614 0.96802 0.82527 1.21779 1.01684 0.98712 0.93162 1.22098 0.99649 0.96480 0.93542 0.90965 1.23036 0.99843 0.98642 0.96154 1.21918 0.97750 0.83693 0.94032 1.44508 1.66936 1.21574 1.00078 1.19053 1.28540 0.97033 0.90389 0.90597 1.24782 1.01427 0.98548 0.96019 1.69793 1.51443 1.31667 1.04325 0.86156 0.79368 0.81761 0.78242 1.21202 1.21570 1.21234 1.21367 0.96091 0.93536 0.87658 0.90624 0.90801 0.91201 0.91695 0.91622 0.84567 0.82503 0.82454 0.84521 0.76733 0.90789 0.91418 0.91643 0.91154 0.92219 0.92514 0.87699 0.97160 0.93757 0.96261 0.95983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.07 0.58 3.13 -27.88 -0.09 0.50 16 3 H 0.09 0.44 7.79 -51.93 -0.40 0.04 16 4 O -0.35 -3.61 9.51 -55.09 -0.52 -4.13 16 5 C 0.10 0.66 5.92 36.00 0.21 0.88 16 6 C -0.04 -0.36 5.55 -104.32 -0.58 -0.94 16 7 C -0.15 -1.11 9.82 -39.44 -0.39 -1.49 16 8 C 0.10 0.75 11.18 -17.54 -0.20 0.56 16 9 N -0.48 -4.66 10.36 -13.25 -0.14 -4.80 16 10 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 11 C -0.15 -1.17 9.82 -39.44 -0.39 -1.56 16 12 C 0.51 6.13 7.18 -10.99 -0.08 6.05 16 13 O -0.52 -8.93 16.51 -14.30 -0.24 -9.17 16 14 N -0.73 -7.22 5.52 -60.29 -0.33 -7.56 16 15 C 0.12 1.47 5.52 -4.04 -0.02 1.45 16 16 C -0.12 -1.40 4.73 -26.73 -0.13 -1.53 16 17 C -0.10 -1.62 2.98 -88.78 -0.26 -1.89 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.14 -2.51 6.54 -24.58 -0.16 -2.68 16 20 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 21 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 22 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 23 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 24 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 25 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 26 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 C 0.14 2.92 5.98 -3.06 -0.02 2.90 16 31 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.06 0.34 8.04 -51.93 -0.42 -0.08 16 35 H 0.07 0.30 7.83 -51.93 -0.41 -0.11 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.40 2.60 8.26 -40.82 -0.34 2.26 16 41 H 0.07 1.09 7.49 -51.92 -0.39 0.70 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 45 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.02 0.46 7.76 -51.93 -0.40 0.05 16 LS Contribution 417.22 15.07 6.29 6.29 Total: -1.00 -36.64 417.22 -10.70 -47.34 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.52 Total: -1.32 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.20 Total: -1.12 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.49 Total: -55.21 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.76 Total: -13.30 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.64 -10.70 -47.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267575993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.985 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds