Wall clock time and date at job start Wed Apr 1 2020 04:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47403 * 2 1 4 4 O 1.42904 * 109.47189 * 239.99853 * 2 1 3 5 5 C 1.42900 * 113.99562 * 89.99719 * 4 2 1 6 6 C 1.50701 * 109.46930 * 180.02562 * 5 4 2 7 7 C 1.38655 * 120.79228 * 269.71978 * 6 5 4 8 8 C 1.38194 * 119.16565 * 179.75226 * 7 6 5 9 9 N 1.31874 * 120.76237 * 0.53938 * 8 7 6 10 10 C 1.31865 * 121.72657 * 359.73017 * 9 8 7 11 11 C 1.38207 * 120.76477 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47485 * 120.00063 * 2 1 3 13 13 O 1.21280 * 120.00337 * 111.44143 * 12 2 1 14 14 N 1.34782 * 119.99909 * 291.44537 * 12 2 1 15 15 C 1.47020 * 125.64766 * 184.47869 * 14 12 2 16 16 C 1.54330 * 107.26973 * 178.97482 * 15 14 12 17 17 C 1.55154 * 102.94028 * 337.80653 * 16 15 14 18 18 H 1.09000 * 111.00400 * 277.39206 * 17 16 15 19 19 C 1.52999 * 111.00341 * 153.57876 * 17 16 15 20 20 N 1.46501 * 109.47361 * 69.57791 * 19 17 16 21 21 C 1.46493 * 120.00251 * 270.00239 * 20 19 17 22 22 C 1.36936 * 119.99581 * 90.00002 * 20 19 17 23 23 H 1.08002 * 120.00755 * 349.54544 * 22 20 19 24 24 C 1.38813 * 119.99581 * 169.55147 * 22 20 19 25 25 N 1.31614 * 120.00016 * 319.65909 * 24 22 20 26 26 Si 1.86800 * 120.00015 * 139.39270 * 24 22 20 27 27 H 1.48493 * 109.47264 * 270.26919 * 26 24 22 28 28 H 1.48501 * 109.47176 * 30.27408 * 26 24 22 29 29 H 1.48505 * 109.47182 * 150.27276 * 26 24 22 30 30 C 1.47465 * 125.62837 * 4.47623 * 14 12 2 31 31 H 1.08996 * 109.47023 * 305.88129 * 1 2 3 32 32 H 1.08997 * 109.47211 * 65.88340 * 1 2 3 33 33 H 1.08999 * 109.47211 * 185.88301 * 1 2 3 34 34 H 1.08997 * 109.47559 * 300.00318 * 5 4 2 35 35 H 1.09002 * 109.47275 * 60.00834 * 5 4 2 36 36 H 1.08004 * 120.41303 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.62280 * 180.25018 * 8 7 6 38 38 H 1.08000 * 119.61995 * 180.02562 * 10 9 8 39 39 H 1.07993 * 120.41850 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.88468 * 59.55400 * 15 14 12 41 41 H 1.09002 * 110.00765 * 298.46120 * 15 14 12 42 42 H 1.09004 * 110.71619 * 219.44302 * 16 15 14 43 43 H 1.09000 * 110.87256 * 96.23762 * 16 15 14 44 44 H 1.08995 * 109.47004 * 309.57990 * 19 17 16 45 45 H 1.08997 * 109.47281 * 189.58136 * 19 17 16 46 46 H 1.08997 * 109.47124 * 272.17094 * 21 20 19 47 47 H 1.09008 * 109.47211 * 32.17191 * 21 20 19 48 48 H 1.08999 * 109.47534 * 152.16965 * 21 20 19 49 49 H 0.97002 * 119.99940 * 356.56779 * 25 24 22 50 50 H 1.09003 * 110.34986 * 85.24937 * 30 14 12 51 51 H 1.08998 * 110.40403 * 322.91927 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7002 -0.6284 -3.4614 7 6 4.0591 -0.8076 -3.6710 8 6 4.4804 -1.5622 -4.7492 9 7 3.6074 -2.0995 -5.5789 10 6 2.3083 -1.9455 -5.4137 11 6 1.8127 -1.2089 -4.3545 12 6 2.0324 -0.7104 1.2304 13 8 2.5966 -1.7789 1.1259 14 7 1.8547 -0.1583 2.4471 15 6 2.3728 -0.6933 3.7147 16 6 1.9449 0.2812 4.8323 17 6 1.6946 1.6047 4.0621 18 1 2.6280 2.1422 3.8953 19 6 0.6824 2.4846 4.7985 20 7 1.2852 2.9945 6.0325 21 6 1.1602 2.2331 7.2778 22 6 1.9656 4.1828 6.0219 23 1 2.2045 4.6600 5.0829 24 6 2.3483 4.7741 7.2180 25 7 1.5297 4.7641 8.2486 26 14 4.0281 5.5775 7.3674 27 1 5.0186 4.5718 7.8282 28 1 4.4418 6.1095 6.0441 29 1 3.9593 6.6901 8.3486 30 6 1.1084 1.0824 2.7267 31 1 -0.3633 0.6023 0.8326 32 1 -0.3633 0.4199 -0.9379 33 1 -0.3633 -1.0222 0.1053 34 1 1.2537 0.6547 -2.5588 35 1 2.9320 0.9513 -2.0451 36 1 4.7790 -0.3665 -2.9974 37 1 5.5370 -1.7099 -4.9171 38 1 1.6235 -2.4010 -6.1137 39 1 0.7476 -1.0867 -4.2244 40 1 3.4602 -0.7561 3.6738 41 1 1.9514 -1.6809 3.9026 42 1 2.7445 0.4053 5.5626 43 1 1.0310 -0.0614 5.3174 44 1 -0.2015 1.8954 5.0424 45 1 0.3967 3.3213 4.1610 46 1 0.2388 2.5170 7.7862 47 1 1.1366 1.1671 7.0511 48 1 2.0122 2.4486 7.9226 49 1 0.6402 4.3879 8.1578 50 1 0.0453 0.8686 2.8369 51 1 1.2694 1.8102 1.9314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267690388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:30 Heat of formation + Delta-G solvation = -34.350612 kcal Electronic energy + Delta-G solvation = -30200.762342 eV Core-core repulsion = 26100.426007 eV Total energy + Delta-G solvation = -4100.336334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.47288 -41.08015 -39.45558 -38.48246 -37.28628 -34.57838 -34.02845 -32.79433 -32.17529 -31.53418 -30.33080 -28.08113 -27.92070 -26.93173 -25.69086 -24.44574 -23.59616 -23.00719 -22.79532 -21.30149 -20.53220 -19.25354 -18.69396 -17.97137 -17.60996 -17.41906 -17.15305 -16.76543 -16.50564 -16.18516 -15.96689 -15.84936 -15.41420 -15.13931 -14.85060 -14.77495 -14.71176 -14.55093 -14.41748 -14.07872 -13.86087 -13.52120 -13.40286 -13.24167 -13.06472 -12.99235 -12.69742 -12.58961 -12.51988 -12.43452 -12.33119 -12.11948 -11.88505 -11.71304 -11.60496 -11.43758 -11.15753 -10.78920 -10.59610 -10.49648 -10.24486 -10.11680 -9.75805 -8.96513 -8.34407 -5.13639 0.10368 0.17115 1.45108 1.60980 1.64189 1.65949 1.83355 2.60215 2.67865 3.01283 3.12765 3.31732 3.46805 3.55780 3.68499 3.73641 3.76950 3.84359 3.90514 3.97381 4.04473 4.08785 4.17550 4.26037 4.35559 4.37573 4.39854 4.54408 4.60362 4.66486 4.67409 4.69432 4.75048 4.78729 4.83267 4.85874 4.92142 4.95883 4.97147 5.13041 5.17954 5.18460 5.21488 5.25930 5.31577 5.46918 5.72623 5.90301 5.95336 6.40598 6.41355 6.97367 7.01980 7.06756 7.88340 8.25807 8.99422 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.001900 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.325112 B =14733.604958 C =15297.639204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.380 6.380 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.161 4.161 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.084 3.916 11 C -0.153 4.153 12 C 0.522 3.478 13 O -0.578 6.578 14 N -0.612 5.612 15 C 0.112 3.888 16 C -0.110 4.110 17 C -0.109 4.109 18 H 0.064 0.936 19 C 0.165 3.835 20 N -0.617 5.617 21 C 0.142 3.858 22 C -0.365 4.365 23 H 0.060 0.940 24 C -0.069 4.069 25 N -0.928 5.928 26 Si 1.093 2.907 27 H -0.291 1.291 28 H -0.273 1.273 29 H -0.300 1.300 30 C 0.106 3.894 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.051 0.949 46 H -0.011 1.011 47 H 0.056 0.944 48 H 0.022 0.978 49 H 0.257 0.743 50 H 0.095 0.905 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -9.426 -23.826 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.130 0.870 4 O -0.299 6.299 5 C 0.019 3.981 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.072 4.072 11 C -0.172 4.172 12 C 0.311 3.689 13 O -0.457 6.457 14 N -0.346 5.346 15 C -0.011 4.011 16 C -0.148 4.148 17 C -0.131 4.131 18 H 0.082 0.918 19 C 0.038 3.962 20 N -0.341 5.341 21 C -0.003 4.003 22 C -0.494 4.494 23 H 0.078 0.922 24 C -0.267 4.267 25 N -0.570 5.570 26 Si 0.920 3.080 27 H -0.218 1.218 28 H -0.198 1.198 29 H -0.228 1.228 30 C -0.016 4.016 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.192 0.808 38 H 0.197 0.803 39 H 0.177 0.823 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.007 0.993 47 H 0.074 0.926 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.113 0.887 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.299 -9.920 -23.642 25.672 hybrid contribution -1.064 -0.083 0.247 1.095 sum -2.363 -10.003 -23.395 25.553 Atomic orbital electron populations 1.22279 0.91208 1.03525 1.05469 1.21951 0.96719 0.96388 0.83144 0.86967 1.88073 1.87016 1.35333 1.19482 1.21622 1.01954 0.91264 0.83224 1.20252 0.93997 0.97216 0.95348 1.22336 0.96444 0.99984 0.99311 1.23126 1.00623 0.93024 0.90493 1.67691 1.04386 1.20556 1.29417 1.23241 0.91890 0.95379 0.96712 1.22369 1.02136 0.97501 0.95217 1.20719 0.78819 0.85143 0.84197 1.90691 1.44795 1.23679 1.86531 1.48544 1.53646 1.26686 1.05713 1.21915 0.98537 0.97694 0.82917 1.22560 1.02194 0.93883 0.96188 1.22886 1.00387 0.95751 0.94099 0.91756 1.20736 0.92973 0.95712 0.86755 1.44144 1.63935 1.20782 1.05243 1.20871 0.97351 0.94039 0.88063 1.20047 1.33165 1.01821 0.94330 0.92183 1.26588 1.06128 1.00638 0.93358 1.70924 1.07284 1.42157 1.36598 0.83134 0.73933 0.75216 0.75716 1.21833 1.19833 1.22773 1.22630 0.96617 0.84700 0.97635 0.88969 0.88608 0.92687 0.88898 0.90579 0.83632 0.80833 0.80275 0.82285 0.92692 0.91520 0.91278 0.89974 0.92469 0.93086 0.99280 0.92580 0.95877 0.93341 0.88712 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.34 71.98 0.67 -1.49 16 2 C 0.08 1.45 2.46 29.85 0.07 1.52 16 3 H 0.11 1.48 7.19 -2.39 -0.02 1.46 16 4 O -0.38 -8.30 9.52 -130.08 -1.24 -9.53 16 5 C 0.09 1.33 5.92 71.24 0.42 1.76 16 6 C -0.06 -0.99 5.55 -19.67 -0.11 -1.10 16 7 C -0.16 -2.72 9.82 22.36 0.22 -2.51 16 8 C 0.08 1.45 11.18 84.68 0.95 2.40 16 9 N -0.51 -10.12 10.36 -195.85 -2.03 -12.15 16 10 C 0.08 1.32 11.18 84.68 0.95 2.26 16 11 C -0.15 -2.18 9.82 22.36 0.22 -1.97 16 12 C 0.52 14.11 7.21 87.66 0.63 14.74 16 13 O -0.58 -21.32 16.85 15.87 0.27 -21.05 16 14 N -0.61 -14.79 3.33 -811.68 -2.70 -17.49 16 15 C 0.11 2.89 6.87 86.73 0.60 3.49 16 16 C -0.11 -2.89 4.95 31.78 0.16 -2.73 16 17 C -0.11 -2.97 3.27 -9.40 -0.03 -3.01 16 18 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 19 C 0.16 5.39 5.19 86.38 0.45 5.83 16 20 N -0.62 -27.47 2.85 -726.96 -2.07 -29.54 16 21 C 0.14 6.22 8.79 127.77 1.12 7.35 16 22 C -0.36 -18.85 9.46 84.03 0.79 -18.05 16 23 H 0.06 3.10 8.06 -2.91 -0.02 3.08 16 24 C -0.07 -3.74 4.37 84.86 0.37 -3.37 16 25 N -0.93 -54.43 12.55 21.65 0.27 -54.16 16 26 Si 1.09 49.45 30.06 68.60 2.06 51.51 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 30 C 0.11 2.07 4.83 86.85 0.42 2.49 16 31 H 0.09 0.93 5.97 -2.39 -0.01 0.92 16 32 H 0.10 0.78 7.77 -2.39 -0.02 0.76 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.78 7.73 -2.39 -0.02 0.76 16 35 H 0.08 0.88 8.04 -2.39 -0.02 0.86 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.04 8.09 -2.38 -0.02 2.02 16 43 H 0.08 2.00 7.40 -2.39 -0.02 1.98 16 44 H 0.06 1.66 7.97 -2.39 -0.02 1.64 16 45 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 46 H -0.01 -0.50 7.19 -2.39 -0.02 -0.52 16 47 H 0.06 2.00 6.18 -2.38 -0.01 1.98 16 48 H 0.02 1.13 6.75 -2.39 -0.02 1.12 16 49 H 0.26 15.24 6.73 -92.71 -0.62 14.62 16 50 H 0.09 1.49 7.38 -2.39 -0.02 1.47 16 51 H 0.10 1.48 7.20 -2.39 -0.02 1.46 16 Total: -1.00 -75.76 409.54 3.52 -72.25 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.06 Total: 12.54 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 7.90 Total: 7.62 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -6.53 Total: -113.34 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.97 Total: -30.58 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.06 Total: 51.51 kcal Total: -75.76 3.52 -72.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267690388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.897 kcal (2) G-P(sol) polarization free energy of solvation -75.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds