Wall clock time and date at job start Wed Apr 1 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47403 * 2 1 4 4 O 1.42904 * 109.47189 * 239.99853 * 2 1 3 5 5 C 1.42900 * 113.99562 * 89.99719 * 4 2 1 6 6 C 1.50701 * 109.46930 * 180.02562 * 5 4 2 7 7 C 1.38655 * 120.79228 * 269.71978 * 6 5 4 8 8 C 1.38194 * 119.16565 * 179.75226 * 7 6 5 9 9 N 1.31874 * 120.76237 * 0.53938 * 8 7 6 10 10 C 1.31865 * 121.72657 * 359.73017 * 9 8 7 11 11 C 1.38207 * 120.76477 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47485 * 120.00063 * 2 1 3 13 13 O 1.21280 * 120.00337 * 111.44143 * 12 2 1 14 14 N 1.34782 * 119.99909 * 291.44537 * 12 2 1 15 15 C 1.47020 * 125.64766 * 184.47869 * 14 12 2 16 16 C 1.54330 * 107.26973 * 178.97482 * 15 14 12 17 17 C 1.55154 * 102.94028 * 337.80653 * 16 15 14 18 18 H 1.09000 * 111.00400 * 277.39206 * 17 16 15 19 19 C 1.52999 * 111.00341 * 153.57876 * 17 16 15 20 20 N 1.46501 * 109.47361 * 69.57791 * 19 17 16 21 21 C 1.46493 * 120.00251 * 270.00239 * 20 19 17 22 22 C 1.36936 * 119.99581 * 90.00002 * 20 19 17 23 23 H 1.08002 * 120.00755 * 349.54544 * 22 20 19 24 24 C 1.38813 * 119.99581 * 169.55147 * 22 20 19 25 25 N 1.31614 * 120.00016 * 319.65909 * 24 22 20 26 26 Si 1.86800 * 120.00015 * 139.39270 * 24 22 20 27 27 H 1.48493 * 109.47264 * 270.26919 * 26 24 22 28 28 H 1.48501 * 109.47176 * 30.27408 * 26 24 22 29 29 H 1.48505 * 109.47182 * 150.27276 * 26 24 22 30 30 C 1.47465 * 125.62837 * 4.47623 * 14 12 2 31 31 H 1.08996 * 109.47023 * 305.88129 * 1 2 3 32 32 H 1.08997 * 109.47211 * 65.88340 * 1 2 3 33 33 H 1.08999 * 109.47211 * 185.88301 * 1 2 3 34 34 H 1.08997 * 109.47559 * 300.00318 * 5 4 2 35 35 H 1.09002 * 109.47275 * 60.00834 * 5 4 2 36 36 H 1.08004 * 120.41303 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.62280 * 180.25018 * 8 7 6 38 38 H 1.08000 * 119.61995 * 180.02562 * 10 9 8 39 39 H 1.07993 * 120.41850 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.88468 * 59.55400 * 15 14 12 41 41 H 1.09002 * 110.00765 * 298.46120 * 15 14 12 42 42 H 1.09004 * 110.71619 * 219.44302 * 16 15 14 43 43 H 1.09000 * 110.87256 * 96.23762 * 16 15 14 44 44 H 1.08995 * 109.47004 * 309.57990 * 19 17 16 45 45 H 1.08997 * 109.47281 * 189.58136 * 19 17 16 46 46 H 1.08997 * 109.47124 * 272.17094 * 21 20 19 47 47 H 1.09008 * 109.47211 * 32.17191 * 21 20 19 48 48 H 1.08999 * 109.47534 * 152.16965 * 21 20 19 49 49 H 0.97002 * 119.99940 * 356.56779 * 25 24 22 50 50 H 1.09003 * 110.34986 * 85.24937 * 30 14 12 51 51 H 1.08998 * 110.40403 * 322.91927 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7002 -0.6284 -3.4614 7 6 4.0591 -0.8076 -3.6710 8 6 4.4804 -1.5622 -4.7492 9 7 3.6074 -2.0995 -5.5789 10 6 2.3083 -1.9455 -5.4137 11 6 1.8127 -1.2089 -4.3545 12 6 2.0324 -0.7104 1.2304 13 8 2.5966 -1.7789 1.1259 14 7 1.8547 -0.1583 2.4471 15 6 2.3728 -0.6933 3.7147 16 6 1.9449 0.2812 4.8323 17 6 1.6946 1.6047 4.0621 18 1 2.6280 2.1422 3.8953 19 6 0.6824 2.4846 4.7985 20 7 1.2852 2.9945 6.0325 21 6 1.1602 2.2331 7.2778 22 6 1.9656 4.1828 6.0219 23 1 2.2045 4.6600 5.0829 24 6 2.3483 4.7741 7.2180 25 7 1.5297 4.7641 8.2486 26 14 4.0281 5.5775 7.3674 27 1 5.0186 4.5718 7.8282 28 1 4.4418 6.1095 6.0441 29 1 3.9593 6.6901 8.3486 30 6 1.1084 1.0824 2.7267 31 1 -0.3633 0.6023 0.8326 32 1 -0.3633 0.4199 -0.9379 33 1 -0.3633 -1.0222 0.1053 34 1 1.2537 0.6547 -2.5588 35 1 2.9320 0.9513 -2.0451 36 1 4.7790 -0.3665 -2.9974 37 1 5.5370 -1.7099 -4.9171 38 1 1.6235 -2.4010 -6.1137 39 1 0.7476 -1.0867 -4.2244 40 1 3.4602 -0.7561 3.6738 41 1 1.9514 -1.6809 3.9026 42 1 2.7445 0.4053 5.5626 43 1 1.0310 -0.0614 5.3174 44 1 -0.2015 1.8954 5.0424 45 1 0.3967 3.3213 4.1610 46 1 0.2388 2.5170 7.7862 47 1 1.1366 1.1671 7.0511 48 1 2.0122 2.4486 7.9226 49 1 0.6402 4.3879 8.1578 50 1 0.0453 0.8686 2.8369 51 1 1.2694 1.8102 1.9314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267690388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:31 Heat of formation + Delta-G solvation = -14.342960 kcal Electronic energy + Delta-G solvation = -30199.894745 eV Core-core repulsion = 26100.426007 eV Total energy + Delta-G solvation = -4099.468737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.62829 -40.26510 -38.48216 -37.36715 -35.64407 -33.86507 -32.63335 -31.67230 -31.57787 -30.16373 -29.20883 -27.29999 -26.36659 -25.48740 -24.60130 -23.83693 -22.54450 -22.31015 -21.24591 -20.01730 -19.47828 -17.88036 -17.33960 -17.12505 -16.90380 -16.63971 -16.11824 -15.98672 -15.71409 -15.19902 -14.66988 -14.18452 -14.07901 -14.04592 -13.94083 -13.75975 -13.62040 -13.48833 -13.28224 -13.12794 -12.94645 -12.54330 -12.44555 -12.22535 -11.91685 -11.86518 -11.64429 -11.49382 -11.35107 -10.88339 -10.62798 -10.56606 -10.44405 -10.32489 -10.15881 -10.12326 -10.06876 -9.85933 -9.71958 -9.63962 -9.51041 -8.67695 -8.24705 -7.07908 -6.26473 -3.10716 0.74445 0.77737 2.50399 2.57631 3.33140 3.48381 3.51208 3.67348 3.68831 4.10311 4.17724 4.28370 4.36687 4.50213 4.55933 4.64900 4.68280 4.73413 4.75026 4.89465 4.90345 4.94759 5.04448 5.21706 5.22727 5.24076 5.31226 5.34326 5.40983 5.43900 5.50971 5.56721 5.61540 5.76637 5.82630 5.91698 5.95152 6.04035 6.11965 6.28129 6.30893 6.33016 6.43657 6.51108 6.65659 6.68106 6.88531 7.05724 7.43908 7.59481 7.91037 8.08303 8.48207 9.01001 9.81851 10.19292 11.07579 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.001900 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.325112 B =14733.604958 C =15297.639204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 H 0.088 0.912 4 O -0.350 6.350 5 C 0.097 3.903 6 C -0.043 4.043 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.529 3.471 13 O -0.526 6.526 14 N -0.613 5.613 15 C 0.110 3.890 16 C -0.117 4.117 17 C -0.117 4.117 18 H 0.087 0.913 19 C 0.167 3.833 20 N -0.601 5.601 21 C 0.131 3.869 22 C -0.375 4.375 23 H 0.064 0.936 24 C -0.014 4.014 25 N -0.895 5.895 26 Si 1.047 2.953 27 H -0.294 1.294 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.098 3.902 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.050 0.950 46 H 0.004 0.996 47 H 0.020 0.980 48 H 0.055 0.945 49 H 0.270 0.730 50 H 0.071 0.929 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -9.736 -21.907 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 H 0.105 0.895 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.051 4.051 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.316 3.684 13 O -0.401 6.401 14 N -0.349 5.349 15 C -0.012 4.012 16 C -0.155 4.155 17 C -0.139 4.139 18 H 0.105 0.895 19 C 0.038 3.962 20 N -0.324 5.324 21 C -0.015 4.015 22 C -0.502 4.502 23 H 0.082 0.918 24 C -0.218 4.218 25 N -0.534 5.534 26 Si 0.877 3.123 27 H -0.221 1.221 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.025 4.025 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.022 0.978 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.288 -10.236 -21.683 23.979 hybrid contribution -1.342 0.072 -0.283 1.374 sum -1.630 -10.164 -21.966 24.259 Atomic orbital electron populations 1.22278 0.93262 1.03978 1.03541 1.21863 0.95369 0.96228 0.85136 0.89454 1.88110 1.86635 1.33590 1.18466 1.21433 1.00272 0.91661 0.84558 1.19962 0.93711 0.96745 0.94724 1.22130 0.95891 0.99791 0.99092 1.22792 0.99758 0.93017 0.90458 1.67672 1.03380 1.19629 1.28551 1.22780 0.91994 0.95368 0.96050 1.22085 1.01011 0.98239 0.95784 1.19915 0.79820 0.85600 0.83114 1.90718 1.42363 1.21255 1.85790 1.48498 1.53942 1.26454 1.06002 1.21999 0.99027 0.97589 0.82597 1.22652 1.02303 0.94143 0.96429 1.23195 1.02135 0.96250 0.92338 0.89507 1.20539 0.91932 0.95095 0.88590 1.43912 1.63471 1.21554 1.03479 1.21038 0.99551 0.92223 0.88655 1.19841 1.34244 1.01291 0.94839 0.91793 1.25527 1.04012 0.99165 0.93083 1.70806 1.07388 1.39481 1.35689 0.83787 0.77244 0.76136 0.75157 1.22132 1.21882 1.21892 1.22588 0.95973 0.85050 0.98872 0.90265 0.91102 0.91143 0.91561 0.91600 0.84497 0.82470 0.82535 0.84573 0.91646 0.91764 0.89721 0.91001 0.94494 0.93175 0.97788 0.96137 0.92629 0.91880 0.91087 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.34 37.16 0.35 -1.10 16 2 C 0.08 0.80 2.46 -27.89 -0.07 0.73 16 3 H 0.09 0.76 7.19 -51.93 -0.37 0.38 16 4 O -0.35 -4.18 9.52 -55.00 -0.52 -4.70 16 5 C 0.10 0.81 5.92 36.01 0.21 1.02 16 6 C -0.04 -0.39 5.55 -104.32 -0.58 -0.97 16 7 C -0.15 -1.31 9.82 -39.44 -0.39 -1.70 16 8 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 9 N -0.48 -4.91 10.36 -13.25 -0.14 -5.05 16 10 C 0.09 0.80 11.18 -17.55 -0.20 0.60 16 11 C -0.15 -1.22 9.82 -39.44 -0.39 -1.61 16 12 C 0.53 7.58 7.21 -10.98 -0.08 7.50 16 13 O -0.53 -9.74 16.85 -14.21 -0.24 -9.98 16 14 N -0.61 -8.11 3.33 -170.49 -0.57 -8.68 16 15 C 0.11 1.49 6.87 -3.06 -0.02 1.47 16 16 C -0.12 -1.64 4.95 -24.89 -0.12 -1.76 16 17 C -0.12 -1.73 3.27 -88.47 -0.29 -2.02 16 18 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 19 C 0.17 2.94 5.19 -4.04 -0.02 2.91 16 20 N -0.60 -13.65 2.85 -181.13 -0.52 -14.17 16 21 C 0.13 2.88 8.79 59.84 0.53 3.40 16 22 C -0.37 -9.77 9.46 -15.06 -0.14 -9.91 16 23 H 0.06 1.69 8.06 -52.49 -0.42 1.26 16 24 C -0.01 -0.38 4.37 -17.43 -0.08 -0.45 16 25 N -0.90 -25.77 12.55 55.49 0.70 -25.08 16 26 Si 1.05 24.38 30.06 -169.99 -5.11 19.27 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 30 C 0.10 1.14 4.83 -2.51 -0.01 1.13 16 31 H 0.08 0.59 5.97 -51.93 -0.31 0.28 16 32 H 0.07 0.46 7.77 -51.93 -0.40 0.05 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.41 7.73 -51.93 -0.40 0.01 16 35 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 43 H 0.07 0.97 7.40 -51.93 -0.38 0.59 16 44 H 0.04 0.60 7.97 -51.93 -0.41 0.19 16 45 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 46 H 0.00 0.09 7.19 -51.93 -0.37 -0.28 16 47 H 0.02 0.38 6.18 -51.92 -0.32 0.05 16 48 H 0.05 1.36 6.75 -51.93 -0.35 1.01 16 49 H 0.27 7.82 6.73 -40.82 -0.27 7.55 16 50 H 0.07 0.74 7.38 -51.93 -0.38 0.35 16 51 H 0.07 0.72 7.20 -51.93 -0.37 0.35 16 LS Contribution 409.54 15.07 6.17 6.17 Total: -1.00 -33.97 409.54 -9.94 -43.91 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.22 Total: -1.60 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.49 Total: -0.09 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.53 Total: -52.97 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.76 Total: -14.68 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.11 Total: 19.27 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.97 -9.94 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267690388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.563 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds