Wall clock time and date at job start Wed Apr 1 2020 05:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47378 * 2 1 4 4 O 1.42904 * 109.46711 * 119.99900 * 2 1 3 5 5 C 1.42900 * 113.99858 * 269.99209 * 4 2 1 6 6 C 1.50696 * 109.46927 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.79069 * 269.71945 * 6 5 4 8 8 C 1.38203 * 119.16047 * 179.75505 * 7 6 5 9 9 N 1.31877 * 120.76482 * 0.54044 * 8 7 6 10 10 C 1.31865 * 121.72350 * 359.73630 * 9 8 7 11 11 C 1.38200 * 120.76594 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.47020 * 239.99551 * 2 1 3 13 13 O 1.21283 * 119.99960 * 245.00343 * 12 2 1 14 14 N 1.34771 * 120.00032 * 65.00273 * 12 2 1 15 15 C 1.46497 * 120.00162 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47393 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47345 * 180.02562 * 16 15 14 18 18 H 1.08997 * 110.64274 * 303.31438 * 17 16 15 19 19 C 1.55156 * 110.87335 * 180.02562 * 17 16 15 20 20 C 1.54908 * 101.58197 * 206.06318 * 19 17 16 21 21 N 1.47422 * 104.83357 * 37.01425 * 20 19 17 22 22 C 1.36934 * 125.65321 * 155.91756 * 21 20 19 23 23 H 1.07997 * 120.00156 * 179.97438 * 22 21 20 24 24 C 1.38816 * 119.99339 * 359.94052 * 22 21 20 25 25 N 1.31619 * 120.00310 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99553 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47377 * 60.00572 * 26 24 22 28 28 H 1.48505 * 109.47153 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47370 * 300.00335 * 26 24 22 30 30 C 1.47031 * 108.70136 * 335.86884 * 21 20 19 31 31 H 1.08998 * 109.46676 * 60.00158 * 1 2 3 32 32 H 1.08995 * 109.47378 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47175 * 300.00409 * 1 2 3 34 34 H 1.08998 * 109.47586 * 300.00723 * 5 4 2 35 35 H 1.09005 * 109.46447 * 60.00637 * 5 4 2 36 36 H 1.07996 * 120.41922 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.61905 * 180.29572 * 8 7 6 38 38 H 1.08004 * 119.61361 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.41810 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99904 * 0.02562 * 14 12 2 41 41 H 1.09007 * 109.46904 * 60.00482 * 15 14 12 42 42 H 1.09000 * 109.47700 * 300.00314 * 15 14 12 43 43 H 1.08998 * 109.47021 * 59.99794 * 16 15 14 44 44 H 1.09005 * 109.47177 * 300.00058 * 16 15 14 45 45 H 1.08999 * 111.00338 * 324.14259 * 19 17 16 46 46 H 1.09000 * 110.99867 * 87.94908 * 19 17 16 47 47 H 1.09000 * 110.36459 * 155.84880 * 20 19 17 48 48 H 1.09001 * 110.36573 * 278.06223 * 20 19 17 49 49 H 0.97000 * 119.99728 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.88059 * 241.64343 * 30 21 20 51 51 H 1.08994 * 109.87878 * 120.47623 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6281 3.4610 7 6 1.8148 -1.2041 4.3581 8 6 2.3111 -1.9455 5.4135 9 7 3.6106 -2.0988 5.5780 10 6 4.4828 -1.5609 4.7480 11 6 4.0602 -0.8114 3.6666 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7468 -1.1214 14 7 1.7919 -0.1944 -2.4520 15 6 2.2807 -0.8848 -3.6481 16 6 1.8765 -0.0944 -4.8942 17 6 2.3864 -0.8158 -6.1434 18 1 3.4659 -0.9568 -6.0919 19 6 1.9940 -0.0400 -7.4286 20 6 1.9631 -1.1766 -8.4806 21 7 1.4151 -2.3413 -7.7620 22 6 0.7774 -3.4072 -8.3385 23 1 0.4108 -4.2149 -7.7223 24 6 0.6016 -3.4492 -9.7148 25 7 1.0482 -2.4648 -10.4657 26 14 -0.2689 -4.9029 -10.5012 27 1 -1.6480 -5.0059 -9.9601 28 1 -0.3272 -4.7083 -11.9723 29 1 0.4767 -6.1504 -10.1965 30 6 1.6676 -2.1694 -6.3238 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.9320 0.9513 2.0450 35 1 1.2538 0.6547 2.5588 36 1 0.7497 -1.0786 4.2311 37 1 1.6271 -2.4015 6.1139 38 1 5.5396 -1.7086 4.9149 39 1 4.7795 -0.3737 2.9901 40 1 1.2959 0.6346 -2.5392 41 1 1.8463 -1.8835 -3.6941 42 1 3.3670 -0.9627 -3.6043 43 1 2.3110 0.9041 -4.8479 44 1 0.7901 -0.0161 -4.9383 45 1 1.0120 0.4208 -7.3223 46 1 2.7481 0.7057 -7.6802 47 1 1.3144 -0.9051 -9.3134 48 1 2.9703 -1.3894 -8.8390 49 1 0.9257 -2.4944 -11.4274 50 1 2.3021 -2.9775 -5.9597 51 1 0.7231 -2.1631 -5.7798 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267575993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:04 Heat of formation + Delta-G solvation = -50.748132 kcal Electronic energy + Delta-G solvation = -29157.063365 eV Core-core repulsion = 25056.015981 eV Total energy + Delta-G solvation = -4101.047384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.25670 -40.90981 -39.48579 -38.69828 -36.45042 -34.84581 -34.42557 -32.87304 -32.16053 -31.81009 -30.58282 -28.15740 -27.87572 -26.67005 -25.09612 -24.42933 -23.48243 -22.96748 -21.96042 -21.59121 -20.67196 -18.90035 -18.59082 -18.15822 -17.51586 -17.42055 -17.12216 -16.68984 -16.58555 -16.50344 -16.27021 -15.69309 -15.60387 -15.21568 -14.84449 -14.76935 -14.53264 -14.27460 -14.20837 -13.79319 -13.64287 -13.53760 -13.36594 -13.29875 -13.11547 -12.95431 -12.81929 -12.67983 -12.50119 -12.29695 -12.21834 -12.03516 -11.76985 -11.54117 -11.43074 -11.24569 -11.07118 -10.76024 -10.74187 -10.49942 -10.47686 -10.12024 -10.10369 -8.87831 -7.77849 -5.22092 0.12860 0.18428 1.44563 1.47829 1.54338 1.56458 1.87079 2.48941 2.69628 3.09188 3.30676 3.56507 3.61704 3.73979 3.75616 3.76551 3.78883 3.94881 3.96489 4.08106 4.11051 4.18786 4.19488 4.33537 4.36696 4.39120 4.43459 4.63882 4.68735 4.71688 4.72303 4.74506 4.82086 4.87151 4.89407 4.97732 5.03565 5.12860 5.19392 5.23015 5.27435 5.33156 5.41829 5.43726 5.52222 5.69987 5.74303 5.83982 6.01325 6.32541 6.57528 6.98972 7.11592 7.24712 7.79694 8.43305 9.23360 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.001516 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.893519 B =18459.828679 C =18950.274554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.076 3.924 3 H 0.127 0.873 4 O -0.385 6.385 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.082 3.918 9 N -0.513 5.513 10 C 0.082 3.918 11 C -0.160 4.160 12 C 0.503 3.497 13 O -0.580 6.580 14 N -0.708 5.708 15 C 0.123 3.877 16 C -0.098 4.098 17 C -0.085 4.085 18 H 0.077 0.923 19 C -0.120 4.120 20 C 0.148 3.852 21 N -0.629 5.629 22 C -0.244 4.244 23 H 0.075 0.925 24 C -0.067 4.067 25 N -0.947 5.947 26 Si 0.979 3.021 27 H -0.276 1.276 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.134 3.866 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.420 0.580 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.072 0.928 48 H -0.018 1.018 49 H 0.247 0.753 50 H 0.007 0.993 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 15.752 29.819 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.145 0.855 4 O -0.304 6.304 5 C 0.021 3.979 6 C -0.069 4.069 7 C -0.174 4.174 8 C -0.074 4.074 9 N -0.223 5.223 10 C -0.075 4.075 11 C -0.179 4.179 12 C 0.290 3.710 13 O -0.459 6.459 14 N -0.363 5.363 15 C -0.001 4.001 16 C -0.136 4.136 17 C -0.105 4.105 18 H 0.095 0.905 19 C -0.158 4.158 20 C 0.023 3.977 21 N -0.355 5.355 22 C -0.373 4.373 23 H 0.093 0.907 24 C -0.259 4.259 25 N -0.597 5.597 26 Si 0.807 3.193 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.208 1.208 30 C 0.008 3.992 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.176 0.824 37 H 0.195 0.805 38 H 0.191 0.809 39 H 0.167 0.833 40 H 0.258 0.742 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.000 1.000 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.945 14.252 30.415 33.602 hybrid contribution -0.612 -0.440 -1.636 1.801 sum 0.333 13.813 28.778 31.923 Atomic orbital electron populations 1.22264 0.91570 1.03217 1.05456 1.22051 0.96301 0.97043 0.83085 0.85516 1.88105 1.87010 1.35541 1.19705 1.21618 1.01990 0.91193 0.83112 1.20299 0.93911 0.97207 0.95433 1.22372 1.02152 0.97588 0.95271 1.23223 0.91878 0.95475 0.96864 1.67686 1.04425 1.20566 1.29600 1.23143 1.00593 0.93115 0.90601 1.22348 0.96507 0.99903 0.99170 1.21167 0.79038 0.85095 0.85733 1.90732 1.42090 1.25797 1.87303 1.45786 1.57620 1.28268 1.04587 1.21280 0.99015 0.95895 0.83872 1.21620 1.02170 0.99514 0.90256 1.22024 0.99575 0.93865 0.95026 0.90496 1.22868 1.01564 0.96997 0.94405 1.21774 0.95097 0.85619 0.95213 1.44855 1.66742 1.21552 1.02328 1.19414 1.28823 0.98027 0.91021 0.90705 1.25624 1.02483 1.01278 0.96529 1.70053 1.52378 1.33163 1.04075 0.85141 0.78523 0.78588 0.77007 1.20166 1.21567 1.20823 1.21570 0.96543 0.96027 0.85011 0.88676 0.93389 0.88706 0.90014 0.88937 0.82370 0.80526 0.80902 0.83320 0.74229 0.93735 0.92223 0.87949 0.90421 0.91177 0.89485 0.91034 1.00034 0.94300 0.97500 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.48 71.98 0.68 -0.84 16 2 C 0.08 1.02 3.13 29.85 0.09 1.12 16 3 H 0.13 0.68 7.79 -2.39 -0.02 0.66 16 4 O -0.38 -7.28 9.51 -129.99 -1.24 -8.51 16 5 C 0.10 1.04 5.92 71.23 0.42 1.46 16 6 C -0.06 -0.88 5.55 -19.67 -0.11 -0.99 16 7 C -0.15 -2.06 9.82 22.36 0.22 -1.84 16 8 C 0.08 1.25 11.18 84.68 0.95 2.20 16 9 N -0.51 -9.94 10.36 -195.84 -2.03 -11.97 16 10 C 0.08 1.35 11.18 84.68 0.95 2.29 16 11 C -0.16 -2.42 9.82 22.36 0.22 -2.21 16 12 C 0.50 11.36 7.18 87.66 0.63 11.99 16 13 O -0.58 -20.39 16.51 15.95 0.26 -20.12 16 14 N -0.71 -12.23 5.52 -463.06 -2.55 -14.79 16 15 C 0.12 2.87 5.52 86.38 0.48 3.34 16 16 C -0.10 -2.04 4.73 30.59 0.14 -1.89 16 17 C -0.09 -2.66 2.98 -9.60 -0.03 -2.69 16 18 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 19 C -0.12 -4.12 6.54 31.99 0.21 -3.91 16 20 C 0.15 7.33 5.89 86.86 0.51 7.84 16 21 N -0.63 -33.34 3.39 -691.98 -2.35 -35.69 16 22 C -0.24 -14.17 10.27 84.03 0.86 -13.31 16 23 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 24 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 25 N -0.95 -57.16 10.09 21.65 0.22 -56.95 16 26 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 30 C 0.13 5.60 5.98 86.73 0.52 6.12 16 31 H 0.09 0.48 7.92 -2.39 -0.02 0.46 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.42 7.87 -2.39 -0.02 0.40 16 34 H 0.08 0.58 8.04 -2.39 -0.02 0.56 16 35 H 0.09 0.47 7.83 -2.38 -0.02 0.45 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 37 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.42 3.66 8.26 -92.71 -0.77 2.90 16 41 H 0.04 1.31 7.49 -2.38 -0.02 1.29 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.58 8.06 -2.38 -0.02 1.56 16 45 H 0.07 2.28 8.05 -2.39 -0.02 2.27 16 46 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.07 4.03 5.87 -2.39 -0.01 4.01 16 48 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.03 1.07 7.76 -2.39 -0.02 1.05 16 Total: -1.00 -85.28 417.22 1.70 -83.58 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.15 Total: 10.52 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 7.21 Total: 5.29 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -6.71 Total: -119.40 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.97 Total: -28.64 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -85.28 1.70 -83.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267575993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.830 kcal (2) G-P(sol) polarization free energy of solvation -85.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds