Wall clock time and date at job start Wed Apr 1 2020 04:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47292 * 2 1 4 4 O 1.42901 * 109.47263 * 240.00118 * 2 1 3 5 5 C 1.42900 * 114.00013 * 89.99840 * 4 2 1 6 6 C 1.50694 * 109.47099 * 180.02562 * 5 4 2 7 7 C 1.38660 * 120.79288 * 269.71779 * 6 5 4 8 8 C 1.38197 * 119.16355 * 179.75379 * 7 6 5 9 9 N 1.31868 * 120.76729 * 0.53917 * 8 7 6 10 10 C 1.31873 * 121.72388 * 359.73516 * 9 8 7 11 11 C 1.38203 * 120.76575 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47078 * 120.00347 * 2 1 3 13 13 O 1.21279 * 120.00232 * 107.64274 * 12 2 1 14 14 N 1.34784 * 119.99976 * 287.63837 * 12 2 1 15 15 C 1.47016 * 125.64504 * 5.38380 * 14 12 2 16 16 C 1.54324 * 107.27189 * 181.01820 * 15 14 12 17 17 C 1.55166 * 102.94031 * 22.19192 * 16 15 14 18 18 H 1.08997 * 111.00655 * 82.56984 * 17 16 15 19 19 C 1.52999 * 111.00534 * 206.38725 * 17 16 15 20 20 N 1.46498 * 109.46985 * 293.54696 * 19 17 16 21 21 C 1.46498 * 120.00303 * 89.99817 * 20 19 17 22 22 C 1.36941 * 119.99911 * 270.00112 * 20 19 17 23 23 H 1.08003 * 119.99697 * 31.11162 * 22 20 19 24 24 C 1.38812 * 119.99830 * 211.12379 * 22 20 19 25 25 N 1.31616 * 120.00449 * 6.90377 * 24 22 20 26 26 Si 1.86800 * 119.99653 * 186.91327 * 24 22 20 27 27 H 1.48497 * 109.47346 * 59.99755 * 26 24 22 28 28 H 1.48505 * 109.46899 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47220 * 299.99483 * 26 24 22 30 30 C 1.47419 * 125.64813 * 185.06661 * 14 12 2 31 31 H 1.09009 * 109.47263 * 66.88143 * 1 2 3 32 32 H 1.08999 * 109.47708 * 186.87983 * 1 2 3 33 33 H 1.09004 * 109.47419 * 306.88068 * 1 2 3 34 34 H 1.08995 * 109.47442 * 300.00744 * 5 4 2 35 35 H 1.09003 * 109.46730 * 60.00564 * 5 4 2 36 36 H 1.08005 * 120.41325 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61633 * 180.29421 * 8 7 6 38 38 H 1.07996 * 119.62098 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.42312 * 180.02562 * 11 10 9 40 40 H 1.09005 * 109.88392 * 300.43096 * 15 14 12 41 41 H 1.09005 * 109.88572 * 61.60067 * 15 14 12 42 42 H 1.08992 * 110.72463 * 140.55062 * 16 15 14 43 43 H 1.09000 * 110.72390 * 263.83244 * 16 15 14 44 44 H 1.09007 * 109.46974 * 53.54245 * 19 17 16 45 45 H 1.08998 * 109.47362 * 173.54455 * 19 17 16 46 46 H 1.09007 * 109.47282 * 85.49120 * 21 20 19 47 47 H 1.08998 * 109.47056 * 205.48919 * 21 20 19 48 48 H 1.08997 * 109.47115 * 325.49087 * 21 20 19 49 49 H 0.96990 * 120.00186 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.37118 * 274.75481 * 30 14 12 51 51 H 1.09003 * 110.36499 * 37.07765 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7002 -0.6283 -3.4613 7 6 4.0591 -0.8075 -3.6709 8 6 4.4805 -1.5622 -4.7492 9 7 3.6075 -2.0994 -5.5789 10 6 2.3083 -1.9453 -5.4138 11 6 1.8127 -1.2087 -4.3547 12 6 2.0322 -0.7105 1.2304 13 8 2.5345 -1.8101 1.1332 14 7 1.9234 -0.1238 2.4390 15 6 1.2403 1.1483 2.7155 16 6 1.3943 1.4326 4.2244 17 6 2.6392 0.5910 4.6113 18 1 3.5600 1.1242 4.3752 19 6 2.5990 0.2001 6.0900 20 7 2.7310 1.4023 6.9166 21 6 1.5357 2.1406 7.3319 22 6 3.9717 1.8361 7.3011 23 1 4.8253 1.6659 6.6617 24 6 4.1321 2.4943 8.5127 25 7 3.1227 2.5823 9.3526 26 14 5.7808 3.2554 8.9509 27 1 6.1388 4.2789 7.9363 28 1 5.6910 3.8948 10.2882 29 1 6.8231 2.1979 8.9763 30 6 2.4640 -0.6548 3.7035 31 1 -0.3634 0.4035 -0.9452 32 1 -0.3634 -1.0202 0.1231 33 1 -0.3634 0.6168 0.8220 34 1 1.2538 0.6548 -2.5588 35 1 2.9320 0.9513 -2.0449 36 1 4.7790 -0.3665 -2.9973 37 1 5.5371 -1.7104 -4.9166 38 1 1.6236 -2.4001 -6.1142 39 1 0.7475 -1.0864 -4.2245 40 1 1.7014 1.9498 2.1383 41 1 0.1839 1.0650 2.4599 42 1 1.5757 2.4927 4.4006 43 1 0.5148 1.0944 4.7724 44 1 1.6507 -0.2902 6.3105 45 1 3.4203 -0.4826 6.3078 46 1 1.1316 1.6958 8.2414 47 1 1.7992 3.1810 7.5224 48 1 0.7871 2.0944 6.5411 49 1 3.2347 3.0425 10.1990 50 1 1.7612 -1.3575 4.1512 51 1 3.4264 -1.1368 3.5319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267690389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:35 Heat of formation + Delta-G solvation = -15.362196 kcal Electronic energy + Delta-G solvation = -30030.598490 eV Core-core repulsion = 25931.085555 eV Total energy + Delta-G solvation = -4099.512935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61965 -40.22636 -38.45122 -37.27731 -35.36602 -33.85682 -32.58546 -31.58055 -31.38753 -30.25176 -29.20289 -27.30679 -26.16337 -25.73155 -24.34373 -23.83726 -22.63101 -22.35085 -21.26572 -19.85205 -19.47661 -17.85622 -17.11036 -16.87478 -16.79479 -16.58626 -16.01345 -15.97829 -15.41891 -15.25880 -14.94755 -14.44197 -14.17167 -14.02823 -13.84480 -13.67696 -13.62094 -13.29623 -13.03219 -12.97199 -12.73047 -12.58035 -12.29160 -12.13397 -11.95473 -11.87832 -11.60955 -11.36805 -11.03620 -10.91267 -10.78916 -10.51390 -10.39015 -10.33121 -10.13233 -10.07246 -9.93198 -9.85901 -9.83460 -9.60164 -9.51045 -8.62196 -8.53988 -6.65200 -5.78413 -3.30666 0.74260 0.77703 2.52406 2.61744 3.34311 3.35660 3.41077 3.41698 3.69549 4.10450 4.18739 4.27677 4.36575 4.45481 4.55618 4.63938 4.68361 4.74538 4.78257 4.87863 4.91234 4.93851 5.04184 5.23404 5.24741 5.31114 5.33614 5.40883 5.42489 5.47175 5.56646 5.68537 5.77464 5.84790 5.91257 5.92883 6.04536 6.16276 6.19979 6.30897 6.37092 6.46457 6.66553 6.73339 6.76619 6.86555 7.30921 7.49658 7.59575 7.65807 7.77845 8.12453 8.42800 9.22162 9.82864 10.36106 11.27703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.001804 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.551546 B =15519.112956 C =16271.789029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 H 0.085 0.915 4 O -0.350 6.350 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.149 4.149 8 C 0.097 3.903 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.528 3.472 13 O -0.523 6.523 14 N -0.614 5.614 15 C 0.093 3.907 16 C -0.116 4.116 17 C -0.116 4.116 18 H 0.082 0.918 19 C 0.161 3.839 20 N -0.596 5.596 21 C 0.161 3.839 22 C -0.260 4.260 23 H 0.063 0.937 24 C 0.008 3.992 25 N -0.905 5.905 26 Si 0.904 3.096 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.112 3.888 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.051 0.949 46 H 0.017 0.983 47 H 0.049 0.951 48 H -0.002 1.002 49 H 0.254 0.746 50 H 0.068 0.932 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -2.005 -25.319 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.103 0.897 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.315 3.685 13 O -0.399 6.399 14 N -0.350 5.350 15 C -0.029 4.029 16 C -0.154 4.154 17 C -0.138 4.138 18 H 0.100 0.900 19 C 0.033 3.967 20 N -0.319 5.319 21 C 0.016 3.984 22 C -0.390 4.390 23 H 0.081 0.919 24 C -0.191 4.191 25 N -0.549 5.549 26 Si 0.733 3.267 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.208 1.208 30 C -0.011 4.011 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.035 0.965 47 H 0.067 0.933 48 H 0.016 0.984 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.318 -3.231 -25.960 26.913 hybrid contribution 0.473 1.361 1.110 1.819 sum -5.845 -1.869 -24.851 25.597 Atomic orbital electron populations 1.22279 0.93371 1.04033 1.03352 1.21874 0.95313 0.96159 0.85237 0.89674 1.88122 1.86611 1.33567 1.18465 1.21424 1.00187 0.91673 0.84608 1.19960 0.93714 0.96787 0.94714 1.22133 0.95885 0.99805 0.99080 1.22796 0.99773 0.92979 0.90449 1.67676 1.03378 1.19595 1.28571 1.22781 0.91998 0.95350 0.96059 1.22082 1.00989 0.98261 0.95797 1.19891 0.79552 0.86003 0.83096 1.90726 1.44102 1.19471 1.85561 1.48516 1.55786 1.23586 1.07094 1.22301 0.96486 0.85311 0.98836 1.22636 0.99156 1.01869 0.91706 1.23239 0.98184 0.94059 0.98361 0.89989 1.20624 0.99095 0.89721 0.87246 1.43738 1.03570 1.25643 1.58905 1.20806 0.86478 0.96804 0.94301 1.19074 0.86297 1.33927 0.99665 0.91911 1.25219 0.97173 1.01247 0.95439 1.70000 1.30203 1.45449 1.09251 0.86369 0.83814 0.79146 0.77346 1.21027 1.21626 1.20826 1.22422 0.99012 0.97245 0.82397 0.91142 0.91068 0.90369 0.91629 0.91652 0.84488 0.82455 0.82538 0.84590 0.91745 0.91500 0.89698 0.90704 0.94384 0.93095 0.96466 0.93253 0.98353 0.93617 0.91423 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.37 37.15 0.35 -1.02 16 2 C 0.08 0.78 2.54 -27.89 -0.07 0.71 16 3 H 0.09 0.69 7.50 -51.93 -0.39 0.30 16 4 O -0.35 -4.12 9.53 -54.83 -0.52 -4.64 16 5 C 0.10 0.79 5.92 36.00 0.21 1.00 16 6 C -0.04 -0.39 5.55 -104.31 -0.58 -0.96 16 7 C -0.15 -1.30 9.82 -39.44 -0.39 -1.69 16 8 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 9 N -0.48 -4.88 10.36 -13.26 -0.14 -5.02 16 10 C 0.09 0.79 11.18 -17.55 -0.20 0.59 16 11 C -0.15 -1.20 9.82 -39.44 -0.39 -1.59 16 12 C 0.53 7.58 7.17 -10.98 -0.08 7.50 16 13 O -0.52 -9.83 16.84 -14.04 -0.24 -10.06 16 14 N -0.61 -8.16 3.32 -170.38 -0.57 -8.72 16 15 C 0.09 1.00 6.03 -3.07 -0.02 0.98 16 16 C -0.12 -1.54 4.87 -24.89 -0.12 -1.66 16 17 C -0.12 -1.83 3.31 -88.35 -0.29 -2.12 16 18 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 19 C 0.16 3.08 5.21 -4.04 -0.02 3.05 16 20 N -0.60 -14.05 2.82 -181.12 -0.51 -14.56 16 21 C 0.16 3.68 8.74 59.85 0.52 4.21 16 22 C -0.26 -6.85 9.58 -15.06 -0.14 -6.99 16 23 H 0.06 1.63 7.84 -52.48 -0.41 1.22 16 24 C 0.01 0.23 5.14 -17.43 -0.09 0.14 16 25 N -0.91 -25.76 10.97 55.49 0.61 -25.16 16 26 Si 0.90 21.32 29.56 -169.99 -5.02 16.30 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 C 0.11 1.62 6.36 -2.41 -0.02 1.61 16 31 H 0.07 0.42 7.76 -51.92 -0.40 0.02 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.08 0.53 5.68 -51.93 -0.30 0.23 16 34 H 0.07 0.38 7.72 -51.93 -0.40 -0.02 16 35 H 0.07 0.44 8.04 -51.93 -0.42 0.03 16 36 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.06 0.60 7.94 -51.93 -0.41 0.19 16 41 H 0.07 0.58 6.15 -51.93 -0.32 0.26 16 42 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 43 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 44 H 0.04 0.68 8.04 -51.93 -0.42 0.27 16 45 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 46 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 47 H 0.05 1.24 7.10 -51.93 -0.37 0.87 16 48 H 0.00 -0.04 5.97 -51.93 -0.31 -0.35 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 51 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 LS Contribution 410.34 15.07 6.18 6.18 Total: -1.00 -34.06 410.34 -9.99 -44.05 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -8.27 Total: -2.78 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.51 Total: 4.42 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.61 Total: -53.46 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.76 Total: -14.71 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.06 -9.99 -44.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267690389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.686 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds